Wall clock time and date at job start Tue Mar 31 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47089 * 2 1 4 4 C 1.53008 * 109.47309 * 240.00206 * 2 1 3 5 5 C 1.52992 * 109.46938 * 174.99733 * 4 2 1 6 6 H 1.08995 * 109.47478 * 304.99655 * 5 4 2 7 7 C 1.53006 * 109.46747 * 185.00068 * 5 4 2 8 8 N 1.46504 * 109.47114 * 65.00370 * 5 4 2 9 9 C 1.36939 * 119.99496 * 204.99705 * 8 5 4 10 10 H 1.07996 * 120.00559 * 359.97438 * 9 8 5 11 11 C 1.38817 * 119.99315 * 179.97438 * 9 8 5 12 12 N 1.31613 * 120.00349 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99433 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47446 * 90.00085 * 13 11 9 15 15 H 1.48502 * 109.46646 * 209.99820 * 13 11 9 16 16 H 1.48500 * 109.47334 * 329.99355 * 13 11 9 17 17 N 1.46496 * 109.47256 * 120.00077 * 2 1 3 18 18 C 1.34776 * 119.99806 * 275.00022 * 17 2 1 19 19 O 1.21608 * 120.00169 * 0.02562 * 18 17 2 20 20 C 1.47395 * 119.99704 * 179.97438 * 18 17 2 21 21 C 1.38870 * 120.02102 * 0.02562 * 20 18 17 22 22 C 1.38236 * 120.46237 * 179.97438 * 21 20 18 23 23 C 1.37955 * 120.27290 * 359.97438 * 22 21 20 24 24 C 1.39178 * 120.45392 * 0.04763 * 23 22 21 25 25 S 1.76148 * 131.63703 * 179.97438 * 24 23 22 26 26 C 1.70688 * 90.71141 * 179.97438 * 25 24 23 27 27 N 1.28149 * 111.37820 * 0.02562 * 26 25 24 28 28 C 1.33649 * 118.02208 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47378 * 59.99970 * 1 2 3 30 30 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47341 * 299.99740 * 1 2 3 32 32 H 1.08998 * 109.46812 * 295.00061 * 4 2 1 33 33 H 1.09004 * 109.46520 * 54.99826 * 4 2 1 34 34 H 1.09002 * 109.46688 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46638 * 299.99590 * 7 5 4 36 36 H 1.08994 * 109.47479 * 60.00058 * 7 5 4 37 37 H 0.96996 * 119.99884 * 24.99132 * 8 5 4 38 38 H 0.96999 * 119.99977 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00136 * 95.00318 * 17 2 1 40 40 H 1.08001 * 119.76909 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.86154 * 180.02562 * 22 21 20 42 42 H 1.08005 * 119.76719 * 180.02562 * 23 22 21 43 43 H 1.07998 * 124.30628 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0645 -1.2249 -2.6241 8 7 4.1537 -1.3341 -0.1824 9 6 5.3944 -0.9854 0.2806 10 1 5.9389 -0.1793 -0.1884 11 6 5.9521 -1.6683 1.3528 12 7 5.2883 -2.6504 1.9247 13 14 7.6442 -1.1921 1.9849 14 1 7.5054 -0.1546 3.0382 15 1 8.3146 -2.3887 2.5540 16 1 8.4579 -0.6547 0.8649 17 7 2.0183 -0.6906 1.1961 18 6 2.1471 -0.0182 2.3571 19 8 1.8574 1.1616 2.4118 20 6 2.6379 -0.7132 3.5606 21 6 2.9683 -2.0606 3.4987 22 6 3.4300 -2.7213 4.6218 23 6 3.5679 -2.0474 5.8176 24 6 3.2436 -0.6969 5.9077 25 16 3.3033 0.4335 7.2573 26 6 2.7211 1.6894 6.2587 27 7 2.5157 1.2780 5.0626 28 6 2.7737 -0.0039 4.7865 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 5.1509 -1.1483 -2.6698 35 1 3.7723 -2.2740 -2.6700 36 1 3.6264 -0.6885 -3.4658 37 1 3.6647 -2.0584 0.2386 38 1 5.6779 -3.1272 2.6742 39 1 2.2491 -1.6317 1.1525 40 1 2.8646 -2.5959 2.5664 41 1 3.6845 -3.7692 4.5626 42 1 3.9297 -2.5715 6.6899 43 1 2.5471 2.7016 6.5928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134361155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:48 Heat of formation + Delta-G solvation = 41.887390 kcal Electronic energy + Delta-G solvation = -27499.487709 eV Core-core repulsion = 23864.914698 eV Total energy + Delta-G solvation = -3634.573011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.24193 -38.81536 -36.68206 -36.32579 -34.11577 -32.38872 -31.33856 -29.83411 -29.45553 -28.49376 -26.32198 -24.71197 -23.75524 -23.64220 -21.49995 -20.79381 -20.19159 -19.75800 -18.16932 -17.22679 -16.64756 -15.97029 -15.74675 -15.09359 -14.75893 -14.66923 -14.59607 -14.04136 -13.80048 -13.72385 -13.41959 -13.08110 -12.84402 -12.69138 -12.19608 -12.12518 -11.90198 -11.73504 -11.64996 -11.55872 -11.41293 -11.01442 -10.88083 -10.83639 -10.72209 -10.34087 -10.26735 -9.92215 -9.73123 -9.67160 -9.37559 -8.99687 -8.92994 -8.33944 -8.25871 -7.72044 -6.96221 -5.87828 -3.08194 0.62609 1.38730 1.55225 1.97240 2.81738 3.40507 3.45461 3.49030 3.49416 3.85896 4.34373 4.46109 4.55753 4.95159 5.12698 5.33212 5.38356 5.43739 5.48762 5.54736 5.58833 5.62970 5.71396 5.88087 5.96239 5.98889 6.03044 6.12499 6.17582 6.24683 6.38779 6.40160 6.46966 6.56584 6.60071 6.62217 6.81582 6.84928 7.04338 7.09175 7.26088 7.65944 8.00439 8.28633 8.34523 9.05231 9.45517 9.97786 10.33981 11.34843 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.005627 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.010921 B = 4975.083544 C = 6551.027668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.217 4.217 10 H 0.067 0.933 11 C -0.010 4.010 12 N -0.926 5.926 13 Si 0.898 3.102 14 H -0.293 1.293 15 H -0.292 1.292 16 H -0.285 1.285 17 N -0.697 5.697 18 C 0.566 3.434 19 O -0.534 6.534 20 C -0.085 4.085 21 C -0.006 4.006 22 C -0.092 4.092 23 C -0.065 4.065 24 C -0.191 4.191 25 S 0.054 5.946 26 C 0.058 3.942 27 N -0.431 5.431 28 C 0.124 3.876 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -0.307 4.466 9.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.357 5.357 9 C -0.348 4.348 10 H 0.085 0.915 11 C -0.205 4.205 12 N -0.575 5.575 13 Si 0.730 3.270 14 H -0.220 1.220 15 H -0.219 1.219 16 H -0.211 1.211 17 N -0.351 5.351 18 C 0.353 3.647 19 O -0.411 6.411 20 C -0.092 4.092 21 C -0.028 4.028 22 C -0.113 4.113 23 C -0.088 4.088 24 C -0.310 4.310 25 S 0.306 5.694 26 C -0.247 4.247 27 N -0.141 5.141 28 C 0.003 3.997 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.211 0.789 38 H 0.064 0.936 39 H 0.239 0.761 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.203 1.042 5.127 9.729 hybrid contribution 1.254 -0.736 -0.278 1.480 sum -6.949 0.306 4.849 8.479 Atomic orbital electron populations 1.22205 0.96349 1.01548 1.01933 1.20774 0.92441 0.97742 0.84387 0.89927 1.22209 0.97682 1.00586 0.96698 1.20302 0.89799 0.95915 0.88134 0.93371 1.22407 1.01496 1.00325 0.98042 1.42452 1.18617 1.39824 1.34784 1.19231 0.92971 1.12532 1.10070 0.91528 1.24465 0.98353 0.98838 0.98831 1.69488 1.37631 1.24546 1.25876 0.86304 0.84659 0.77257 0.78776 1.22023 1.21854 1.21077 1.45880 1.66454 1.14169 1.08617 1.17791 0.77551 0.86413 0.82912 1.90757 1.50180 1.15105 1.85101 1.19504 1.04673 0.93709 0.91332 1.21286 0.90715 0.92198 0.98639 1.21025 0.98195 1.00588 0.91491 1.20368 0.99099 0.90620 0.98744 1.23633 1.10947 0.99953 0.96443 1.83668 1.67940 1.03448 1.14325 1.28201 1.01298 1.04072 0.91154 1.65897 1.16357 1.14069 1.17792 1.18732 0.99972 0.87483 0.93544 0.92207 0.92870 0.92369 0.91770 0.90799 0.92904 0.93599 0.94557 0.78864 0.93563 0.76103 0.83330 0.84541 0.85695 0.78529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 2 C 0.15 2.49 2.57 -67.93 -0.17 2.32 16 3 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 4 C -0.13 -1.97 4.43 -26.73 -0.12 -2.09 16 5 C 0.17 3.07 2.89 -67.93 -0.20 2.87 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 8 N -0.71 -15.52 3.84 -53.42 -0.21 -15.72 16 9 C -0.22 -5.52 9.93 -15.06 -0.15 -5.67 16 10 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -22.85 10.73 55.49 0.60 -22.25 16 13 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 14 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 N -0.70 -12.83 3.75 -54.89 -0.21 -13.04 16 18 C 0.57 12.18 7.72 -12.53 -0.10 12.08 16 19 O -0.53 -12.94 15.44 5.27 0.08 -12.85 16 20 C -0.09 -1.76 5.92 -104.39 -0.62 -2.38 16 21 C -0.01 -0.12 7.81 -39.35 -0.31 -0.42 16 22 C -0.09 -1.49 10.02 -39.69 -0.40 -1.88 16 23 C -0.07 -1.03 10.05 -39.34 -0.40 -1.42 16 24 C -0.19 -3.36 6.55 -38.60 -0.25 -3.62 16 25 S 0.05 0.77 23.18 -107.50 -2.49 -1.73 16 26 C 0.06 0.89 12.12 51.23 0.62 1.51 16 27 N -0.43 -8.68 9.43 -12.74 -0.12 -8.81 16 28 C 0.12 2.55 6.73 -84.89 -0.57 1.98 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.38 8.19 5.70 -40.82 -0.23 7.96 16 38 H 0.25 6.26 8.31 -40.82 -0.34 5.92 16 39 H 0.40 7.15 4.50 -40.82 -0.18 6.97 16 40 H 0.15 2.71 5.79 -52.49 -0.30 2.40 16 41 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.20 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -30.45 365.56 -9.64 -40.09 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.73 Total: 13.25 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.05 Total: -1.33 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.06 Total: -59.82 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.45 -9.64 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.977 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds