Wall clock time and date at job start Tue Mar 31 2020 18:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47270 * 2 1 4 4 C 1.53001 * 109.47029 * 240.00417 * 2 1 3 5 5 C 1.53001 * 109.47204 * 174.99839 * 4 2 1 6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2 7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2 8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2 9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4 10 10 O 1.21613 * 120.00251 * 359.72091 * 9 8 5 11 11 C 1.47380 * 119.99615 * 179.72401 * 9 8 5 12 12 N 1.29688 * 121.83326 * 359.71335 * 11 9 8 13 13 S 1.55995 * 111.74373 * 179.87244 * 12 11 9 14 14 C 1.76252 * 97.56285 * 0.33603 * 13 12 11 15 15 C 1.38697 * 134.18137 * 179.79100 * 14 13 12 16 16 C 1.36803 * 119.62438 * 180.02562 * 15 14 13 17 17 C 1.38904 * 120.30891 * 0.02562 * 16 15 14 18 18 C 1.36332 * 121.03525 * 359.96044 * 17 16 15 19 19 C 1.40407 * 119.96016 * 0.04324 * 18 17 16 20 20 N 1.46500 * 109.47524 * 120.00137 * 2 1 3 21 21 C 1.36944 * 120.00044 * 275.00163 * 20 2 1 22 22 H 1.08006 * 119.99457 * 359.97438 * 21 20 2 23 23 C 1.38803 * 119.99791 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00397 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47352 * 59.99504 * 25 23 21 27 27 H 1.48501 * 109.47231 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46938 * 299.99440 * 25 23 21 29 29 H 1.09002 * 109.46832 * 299.99696 * 1 2 3 30 30 H 1.08999 * 109.47542 * 59.99691 * 1 2 3 31 31 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47061 * 54.99506 * 4 2 1 33 33 H 1.08994 * 109.46820 * 294.99619 * 4 2 1 34 34 H 1.08999 * 109.47091 * 299.99643 * 7 5 4 35 35 H 1.08996 * 109.47098 * 60.00014 * 7 5 4 36 36 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99790 * 24.99549 * 8 5 4 38 38 H 1.07996 * 120.18979 * 359.97438 * 15 14 13 39 39 H 1.08004 * 119.84658 * 180.02562 * 16 15 14 40 40 H 1.08002 * 119.48352 * 180.02562 * 17 16 15 41 41 H 1.08004 * 120.01783 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99715 * 94.99572 * 20 2 1 43 43 H 0.96998 * 120.00245 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3724 -0.9873 0.2766 10 8 5.9854 -0.0792 -0.2513 11 6 5.9623 -1.7085 1.4185 12 7 5.3379 -2.6784 2.0113 13 16 6.1767 -3.2746 3.1836 14 6 7.5774 -2.2162 3.0284 15 6 8.7787 -2.0962 3.7112 16 6 9.6811 -1.1416 3.3294 17 6 9.3983 -0.2956 2.2646 18 6 8.2240 -0.3964 1.5795 19 6 7.2781 -1.3663 1.9481 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6125 -0.6618 3.5089 24 7 2.9256 -1.9388 3.4498 25 14 2.7903 0.2699 5.1182 26 1 1.4675 0.8056 5.5288 27 1 3.2995 -0.6485 6.1682 28 1 3.7447 1.3931 4.9371 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7517 -1.7714 -1.2056 34 1 3.7722 -2.2739 -2.6702 35 1 3.6262 -0.6884 -3.4658 36 1 5.1507 -1.1475 -2.6704 37 1 3.6648 -2.0584 0.2385 38 1 9.0001 -2.7521 4.5401 39 1 10.6178 -1.0452 3.8583 40 1 10.1206 0.4531 1.9742 41 1 8.0212 0.2698 0.7539 42 1 2.2491 -1.6318 1.1525 43 1 3.2490 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134418169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:18 Heat of formation + Delta-G solvation = 34.397317 kcal Electronic energy + Delta-G solvation = -27322.344941 eV Core-core repulsion = 23687.447136 eV Total energy + Delta-G solvation = -3634.897805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.09518 -38.79554 -36.84352 -36.23026 -34.13378 -32.19288 -30.85670 -30.69699 -30.05457 -28.47019 -26.33720 -25.49166 -23.58943 -22.84493 -22.28587 -20.65149 -20.19881 -19.44506 -18.24695 -17.11283 -16.97759 -16.15080 -15.55898 -14.96374 -14.85709 -14.76559 -14.43646 -13.86328 -13.81065 -13.69012 -13.53930 -13.19406 -12.84336 -12.63712 -12.12697 -11.94331 -11.88683 -11.81851 -11.70043 -11.63111 -11.45667 -10.97277 -10.81705 -10.69905 -10.53773 -10.34957 -10.25654 -10.23503 -9.87006 -9.61361 -9.47401 -9.26723 -8.90255 -8.73408 -8.36444 -7.43785 -6.86426 -5.69050 -2.95979 0.87201 1.36030 1.80026 2.09321 2.38153 3.44229 3.47924 3.51101 3.61401 3.76375 4.10218 4.62673 4.73040 4.95412 5.07251 5.12814 5.36844 5.44415 5.52731 5.57254 5.62016 5.70572 5.71340 5.74454 5.91801 6.00439 6.04334 6.15763 6.17307 6.27403 6.31135 6.37647 6.39767 6.44063 6.57713 6.59887 6.64392 6.82661 6.88893 7.04311 7.08936 7.19551 7.75661 8.22055 8.45733 8.85055 9.57773 10.12748 10.48220 11.49543 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.005834 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.987055 B = 4798.687910 C = 6334.423586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.085 0.915 7 C -0.162 4.162 8 N -0.677 5.677 9 C 0.605 3.395 10 O -0.555 6.555 11 C 0.074 3.926 12 N -0.408 5.408 13 S 0.390 5.610 14 C -0.216 4.216 15 C -0.074 4.074 16 C -0.104 4.104 17 C -0.128 4.128 18 C -0.046 4.046 19 C -0.079 4.079 20 N -0.715 5.715 21 C -0.233 4.233 22 H 0.063 0.937 23 C -0.005 4.005 24 N -0.909 5.909 25 Si 0.888 3.112 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.380 0.620 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -2.639 -5.828 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.103 0.897 7 C -0.220 4.220 8 N -0.329 5.329 9 C 0.387 3.613 10 O -0.434 6.434 11 C -0.113 4.113 12 N -0.233 5.233 13 S 0.549 5.451 14 C -0.337 4.337 15 C -0.096 4.096 16 C -0.127 4.127 17 C -0.148 4.148 18 C -0.068 4.068 19 C -0.090 4.090 20 N -0.359 5.359 21 C -0.364 4.364 22 H 0.081 0.919 23 C -0.201 4.201 24 N -0.557 5.557 25 Si 0.720 3.280 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.215 0.785 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.088 -3.570 -5.330 10.323 hybrid contribution 0.625 1.426 0.712 1.712 sum 8.713 -2.144 -4.618 10.091 Atomic orbital electron populations 1.22420 0.99388 1.00660 0.99828 1.20277 0.91690 0.95674 0.86463 0.93537 1.22213 0.93823 1.01699 0.99483 1.20867 0.92656 0.97298 0.84783 0.89719 1.22206 1.01801 1.00889 0.97148 1.45824 1.17166 1.37091 1.32802 1.16939 0.81493 0.82039 0.80847 1.90672 1.62409 1.30797 1.59497 1.21698 0.92058 0.97413 1.00126 1.71584 1.28486 1.13600 1.09671 1.81381 0.98992 1.33145 1.31620 1.24502 1.02754 1.05006 1.01455 1.19851 0.91393 0.99183 0.99180 1.20923 0.99159 0.95336 0.97253 1.20789 0.97301 1.00076 0.96637 1.20774 0.91376 0.95512 0.99110 1.19678 0.94373 0.98654 0.96289 1.42448 1.77866 1.10254 1.05284 1.19043 1.36522 0.93587 0.87293 0.91859 1.24566 1.02411 0.95969 0.97201 1.69649 1.50189 1.07822 1.28071 0.86562 0.77688 0.78998 0.84768 1.21532 1.21750 1.21672 0.92932 0.94660 0.93656 0.90732 0.91737 0.92775 0.92014 0.92337 0.74763 0.85477 0.85526 0.85593 0.83936 0.78502 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 2 C 0.17 3.21 2.89 -67.93 -0.20 3.01 16 3 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16 4 C -0.13 -2.05 4.43 -26.73 -0.12 -2.17 16 5 C 0.15 2.45 2.58 -67.93 -0.17 2.28 16 6 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 7 C -0.16 -2.21 9.49 37.16 0.35 -1.86 16 8 N -0.68 -12.95 3.79 -54.90 -0.21 -13.16 16 9 C 0.61 12.71 7.77 -12.54 -0.10 12.61 16 10 O -0.56 -12.12 14.67 5.27 0.08 -12.05 16 11 C 0.07 1.54 6.82 -81.98 -0.56 0.98 16 12 N -0.41 -8.42 9.54 28.24 0.27 -8.15 16 13 S 0.39 6.89 23.36 -107.50 -2.51 4.38 16 14 C -0.22 -3.69 6.73 -38.49 -0.26 -3.95 16 15 C -0.07 -1.02 10.03 -39.93 -0.40 -1.42 16 16 C -0.10 -1.27 10.00 -39.85 -0.40 -1.67 16 17 C -0.13 -1.71 9.93 -40.02 -0.40 -2.11 16 18 C -0.05 -0.77 9.57 -39.45 -0.38 -1.14 16 19 C -0.08 -1.49 6.10 -105.09 -0.64 -2.13 16 20 N -0.71 -16.55 3.84 -53.42 -0.21 -16.75 16 21 C -0.23 -6.20 9.93 -15.06 -0.15 -6.35 16 22 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 24 N -0.91 -24.57 12.10 55.49 0.67 -23.90 16 25 Si 0.89 22.45 29.55 -169.99 -5.02 17.42 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 8.32 5.95 -40.82 -0.24 8.08 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.14 2.44 6.64 -52.48 -0.35 2.09 16 42 H 0.38 9.13 5.70 -40.82 -0.23 8.90 16 43 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -29.74 368.83 -10.37 -40.11 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.83 Total: 13.19 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.16 Total: -6.64 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.53 Total: -61.97 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -2.51 Total: 4.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.74 -10.37 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.502 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds