Wall clock time and date at job start Tue Mar 31 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47270 * 2 1 4 4 C 1.53001 * 109.47029 * 240.00417 * 2 1 3 5 5 C 1.53001 * 109.47204 * 174.99839 * 4 2 1 6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2 7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2 8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2 9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4 10 10 O 1.21613 * 120.00251 * 359.72091 * 9 8 5 11 11 C 1.47380 * 119.99615 * 179.72401 * 9 8 5 12 12 N 1.29688 * 121.83326 * 359.71335 * 11 9 8 13 13 S 1.55995 * 111.74373 * 179.87244 * 12 11 9 14 14 C 1.76252 * 97.56285 * 0.33603 * 13 12 11 15 15 C 1.38697 * 134.18137 * 179.79100 * 14 13 12 16 16 C 1.36803 * 119.62438 * 180.02562 * 15 14 13 17 17 C 1.38904 * 120.30891 * 0.02562 * 16 15 14 18 18 C 1.36332 * 121.03525 * 359.96044 * 17 16 15 19 19 C 1.40407 * 119.96016 * 0.04324 * 18 17 16 20 20 N 1.46500 * 109.47524 * 120.00137 * 2 1 3 21 21 C 1.36944 * 120.00044 * 275.00163 * 20 2 1 22 22 H 1.08006 * 119.99457 * 359.97438 * 21 20 2 23 23 C 1.38803 * 119.99791 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00397 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47352 * 59.99504 * 25 23 21 27 27 H 1.48501 * 109.47231 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46938 * 299.99440 * 25 23 21 29 29 H 1.09002 * 109.46832 * 299.99696 * 1 2 3 30 30 H 1.08999 * 109.47542 * 59.99691 * 1 2 3 31 31 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47061 * 54.99506 * 4 2 1 33 33 H 1.08994 * 109.46820 * 294.99619 * 4 2 1 34 34 H 1.08999 * 109.47091 * 299.99643 * 7 5 4 35 35 H 1.08996 * 109.47098 * 60.00014 * 7 5 4 36 36 H 1.09001 * 109.46823 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99790 * 24.99549 * 8 5 4 38 38 H 1.07996 * 120.18979 * 359.97438 * 15 14 13 39 39 H 1.08004 * 119.84658 * 180.02562 * 16 15 14 40 40 H 1.08002 * 119.48352 * 180.02562 * 17 16 15 41 41 H 1.08004 * 120.01783 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99715 * 94.99572 * 20 2 1 43 43 H 0.96998 * 120.00245 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0644 -1.2248 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3724 -0.9873 0.2766 10 8 5.9854 -0.0792 -0.2513 11 6 5.9623 -1.7085 1.4185 12 7 5.3379 -2.6784 2.0113 13 16 6.1767 -3.2746 3.1836 14 6 7.5774 -2.2162 3.0284 15 6 8.7787 -2.0962 3.7112 16 6 9.6811 -1.1416 3.3294 17 6 9.3983 -0.2956 2.2646 18 6 8.2240 -0.3964 1.5795 19 6 7.2781 -1.3663 1.9481 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6125 -0.6618 3.5089 24 7 2.9256 -1.9388 3.4498 25 14 2.7903 0.2699 5.1182 26 1 1.4675 0.8056 5.5288 27 1 3.2995 -0.6485 6.1682 28 1 3.7447 1.3931 4.9371 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7517 -1.7714 -1.2056 34 1 3.7722 -2.2739 -2.6702 35 1 3.6262 -0.6884 -3.4658 36 1 5.1507 -1.1475 -2.6704 37 1 3.6648 -2.0584 0.2385 38 1 9.0001 -2.7521 4.5401 39 1 10.6178 -1.0452 3.8583 40 1 10.1206 0.4531 1.9742 41 1 8.0212 0.2698 0.7539 42 1 2.2491 -1.6318 1.1525 43 1 3.2490 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134418169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:17 Heat of formation + Delta-G solvation = 17.384771 kcal Electronic energy + Delta-G solvation = -27323.082661 eV Core-core repulsion = 23687.447136 eV Total energy + Delta-G solvation = -3635.635524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47895 -40.15749 -38.31194 -37.64566 -35.78226 -33.98726 -32.16126 -32.00338 -31.35142 -30.19832 -27.63631 -26.90617 -25.53795 -24.03370 -23.51481 -22.02269 -21.69845 -20.97438 -19.55865 -19.06085 -18.38656 -17.46676 -16.95308 -16.58911 -16.35180 -16.08761 -15.72888 -15.57019 -15.43164 -15.11515 -14.89046 -14.58871 -14.30160 -14.14436 -13.59157 -13.33770 -13.24793 -13.11572 -13.00228 -12.91966 -12.80681 -12.65216 -12.57828 -12.30315 -12.19418 -11.98611 -11.72458 -11.57941 -11.55517 -11.41401 -10.87206 -10.78040 -10.71929 -9.95121 -9.88628 -8.77991 -8.74803 -7.76667 -5.00855 -0.44205 0.16823 0.50730 0.74849 0.97429 1.38761 1.40926 1.43999 2.17627 2.40504 2.58091 2.77971 3.45251 3.51879 3.71005 3.83534 4.01861 4.09986 4.16144 4.19503 4.37065 4.41053 4.51390 4.55389 4.60986 4.68534 4.82693 4.85888 4.90256 5.03140 5.05762 5.07122 5.12032 5.14224 5.28158 5.35318 5.40434 5.45667 5.52847 5.60495 5.63074 5.75776 5.93394 6.39882 6.66046 7.28974 7.49128 8.22792 8.48876 9.39816 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.005834 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.987055 B = 4798.687910 C = 6334.423586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.028 0.972 4 C -0.119 4.119 5 C 0.143 3.857 6 H 0.062 0.938 7 C -0.150 4.150 8 N -0.673 5.673 9 C 0.593 3.407 10 O -0.576 6.576 11 C 0.049 3.951 12 N -0.438 5.438 13 S 0.401 5.599 14 C -0.226 4.226 15 C -0.077 4.077 16 C -0.088 4.088 17 C -0.114 4.114 18 C -0.073 4.073 19 C -0.112 4.112 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.050 0.950 23 C -0.043 4.043 24 N -0.912 5.912 25 Si 0.927 3.073 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.301 1.301 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.408 0.592 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.162 0.838 41 H 0.127 0.873 42 H 0.374 0.626 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.488 -2.726 -6.064 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.039 3.961 6 H 0.081 0.919 7 C -0.209 4.209 8 N -0.324 5.324 9 C 0.376 3.624 10 O -0.457 6.457 11 C -0.137 4.137 12 N -0.264 5.264 13 S 0.559 5.441 14 C -0.347 4.347 15 C -0.098 4.098 16 C -0.110 4.110 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.123 4.123 20 N -0.362 5.362 21 C -0.370 4.370 22 H 0.068 0.932 23 C -0.239 4.239 24 N -0.561 5.561 25 Si 0.759 3.241 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.229 1.229 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.246 0.754 38 H 0.178 0.822 39 H 0.193 0.807 40 H 0.179 0.821 41 H 0.145 0.855 42 H 0.209 0.791 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.395 -3.651 -5.596 11.529 hybrid contribution 0.318 1.516 0.794 1.741 sum 9.713 -2.135 -4.802 11.043 Atomic orbital electron populations 1.22259 0.97688 1.00864 1.00369 1.20496 0.92776 0.94848 0.86595 0.95342 1.22134 0.92745 1.01959 0.98930 1.21068 0.93505 0.96115 0.85384 0.91949 1.22102 1.00785 1.01729 0.96245 1.45930 1.16570 1.36740 1.33172 1.17230 0.81999 0.82057 0.81157 1.90630 1.63026 1.31707 1.60302 1.21921 0.93268 0.97975 1.00578 1.71401 1.29978 1.14111 1.10930 1.81015 0.99450 1.32994 1.30602 1.24703 1.03649 1.04603 1.01701 1.20407 0.90054 0.99907 0.99464 1.21492 1.00225 0.93246 0.96085 1.21254 0.96159 1.00239 0.95707 1.20849 0.92831 0.95759 1.00088 1.19896 0.94378 1.00378 0.97666 1.42487 1.78176 1.09942 1.05627 1.19110 1.35979 0.93168 0.88737 0.93178 1.24979 1.03350 0.96771 0.98796 1.69733 1.50639 1.07947 1.27788 0.85951 0.77175 0.77823 0.83123 1.21362 1.21788 1.22910 0.95379 0.91107 0.93539 0.86877 0.90954 0.91683 0.89020 0.94010 0.75397 0.82162 0.80695 0.82087 0.85496 0.79102 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.49 71.98 0.68 -4.45 16 2 C 0.16 6.09 2.89 44.99 0.13 6.22 16 3 H 0.03 1.18 8.08 -2.38 -0.02 1.16 16 4 C -0.12 -3.48 4.43 30.60 0.14 -3.34 16 5 C 0.14 4.71 2.58 44.99 0.12 4.83 16 6 H 0.06 2.33 7.57 -2.39 -0.02 2.32 16 7 C -0.15 -3.92 9.49 71.98 0.68 -3.23 16 8 N -0.67 -26.70 3.79 -445.84 -1.69 -28.39 16 9 C 0.59 26.25 7.77 86.65 0.67 26.92 16 10 O -0.58 -26.59 14.67 -4.07 -0.06 -26.65 16 11 C 0.05 2.16 6.82 43.86 0.30 2.46 16 12 N -0.44 -18.85 9.54 -64.56 -0.62 -19.47 16 13 S 0.40 14.43 23.36 -56.49 -1.32 13.11 16 14 C -0.23 -7.60 6.73 22.97 0.15 -7.44 16 15 C -0.08 -1.88 10.03 22.04 0.22 -1.66 16 16 C -0.09 -1.78 10.00 22.09 0.22 -1.56 16 17 C -0.11 -2.75 9.93 21.98 0.22 -2.53 16 18 C -0.07 -2.46 9.57 22.35 0.21 -2.25 16 19 C -0.11 -4.38 6.10 -20.17 -0.12 -4.50 16 20 N -0.72 -33.96 3.84 -322.93 -1.24 -35.20 16 21 C -0.24 -12.98 9.93 84.03 0.83 -12.15 16 22 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 23 C -0.04 -2.40 5.50 84.86 0.47 -1.94 16 24 N -0.91 -50.40 12.10 21.65 0.26 -50.14 16 25 Si 0.93 46.94 29.55 68.60 2.03 48.97 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.41 17.03 5.95 -92.71 -0.55 16.48 16 38 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.13 4.56 6.64 -2.91 -0.02 4.54 16 42 H 0.37 18.41 5.70 -92.71 -0.53 17.88 16 43 H 0.24 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -68.40 368.83 2.25 -66.15 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.04 Total: 36.25 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.93 Total: -4.62 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -3.29 Total: -133.20 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.65 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 14.43 SS G_CDS: -1.32 Total: 13.11 kcal Total: -68.40 2.25 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.531 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds