Wall clock time and date at job start Tue Mar 31 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47031 * 2 1 4 4 C 1.53001 * 109.47107 * 120.00631 * 2 1 3 5 5 C 1.52999 * 109.47189 * 185.00022 * 4 2 1 6 6 H 1.09004 * 109.47108 * 304.99795 * 5 4 2 7 7 C 1.52999 * 109.47267 * 184.99837 * 5 4 2 8 8 N 1.46501 * 109.46938 * 64.99359 * 5 4 2 9 9 C 1.34782 * 119.99773 * 204.99884 * 8 5 4 10 10 O 1.21608 * 119.99968 * 0.02562 * 9 8 5 11 11 C 1.47389 * 119.99888 * 180.02562 * 9 8 5 12 12 C 1.38876 * 120.01728 * 359.97438 * 11 9 8 13 13 C 1.38239 * 120.46118 * 179.72388 * 12 11 9 14 14 C 1.37963 * 120.27519 * 0.25586 * 13 12 11 15 15 C 1.39189 * 120.44703 * 0.02562 * 14 13 12 16 16 S 1.76143 * 131.63210 * 179.97438 * 15 14 13 17 17 C 1.70689 * 90.71370 * 180.02562 * 16 15 14 18 18 N 1.28160 * 111.37129 * 359.97438 * 17 16 15 19 19 C 1.33642 * 118.02455 * 0.02562 * 18 17 16 20 20 N 1.46506 * 109.46773 * 240.00248 * 2 1 3 21 21 C 1.36935 * 119.99753 * 85.00321 * 20 2 1 22 22 H 1.07997 * 120.00283 * 359.97438 * 21 20 2 23 23 C 1.38813 * 119.99763 * 179.97438 * 21 20 2 24 24 N 1.31621 * 120.00235 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99954 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46824 * 90.00747 * 25 23 21 27 27 H 1.48504 * 109.47383 * 210.00435 * 25 23 21 28 28 H 1.48501 * 109.47478 * 330.00605 * 25 23 21 29 29 H 1.09006 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47067 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47526 * 60.00026 * 1 2 3 32 32 H 1.08994 * 109.47394 * 64.99952 * 4 2 1 33 33 H 1.09007 * 109.46797 * 304.99730 * 4 2 1 34 34 H 1.09002 * 109.46806 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47060 * 299.99526 * 7 5 4 36 36 H 1.08998 * 109.47216 * 59.99944 * 7 5 4 37 37 H 0.96997 * 120.00640 * 25.00451 * 8 5 4 38 38 H 1.08002 * 119.77320 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.86664 * 180.28249 * 13 12 11 40 40 H 1.07993 * 119.77289 * 179.97438 * 14 13 12 41 41 H 1.07989 * 124.31460 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00122 * 264.99261 * 20 2 1 43 43 H 0.96999 * 120.00290 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4385 2.4924 8 7 3.9479 0.7892 1.4924 9 6 5.1612 1.2134 1.0867 10 8 5.9377 0.4318 0.5718 11 6 5.5468 2.6245 1.2670 12 6 4.6601 3.5174 1.8545 13 6 5.0145 4.8416 2.0333 14 6 6.2529 5.2915 1.6244 15 6 7.1585 4.4192 1.0276 16 16 8.7870 4.6689 0.4045 17 6 8.8896 3.0258 -0.0463 18 7 7.8152 2.3926 0.2492 19 6 6.8256 3.0738 0.8344 20 7 2.0182 -0.6906 -1.1963 21 6 2.1490 -0.0074 -2.3758 22 1 1.8919 1.0404 -2.4243 23 6 2.6121 -0.6616 -3.5091 24 7 2.9251 -1.9387 -3.4501 25 14 2.7899 0.2702 -5.1183 26 1 4.1519 0.8561 -5.2032 27 1 2.5800 -0.6614 -6.2556 28 1 1.7792 1.3568 -5.1755 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7716 1.2055 33 1 1.6053 -0.2619 2.1370 34 1 5.1714 -1.3612 2.5385 35 1 3.6546 -1.0596 3.4193 36 1 3.8001 -2.4821 2.3593 37 1 3.3285 1.4127 1.9028 38 1 3.6888 3.1739 2.1783 39 1 4.3192 5.5267 2.4954 40 1 6.5211 6.3277 1.7677 41 1 9.7500 2.5771 -0.5200 42 1 2.2490 -1.6317 -1.1528 43 1 3.2484 -2.3959 -4.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134361154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:43 Heat of formation + Delta-G solvation = 8.173817 kcal Electronic energy + Delta-G solvation = -26342.391543 eV Core-core repulsion = 22706.356602 eV Total energy + Delta-G solvation = -3636.034941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78420 -40.36987 -38.25808 -37.82723 -36.03173 -34.07393 -33.02116 -31.23636 -30.93080 -30.38192 -27.59469 -26.13570 -25.69222 -25.20737 -23.02123 -22.22742 -21.73392 -21.16570 -19.81698 -19.22314 -18.16086 -17.48674 -17.19266 -16.69469 -16.46476 -16.23732 -15.95693 -15.64174 -15.59036 -15.39402 -14.97715 -14.61377 -14.45971 -14.24561 -13.64723 -13.56231 -13.35411 -13.19518 -13.10223 -12.95841 -12.89937 -12.80578 -12.66099 -12.27758 -12.22456 -12.20062 -11.82255 -11.56145 -11.41543 -11.15425 -10.97377 -10.91560 -10.44501 -9.99456 -9.79739 -9.14164 -8.95299 -7.93654 -5.18392 -0.83095 -0.17744 0.26907 0.62271 1.37467 1.38669 1.41565 1.47682 1.85719 2.21575 2.53888 2.78833 3.05196 3.41023 3.52751 3.81123 3.84078 3.95526 4.02140 4.14141 4.18147 4.20378 4.40998 4.49867 4.54634 4.61699 4.69870 4.79573 4.83371 4.95251 5.00742 5.05324 5.06100 5.11719 5.19899 5.24213 5.35208 5.43278 5.50249 5.61779 5.65025 5.68353 6.29968 6.61388 6.72217 7.35335 7.38435 8.16955 8.35435 9.30400 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.004029 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.559404 B = 6947.612222 C = 8204.774164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.041 0.959 7 C -0.150 4.150 8 N -0.698 5.698 9 C 0.541 3.459 10 O -0.565 6.565 11 C -0.117 4.117 12 C -0.058 4.058 13 C -0.098 4.098 14 C -0.042 4.042 15 C -0.213 4.213 16 S 0.153 5.847 17 C 0.058 3.942 18 N -0.501 5.501 19 C 0.091 3.909 20 N -0.732 5.732 21 C -0.223 4.223 22 H 0.069 0.931 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.958 3.042 26 H -0.301 1.301 27 H -0.293 1.293 28 H -0.264 1.264 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.169 0.831 39 H 0.191 0.809 40 H 0.173 0.827 41 H 0.227 0.773 42 H 0.369 0.631 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 18.611 19.110 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.059 0.941 7 C -0.208 4.208 8 N -0.352 5.352 9 C 0.329 3.671 10 O -0.443 6.443 11 C -0.123 4.123 12 C -0.079 4.079 13 C -0.119 4.119 14 C -0.064 4.064 15 C -0.332 4.332 16 S 0.407 5.593 17 C -0.245 4.245 18 N -0.214 5.214 19 C -0.031 4.031 20 N -0.373 5.373 21 C -0.356 4.356 22 H 0.087 0.913 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.789 3.211 26 H -0.230 1.230 27 H -0.219 1.219 28 H -0.189 1.189 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.186 0.814 39 H 0.209 0.791 40 H 0.190 0.810 41 H 0.243 0.757 42 H 0.201 0.799 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.804 18.398 18.374 26.641 hybrid contribution -0.313 -0.923 -1.383 1.692 sum 5.491 17.475 16.991 24.984 Atomic orbital electron populations 1.22294 0.97404 1.00901 1.00850 1.20548 0.92819 0.95233 0.85924 0.93931 1.22084 0.92266 1.02375 0.98727 1.20825 0.95881 0.80840 0.98149 0.94066 1.22071 1.00030 1.00322 0.98364 1.45714 1.15705 1.11581 1.62165 1.18522 0.82435 0.88071 0.78089 1.90834 1.52492 1.57219 1.43786 1.19781 0.93582 0.93878 1.05073 1.21671 0.98653 0.93533 0.94050 1.21626 0.96340 0.95146 0.98807 1.21066 0.91818 0.99822 0.93690 1.24311 1.01532 0.97524 1.09859 1.83475 1.07622 1.10874 1.57350 1.28902 0.99623 0.95432 1.00535 1.65955 1.01422 1.39565 1.14419 1.19128 0.94426 0.89776 0.99781 1.42620 1.78212 1.10080 1.06354 1.19500 1.33841 0.93731 0.88501 0.91264 1.25425 1.03646 0.96850 1.01217 1.69797 1.53186 1.10082 1.29013 0.85346 0.77342 0.77875 0.80569 1.22980 1.21902 1.18872 0.93971 0.90095 0.95232 0.90523 0.86979 0.95055 0.89532 0.91117 0.75124 0.81378 0.79144 0.81004 0.75700 0.79925 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 2 C 0.16 6.03 2.84 44.99 0.13 6.16 16 3 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 4 C -0.12 -3.35 4.29 30.59 0.13 -3.22 16 5 C 0.15 5.04 2.52 44.99 0.11 5.16 16 6 H 0.04 1.98 7.05 -2.38 -0.02 1.96 16 7 C -0.15 -4.27 9.48 71.98 0.68 -3.59 16 8 N -0.70 -21.50 4.40 -445.82 -1.96 -23.46 16 9 C 0.54 21.12 7.72 86.65 0.67 21.79 16 10 O -0.56 -28.86 15.44 -4.06 -0.06 -28.93 16 11 C -0.12 -3.68 5.92 -19.71 -0.12 -3.79 16 12 C -0.06 -1.10 9.50 22.42 0.21 -0.89 16 13 C -0.10 -1.23 10.02 22.20 0.22 -1.01 16 14 C -0.04 -0.63 10.05 22.43 0.23 -0.41 16 15 C -0.21 -5.05 6.55 22.91 0.15 -4.90 16 16 S 0.15 2.90 23.18 -56.49 -1.31 1.59 16 17 C 0.06 1.50 12.12 130.78 1.59 3.09 16 18 N -0.50 -18.56 9.43 -194.19 -1.83 -20.39 16 19 C 0.09 3.05 6.73 40.28 0.27 3.32 16 20 N -0.73 -37.64 4.49 -322.94 -1.45 -39.09 16 21 C -0.22 -12.99 9.93 84.03 0.83 -12.16 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -63.37 13.06 21.65 0.28 -63.09 16 25 Si 0.96 49.84 29.55 68.60 2.03 51.87 16 26 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 27 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 28 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.41 8.73 6.60 -92.71 -0.61 8.12 16 38 H 0.17 1.97 6.34 -2.91 -0.02 1.95 16 39 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.23 4.17 8.06 -2.92 -0.02 4.15 16 42 H 0.37 20.78 7.80 -92.71 -0.72 20.06 16 43 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -92.25 374.32 1.67 -90.58 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.29 Total: 30.10 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.26 Total: 0.81 kcal Atomic # 7 Polarization: -141.08 SS G_CDS: -4.96 Total: -146.03 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.03 Total: 51.87 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -92.25 1.67 -90.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.753 kcal (2) G-P(sol) polarization free energy of solvation -92.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds