Wall clock time and date at job start Tue Mar 31 2020 18:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21612 * 120.00049 * 0.02562 * 9 8 5 11 11 C 1.47382 * 120.00033 * 179.97438 * 9 8 5 12 12 N 1.29689 * 121.82673 * 0.02755 * 11 9 8 13 13 S 1.56011 * 111.73917 * 179.97438 * 12 11 9 14 14 C 1.76247 * 97.56315 * 0.02562 * 13 12 11 15 15 C 1.38695 * 134.18666 * 180.02562 * 14 13 12 16 16 C 1.36806 * 119.63071 * 179.97438 * 15 14 13 17 17 C 1.38911 * 120.30613 * 0.02562 * 16 15 14 18 18 C 1.36333 * 121.03417 * 359.97438 * 17 16 15 19 19 C 1.40419 * 119.96243 * 359.73199 * 18 17 16 20 20 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 21 21 C 1.36940 * 119.99786 * 274.99596 * 20 2 1 22 22 H 1.07997 * 119.99662 * 359.97438 * 21 20 2 23 23 C 1.38810 * 119.99761 * 180.02562 * 21 20 2 24 24 N 1.31617 * 119.99676 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00131 * 0.02562 * 23 21 20 26 26 H 1.48509 * 109.47271 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47119 * 209.99857 * 25 23 21 28 28 H 1.48497 * 109.47224 * 330.00092 * 25 23 21 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 36 36 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 37 37 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 38 38 H 1.07995 * 120.18807 * 359.94883 * 15 14 13 39 39 H 1.07995 * 119.85280 * 179.97438 * 16 15 14 40 40 H 1.08003 * 119.48216 * 179.97438 * 17 16 15 41 41 H 1.08002 * 120.01753 * 180.02562 * 18 17 16 42 42 H 0.97003 * 120.00154 * 95.00403 * 20 2 1 43 43 H 0.97002 * 119.99836 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9380 0.4316 -0.5725 11 6 5.5470 2.6243 -1.2670 12 7 4.7469 3.4878 -1.8112 13 16 5.3915 4.9067 -1.8844 14 6 6.9358 4.4986 -1.1395 15 6 8.0814 5.2179 -0.8334 16 6 9.1382 4.5854 -0.2378 17 6 9.0672 3.2303 0.0594 18 6 7.9509 2.5043 -0.2328 19 6 6.8478 3.1272 -0.8386 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6122 -0.6618 3.5090 24 7 2.7384 -0.0051 4.6426 25 14 3.0576 -2.4739 3.4248 26 1 4.4905 -2.6151 3.0610 27 1 2.8185 -3.1044 4.7479 28 1 2.2182 -3.1429 2.3987 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 5.1715 -1.3620 -2.5381 35 1 3.8001 -2.4820 -2.3595 36 1 3.6546 -1.0595 -3.4193 37 1 3.3286 1.4128 -1.9028 38 1 8.1392 6.2713 -1.0642 39 1 10.0322 5.1420 0.0018 40 1 9.9095 2.7443 0.5292 41 1 7.9132 1.4516 0.0058 42 1 2.2490 -1.6319 1.1526 43 1 3.0623 -0.4622 5.4345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134418168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:14 Heat of formation + Delta-G solvation = 27.286820 kcal Electronic energy + Delta-G solvation = -26268.683708 eV Core-core repulsion = 22633.477569 eV Total energy + Delta-G solvation = -3635.206139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62361 -39.16999 -37.19918 -36.70194 -34.59311 -32.14880 -31.25505 -31.04641 -30.49182 -29.20253 -26.46617 -26.03626 -23.36520 -23.22473 -22.66307 -21.02044 -20.29773 -19.81322 -18.78742 -17.79412 -17.34857 -16.55837 -15.83896 -15.46361 -15.36790 -14.88731 -14.75012 -14.28714 -14.19561 -13.93358 -13.67496 -13.54546 -13.03001 -12.64297 -12.46801 -12.36419 -12.29493 -12.10903 -11.96210 -11.89137 -11.69257 -11.33021 -11.21370 -10.88447 -10.83350 -10.63285 -10.49002 -10.26554 -9.94829 -9.93365 -9.75062 -9.51880 -9.22327 -8.87094 -8.82683 -8.00582 -7.20024 -5.69872 -3.04698 0.23589 0.94570 1.18398 1.56174 1.64579 3.16527 3.26526 3.42813 3.46564 3.51257 3.59508 4.20783 4.50989 4.66164 4.75123 4.92295 5.02482 5.09899 5.26015 5.26249 5.31795 5.32836 5.54025 5.60438 5.73361 5.77951 5.81325 5.83763 5.89492 5.97418 6.02737 6.19200 6.20986 6.25229 6.31584 6.34803 6.45652 6.52190 6.64400 6.72769 6.84695 7.01915 7.69027 8.05742 8.35237 8.48894 9.27603 10.00353 10.19688 11.48845 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.003913 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.228587 B = 7154.764621 C = 8008.173155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.055 0.945 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.591 3.409 10 O -0.520 6.520 11 C 0.100 3.900 12 N -0.489 5.489 13 S 0.378 5.622 14 C -0.199 4.199 15 C -0.077 4.077 16 C -0.089 4.089 17 C -0.121 4.121 18 C -0.038 4.038 19 C -0.087 4.087 20 N -0.745 5.745 21 C -0.237 4.237 22 H 0.087 0.913 23 C 0.005 3.995 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.404 0.596 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.360 0.640 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 8.864 -17.732 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.346 5.346 9 C 0.372 3.628 10 O -0.394 6.394 11 C -0.089 4.089 12 N -0.315 5.315 13 S 0.537 5.463 14 C -0.320 4.320 15 C -0.099 4.099 16 C -0.112 4.112 17 C -0.141 4.141 18 C -0.060 4.060 19 C -0.097 4.097 20 N -0.389 5.389 21 C -0.367 4.367 22 H 0.105 0.895 23 C -0.190 4.190 24 N -0.584 5.584 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.239 0.761 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.192 0.808 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.308 9.633 -18.190 22.196 hybrid contribution 1.044 -2.075 0.806 2.459 sum 9.352 7.558 -17.384 21.137 Atomic orbital electron populations 1.22413 0.98937 1.00803 1.00351 1.20205 0.91826 0.95881 0.85478 0.92737 1.22223 0.93570 1.02242 0.99297 1.21099 0.95324 0.79918 0.99855 0.87964 1.22198 1.01714 1.00048 0.98077 1.45784 1.15823 1.11797 1.61187 1.17039 0.82676 0.84494 0.78635 1.90785 1.51309 1.54314 1.43036 1.21996 0.90683 0.95358 1.00817 1.71420 1.33218 1.05993 1.20861 1.81305 1.00415 1.09458 1.55137 1.24256 1.02751 0.97764 1.07207 1.19903 0.90905 0.99464 0.99633 1.21069 0.98245 0.94878 0.96993 1.20932 0.98398 0.94314 1.00406 1.20895 0.90010 1.01485 0.93577 1.19604 0.94569 0.92440 1.03113 1.42775 1.79713 1.09202 1.07166 1.19009 1.36670 0.95320 0.85711 0.89528 1.24629 1.01435 0.97370 0.95572 1.69702 1.52859 1.35507 1.00290 0.86596 0.78672 0.86925 0.76659 1.20913 1.21899 1.20374 0.93616 0.92429 0.94348 0.91417 0.90506 0.92292 0.91609 0.92792 0.76070 0.84920 0.84853 0.84860 0.83314 0.80764 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.18 3.31 2.84 -67.93 -0.19 3.12 16 3 H 0.05 1.10 7.56 -51.93 -0.39 0.71 16 4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.24 2.52 -67.93 -0.17 2.07 16 6 H 0.10 2.02 7.05 -51.93 -0.37 1.65 16 7 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 8 N -0.69 -10.95 4.44 -54.89 -0.24 -11.19 16 9 C 0.59 10.49 7.77 -12.54 -0.10 10.39 16 10 O -0.52 -10.52 14.67 5.27 0.08 -10.44 16 11 C 0.10 1.61 6.82 -81.99 -0.56 1.05 16 12 N -0.49 -7.05 10.49 28.25 0.30 -6.76 16 13 S 0.38 4.33 23.36 -107.50 -2.51 1.82 16 14 C -0.20 -2.45 6.73 -38.49 -0.26 -2.71 16 15 C -0.08 -0.74 10.03 -39.93 -0.40 -1.14 16 16 C -0.09 -0.79 10.00 -39.85 -0.40 -1.19 16 17 C -0.12 -1.27 9.93 -40.02 -0.40 -1.67 16 18 C -0.04 -0.52 9.57 -39.45 -0.38 -0.90 16 19 C -0.09 -1.29 6.10 -105.09 -0.64 -1.93 16 20 N -0.75 -17.62 4.30 -53.42 -0.23 -17.85 16 21 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.94 -30.15 13.97 55.49 0.78 -29.38 16 25 Si 0.88 22.81 27.74 -169.99 -4.71 18.10 16 26 H -0.28 -7.39 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 5.68 8.04 -40.82 -0.33 5.35 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.15 2.22 6.64 -52.49 -0.35 1.87 16 42 H 0.36 8.42 5.66 -40.82 -0.23 8.18 16 43 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -34.59 371.81 -10.01 -44.60 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.91 Total: 11.68 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.16 Total: -6.18 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 0.60 Total: -65.17 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.10 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.51 Total: 1.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.59 -10.01 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.887 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds