Wall clock time and date at job start Tue Mar 31 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47089 * 2 1 4 4 C 1.53008 * 109.47309 * 240.00206 * 2 1 3 5 5 C 1.52992 * 109.46938 * 174.99733 * 4 2 1 6 6 H 1.08995 * 109.47478 * 304.99655 * 5 4 2 7 7 C 1.53006 * 109.46747 * 185.00068 * 5 4 2 8 8 N 1.46504 * 109.47114 * 65.00370 * 5 4 2 9 9 C 1.36939 * 119.99496 * 204.99705 * 8 5 4 10 10 H 1.07996 * 120.00559 * 359.97438 * 9 8 5 11 11 C 1.38817 * 119.99315 * 179.97438 * 9 8 5 12 12 N 1.31613 * 120.00349 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99433 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47446 * 90.00085 * 13 11 9 15 15 H 1.48502 * 109.46646 * 209.99820 * 13 11 9 16 16 H 1.48500 * 109.47334 * 329.99355 * 13 11 9 17 17 N 1.46496 * 109.47256 * 120.00077 * 2 1 3 18 18 C 1.34776 * 119.99806 * 275.00022 * 17 2 1 19 19 O 1.21608 * 120.00169 * 0.02562 * 18 17 2 20 20 C 1.47395 * 119.99704 * 179.97438 * 18 17 2 21 21 C 1.38870 * 120.02102 * 0.02562 * 20 18 17 22 22 C 1.38236 * 120.46237 * 179.97438 * 21 20 18 23 23 C 1.37955 * 120.27290 * 359.97438 * 22 21 20 24 24 C 1.39178 * 120.45392 * 0.04763 * 23 22 21 25 25 S 1.76148 * 131.63703 * 179.97438 * 24 23 22 26 26 C 1.70688 * 90.71141 * 179.97438 * 25 24 23 27 27 N 1.28149 * 111.37820 * 0.02562 * 26 25 24 28 28 C 1.33649 * 118.02208 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47378 * 59.99970 * 1 2 3 30 30 H 1.09003 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47341 * 299.99740 * 1 2 3 32 32 H 1.08998 * 109.46812 * 295.00061 * 4 2 1 33 33 H 1.09004 * 109.46520 * 54.99826 * 4 2 1 34 34 H 1.09002 * 109.46688 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46638 * 299.99590 * 7 5 4 36 36 H 1.08994 * 109.47479 * 60.00058 * 7 5 4 37 37 H 0.96996 * 119.99884 * 24.99132 * 8 5 4 38 38 H 0.96999 * 119.99977 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00136 * 95.00318 * 17 2 1 40 40 H 1.08001 * 119.76909 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.86154 * 180.02562 * 22 21 20 42 42 H 1.08005 * 119.76719 * 180.02562 * 23 22 21 43 43 H 1.07998 * 124.30628 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0645 -1.2249 -2.6241 8 7 4.1537 -1.3341 -0.1824 9 6 5.3944 -0.9854 0.2806 10 1 5.9389 -0.1793 -0.1884 11 6 5.9521 -1.6683 1.3528 12 7 5.2883 -2.6504 1.9247 13 14 7.6442 -1.1921 1.9849 14 1 7.5054 -0.1546 3.0382 15 1 8.3146 -2.3887 2.5540 16 1 8.4579 -0.6547 0.8649 17 7 2.0183 -0.6906 1.1961 18 6 2.1471 -0.0182 2.3571 19 8 1.8574 1.1616 2.4118 20 6 2.6379 -0.7132 3.5606 21 6 2.9683 -2.0606 3.4987 22 6 3.4300 -2.7213 4.6218 23 6 3.5679 -2.0474 5.8176 24 6 3.2436 -0.6969 5.9077 25 16 3.3033 0.4335 7.2573 26 6 2.7211 1.6894 6.2587 27 7 2.5157 1.2780 5.0626 28 6 2.7737 -0.0039 4.7865 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 5.1509 -1.1483 -2.6698 35 1 3.7723 -2.2740 -2.6700 36 1 3.6264 -0.6885 -3.4658 37 1 3.6647 -2.0584 0.2386 38 1 5.6779 -3.1272 2.6742 39 1 2.2491 -1.6317 1.1525 40 1 2.8646 -2.5959 2.5664 41 1 3.6845 -3.7692 4.5626 42 1 3.9297 -2.5715 6.6899 43 1 2.5471 2.7016 6.5928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134361155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:47 Heat of formation + Delta-G solvation = 23.563639 kcal Electronic energy + Delta-G solvation = -27500.282287 eV Core-core repulsion = 23864.914698 eV Total energy + Delta-G solvation = -3635.367588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62380 -40.27433 -38.19832 -37.68415 -35.72690 -34.06225 -32.82649 -31.27887 -30.77026 -30.08474 -27.58993 -25.98949 -25.55195 -25.05932 -22.85028 -22.16273 -21.63524 -21.23507 -19.51561 -19.08242 -18.02760 -17.36594 -17.09167 -16.68304 -16.28249 -16.09100 -15.91297 -15.61040 -15.44968 -15.22981 -14.85625 -14.48079 -14.25551 -14.16897 -13.58546 -13.47416 -13.31033 -13.15831 -12.93572 -12.91127 -12.80341 -12.71119 -12.58513 -12.27827 -12.16275 -12.11943 -11.69582 -11.58002 -11.39651 -11.01846 -10.84778 -10.80723 -10.36061 -9.82203 -9.62320 -9.00862 -8.72974 -7.82298 -5.00393 -0.68399 0.04641 0.35092 0.71783 1.41064 1.46683 1.49005 1.51467 2.00272 2.43703 2.60602 2.98018 3.16902 3.51868 3.65080 3.83491 4.02368 4.05137 4.17286 4.19775 4.30136 4.35412 4.40141 4.58056 4.66260 4.69077 4.81000 4.84712 4.88647 4.93548 5.08644 5.11932 5.15636 5.18568 5.26608 5.37172 5.43643 5.48057 5.63150 5.65465 5.77825 5.83514 6.43063 6.70927 6.81552 7.49187 7.51726 8.19488 8.49448 9.38731 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.005627 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.010921 B = 4975.083544 C = 6551.027668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.050 0.950 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.023 0.977 7 C -0.152 4.152 8 N -0.716 5.716 9 C -0.229 4.229 10 H 0.047 0.953 11 C -0.038 4.038 12 N -0.921 5.921 13 Si 0.930 3.070 14 H -0.314 1.314 15 H -0.287 1.287 16 H -0.288 1.288 17 N -0.688 5.688 18 C 0.557 3.443 19 O -0.575 6.575 20 C -0.124 4.124 21 C -0.003 4.003 22 C -0.100 4.100 23 C -0.053 4.053 24 C -0.221 4.221 25 S 0.135 5.865 26 C 0.059 3.941 27 N -0.490 5.490 28 C 0.096 3.904 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.403 0.597 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 -1.572 5.223 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.068 0.932 4 C -0.156 4.156 5 C 0.053 3.947 6 H 0.041 0.959 7 C -0.211 4.211 8 N -0.359 5.359 9 C -0.362 4.362 10 H 0.065 0.935 11 C -0.234 4.234 12 N -0.570 5.570 13 Si 0.764 3.236 14 H -0.243 1.243 15 H -0.213 1.213 16 H -0.214 1.214 17 N -0.340 5.340 18 C 0.345 3.655 19 O -0.457 6.457 20 C -0.131 4.131 21 C -0.025 4.025 22 C -0.122 4.122 23 C -0.075 4.075 24 C -0.340 4.340 25 S 0.388 5.612 26 C -0.245 4.245 27 N -0.202 5.202 28 C -0.026 4.026 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.063 0.937 39 H 0.242 0.758 40 H 0.162 0.838 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.893 -0.253 5.872 10.660 hybrid contribution 1.458 -0.256 -0.368 1.526 sum -7.435 -0.509 5.504 9.265 Atomic orbital electron populations 1.22095 0.93909 1.02774 1.02075 1.20934 0.94301 0.96120 0.84447 0.93174 1.22125 0.94815 1.01676 0.97011 1.20481 0.92161 0.94222 0.87866 0.95901 1.22248 0.99974 1.00945 0.97969 1.42424 1.17590 1.40070 1.35822 1.19188 0.94436 1.12164 1.10395 0.93502 1.24778 0.99547 0.99608 0.99427 1.69513 1.37447 1.24289 1.25758 0.85818 0.83764 0.76416 0.77615 1.24308 1.21334 1.21413 1.45899 1.65518 1.14109 1.08506 1.18157 0.77170 0.86151 0.84002 1.90705 1.52341 1.16737 1.85868 1.19681 1.06997 0.94851 0.91566 1.21316 0.90364 0.91403 0.99374 1.21344 0.97949 1.01808 0.91059 1.20837 0.96926 0.90017 0.99737 1.24118 1.11006 1.01319 0.97507 1.83294 1.66037 1.00664 1.11179 1.28927 0.98963 1.06123 0.90445 1.65924 1.19280 1.14732 1.20292 1.19023 1.00821 0.88263 0.94448 0.89483 0.91006 0.94799 0.90099 0.87323 0.95363 0.92978 0.91399 0.78902 0.93660 0.75787 0.83781 0.81942 0.81954 0.74915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.48 71.98 0.68 -3.34 16 2 C 0.15 4.83 2.57 44.99 0.12 4.95 16 3 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 4 C -0.12 -3.28 4.43 30.59 0.14 -3.15 16 5 C 0.16 5.85 2.89 44.99 0.13 5.98 16 6 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 7 C -0.15 -4.86 9.49 71.98 0.68 -4.18 16 8 N -0.72 -31.53 3.84 -322.94 -1.24 -32.77 16 9 C -0.23 -11.97 9.93 84.03 0.83 -11.14 16 10 H 0.05 2.58 7.83 -2.91 -0.02 2.56 16 11 C -0.04 -2.00 5.50 84.86 0.47 -1.54 16 12 N -0.92 -45.32 10.73 21.65 0.23 -45.08 16 13 Si 0.93 45.49 29.55 68.60 2.03 47.52 16 14 H -0.31 -16.34 7.11 99.48 0.71 -15.64 16 15 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 16 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 17 N -0.69 -26.08 3.75 -445.82 -1.67 -27.75 16 18 C 0.56 25.22 7.72 86.65 0.67 25.88 16 19 O -0.58 -29.68 15.44 -4.06 -0.06 -29.74 16 20 C -0.12 -5.33 5.92 -19.71 -0.12 -5.44 16 21 C 0.00 -0.11 7.81 22.42 0.17 0.07 16 22 C -0.10 -3.12 10.02 22.20 0.22 -2.90 16 23 C -0.05 -1.55 10.05 22.43 0.23 -1.32 16 24 C -0.22 -7.51 6.55 22.91 0.15 -7.36 16 25 S 0.14 3.48 23.18 -56.49 -1.31 2.17 16 26 C 0.06 1.74 12.12 130.78 1.58 3.33 16 27 N -0.49 -20.18 9.43 -194.19 -1.83 -22.01 16 28 C 0.10 4.03 6.73 40.28 0.27 4.30 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.38 16.42 5.70 -92.71 -0.53 15.89 16 38 H 0.25 12.29 8.31 -92.71 -0.77 11.52 16 39 H 0.40 14.65 4.50 -92.71 -0.42 14.24 16 40 H 0.14 5.32 5.79 -2.91 -0.02 5.31 16 41 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 43 H 0.23 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -70.30 365.56 2.48 -67.82 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.10 Total: 35.70 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 6.23 Total: 4.14 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -4.51 Total: -127.61 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.31 Total: 2.17 kcal Total: -70.30 2.48 -67.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.388 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds