Wall clock time and date at job start Tue Mar 31 2020 18:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21612 * 120.00049 * 0.02562 * 9 8 5 11 11 C 1.47382 * 120.00033 * 179.97438 * 9 8 5 12 12 N 1.29689 * 121.82673 * 0.02755 * 11 9 8 13 13 S 1.56011 * 111.73917 * 179.97438 * 12 11 9 14 14 C 1.76247 * 97.56315 * 0.02562 * 13 12 11 15 15 C 1.38695 * 134.18666 * 180.02562 * 14 13 12 16 16 C 1.36806 * 119.63071 * 179.97438 * 15 14 13 17 17 C 1.38911 * 120.30613 * 0.02562 * 16 15 14 18 18 C 1.36333 * 121.03417 * 359.97438 * 17 16 15 19 19 C 1.40419 * 119.96243 * 359.73199 * 18 17 16 20 20 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 21 21 C 1.36940 * 119.99786 * 274.99596 * 20 2 1 22 22 H 1.07997 * 119.99662 * 359.97438 * 21 20 2 23 23 C 1.38810 * 119.99761 * 180.02562 * 21 20 2 24 24 N 1.31617 * 119.99676 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00131 * 0.02562 * 23 21 20 26 26 H 1.48509 * 109.47271 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47119 * 209.99857 * 25 23 21 28 28 H 1.48497 * 109.47224 * 330.00092 * 25 23 21 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 36 36 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 37 37 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 38 38 H 1.07995 * 120.18807 * 359.94883 * 15 14 13 39 39 H 1.07995 * 119.85280 * 179.97438 * 16 15 14 40 40 H 1.08003 * 119.48216 * 179.97438 * 17 16 15 41 41 H 1.08002 * 120.01753 * 180.02562 * 18 17 16 42 42 H 0.97003 * 120.00154 * 95.00403 * 20 2 1 43 43 H 0.97002 * 119.99836 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9380 0.4316 -0.5725 11 6 5.5470 2.6243 -1.2670 12 7 4.7469 3.4878 -1.8112 13 16 5.3915 4.9067 -1.8844 14 6 6.9358 4.4986 -1.1395 15 6 8.0814 5.2179 -0.8334 16 6 9.1382 4.5854 -0.2378 17 6 9.0672 3.2303 0.0594 18 6 7.9509 2.5043 -0.2328 19 6 6.8478 3.1272 -0.8386 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6122 -0.6618 3.5090 24 7 2.7384 -0.0051 4.6426 25 14 3.0576 -2.4739 3.4248 26 1 4.4905 -2.6151 3.0610 27 1 2.8185 -3.1044 4.7479 28 1 2.2182 -3.1429 2.3987 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 5.1715 -1.3620 -2.5381 35 1 3.8001 -2.4820 -2.3595 36 1 3.6546 -1.0595 -3.4193 37 1 3.3286 1.4128 -1.9028 38 1 8.1392 6.2713 -1.0642 39 1 10.0322 5.1420 0.0018 40 1 9.9095 2.7443 0.5292 41 1 7.9132 1.4516 0.0058 42 1 2.2490 -1.6319 1.1526 43 1 3.0623 -0.4622 5.4345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134418168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:13 Heat of formation + Delta-G solvation = 3.681945 kcal Electronic energy + Delta-G solvation = -26269.707293 eV Core-core repulsion = 22633.477569 eV Total energy + Delta-G solvation = -3636.229723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71856 -40.31166 -38.50775 -37.90235 -36.20512 -34.12531 -32.36818 -32.11148 -31.55314 -30.99492 -27.68807 -27.18669 -25.37888 -24.19402 -23.64870 -22.28230 -21.60653 -21.35137 -19.84028 -19.67572 -18.65062 -17.59635 -17.07326 -16.75541 -16.51571 -16.24090 -16.02700 -15.78279 -15.37149 -15.28188 -15.02046 -14.72830 -14.61596 -14.33627 -14.06083 -13.49904 -13.39320 -13.25966 -13.14809 -13.02629 -12.87363 -12.72603 -12.68793 -12.43467 -12.31653 -12.03793 -11.92267 -11.76246 -11.73005 -11.49351 -11.05427 -10.98009 -10.88865 -10.14318 -10.10571 -9.30080 -8.92027 -8.03178 -5.34105 -0.79819 0.03044 0.26203 0.56367 0.61405 1.32021 1.38827 1.43234 1.95414 2.10161 2.46850 2.63717 3.21279 3.29661 3.54904 3.61193 3.76571 3.89780 4.03177 4.05457 4.29243 4.30476 4.38177 4.46617 4.50211 4.61333 4.72211 4.77312 4.78966 4.84713 4.94229 4.95830 5.03381 5.10840 5.16530 5.28217 5.32115 5.33522 5.43735 5.52670 5.55810 5.76639 5.82368 6.21336 6.43225 7.07699 7.09177 7.86338 8.04050 9.19252 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.003913 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.228587 B = 7154.764621 C = 8008.173155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.121 4.121 5 C 0.139 3.861 6 H 0.057 0.943 7 C -0.151 4.151 8 N -0.688 5.688 9 C 0.581 3.419 10 O -0.560 6.560 11 C 0.065 3.935 12 N -0.505 5.505 13 S 0.441 5.559 14 C -0.214 4.214 15 C -0.071 4.071 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.075 4.075 19 C -0.117 4.117 20 N -0.747 5.747 21 C -0.217 4.217 22 H 0.048 0.952 23 C -0.066 4.066 24 N -0.987 5.987 25 Si 0.950 3.050 26 H -0.289 1.289 27 H -0.295 1.295 28 H -0.244 1.244 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.363 0.637 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 9.560 -20.439 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.052 0.948 4 C -0.159 4.159 5 C 0.035 3.965 6 H 0.075 0.925 7 C -0.209 4.209 8 N -0.339 5.339 9 C 0.363 3.637 10 O -0.438 6.438 11 C -0.122 4.122 12 N -0.333 5.333 13 S 0.601 5.399 14 C -0.335 4.335 15 C -0.093 4.093 16 C -0.103 4.103 17 C -0.132 4.132 18 C -0.097 4.097 19 C -0.127 4.127 20 N -0.391 5.391 21 C -0.349 4.349 22 H 0.066 0.934 23 C -0.257 4.257 24 N -0.639 5.639 25 Si 0.778 3.222 26 H -0.216 1.216 27 H -0.222 1.222 28 H -0.169 1.169 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.189 0.811 39 H 0.195 0.805 40 H 0.174 0.826 41 H 0.139 0.861 42 H 0.197 0.803 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.581 10.334 -20.977 24.909 hybrid contribution 0.973 -2.035 1.587 2.758 sum 9.555 8.298 -19.390 23.155 Atomic orbital electron populations 1.22270 0.97053 1.01563 1.00683 1.20477 0.93023 0.95051 0.85555 0.94829 1.22152 0.92441 1.03070 0.98240 1.21094 0.96047 0.80146 0.99217 0.92483 1.22099 1.00592 1.00552 0.97695 1.45781 1.15404 1.12137 1.60591 1.17459 0.82800 0.85364 0.78114 1.90744 1.52478 1.55648 1.44915 1.21828 0.91989 0.94814 1.03533 1.71129 1.34166 1.07417 1.20599 1.80907 0.99235 1.06771 1.52985 1.24574 1.04146 0.96963 1.07840 1.20481 0.89630 1.01121 0.98054 1.21577 0.99460 0.94015 0.95212 1.21299 0.97616 0.95335 0.98925 1.20870 0.91734 1.00892 0.96232 1.19769 0.94517 0.94002 1.04410 1.42778 1.79970 1.09325 1.07039 1.18927 1.34435 0.93898 0.87605 0.93427 1.25442 1.02586 1.02428 0.95262 1.69888 1.55159 1.37623 1.01209 0.85474 0.78255 0.81248 0.77244 1.21556 1.22156 1.16857 0.92577 0.95614 0.90522 0.87469 0.88719 0.94082 0.89922 0.90264 0.75105 0.81059 0.80494 0.82552 0.86079 0.80327 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.49 71.98 0.68 -4.46 16 2 C 0.17 6.18 2.84 44.99 0.13 6.30 16 3 H 0.03 1.39 7.56 -2.39 -0.02 1.37 16 4 C -0.12 -3.26 4.29 30.60 0.13 -3.13 16 5 C 0.14 4.35 2.52 44.99 0.11 4.46 16 6 H 0.06 2.33 7.05 -2.39 -0.02 2.31 16 7 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 8 N -0.69 -22.30 4.44 -445.84 -1.98 -24.28 16 9 C 0.58 22.10 7.77 86.65 0.67 22.77 16 10 O -0.56 -24.80 14.67 -4.07 -0.06 -24.86 16 11 C 0.07 2.22 6.82 43.85 0.30 2.52 16 12 N -0.51 -14.77 10.49 -64.54 -0.68 -15.45 16 13 S 0.44 9.59 23.36 -56.49 -1.32 8.27 16 14 C -0.21 -5.07 6.73 22.98 0.15 -4.92 16 15 C -0.07 -1.15 10.03 22.04 0.22 -0.93 16 16 C -0.08 -1.17 10.00 22.10 0.22 -0.94 16 17 C -0.11 -2.28 9.93 21.99 0.22 -2.06 16 18 C -0.07 -2.21 9.57 22.36 0.21 -1.99 16 19 C -0.12 -3.64 6.10 -20.17 -0.12 -3.76 16 20 N -0.75 -35.62 4.30 -322.93 -1.39 -37.00 16 21 C -0.22 -12.97 10.41 84.03 0.87 -12.09 16 22 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 24 N -0.99 -66.55 13.97 21.65 0.30 -66.25 16 25 Si 0.95 48.32 27.74 68.60 1.90 50.23 16 26 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 27 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 28 H -0.24 -10.96 6.52 99.48 0.65 -10.31 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 11.63 8.04 -92.71 -0.75 10.88 16 38 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.12 4.12 6.64 -2.91 -0.02 4.10 16 42 H 0.36 16.72 5.66 -92.71 -0.52 16.19 16 43 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -82.79 371.81 1.46 -81.33 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.28 Total: 32.93 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 4.96 Total: -4.92 kcal Atomic # 7 Polarization: -139.24 SS G_CDS: -3.74 Total: -142.98 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.90 Total: 50.23 kcal Atomic # 16 Polarization: 9.59 SS G_CDS: -1.32 Total: 8.27 kcal Total: -82.79 1.46 -81.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.011 kcal (2) G-P(sol) polarization free energy of solvation -82.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds