Wall clock time and date at job start Tue Mar 31 2020 18:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 H 1.09000 * 109.47046 * 305.00930 * 5 4 2 7 7 C 1.52999 * 109.47319 * 184.99952 * 5 4 2 8 8 N 1.46505 * 109.47061 * 65.00264 * 5 4 2 9 9 C 1.34774 * 119.99995 * 205.00211 * 8 5 4 10 10 O 1.21608 * 120.00153 * 0.02562 * 9 8 5 11 11 C 1.47383 * 119.99653 * 179.97438 * 9 8 5 12 12 N 1.29684 * 121.83149 * 0.02562 * 11 9 8 13 13 S 1.55998 * 111.74362 * 179.97438 * 12 11 9 14 14 C 1.76257 * 97.56347 * 0.02562 * 13 12 11 15 15 C 1.38698 * 134.19091 * 180.02562 * 14 13 12 16 16 C 1.36798 * 119.62950 * 179.97438 * 15 14 13 17 17 C 1.38907 * 120.31046 * 0.02562 * 16 15 14 18 18 C 1.36333 * 121.03336 * 359.97438 * 17 16 15 19 19 C 1.40422 * 119.96244 * 359.72902 * 18 17 16 20 20 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 21 21 C 1.36936 * 119.99928 * 85.00237 * 20 2 1 22 22 H 1.07993 * 120.00240 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99737 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00292 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99784 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47150 * 90.00137 * 25 23 21 27 27 H 1.48496 * 109.46965 * 210.00072 * 25 23 21 28 28 H 1.48499 * 109.47144 * 330.00096 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.09006 * 109.46813 * 60.00451 * 7 5 4 35 35 H 1.09000 * 109.47028 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47444 * 300.00344 * 7 5 4 37 37 H 0.97004 * 119.99767 * 24.99603 * 8 5 4 38 38 H 1.07997 * 120.18312 * 359.94579 * 15 14 13 39 39 H 1.07999 * 119.84915 * 179.97438 * 16 15 14 40 40 H 1.07999 * 119.48456 * 179.97438 * 17 16 15 41 41 H 1.08000 * 120.02033 * 180.02562 * 18 17 16 42 42 H 0.97003 * 119.99991 * 264.99646 * 20 2 1 43 43 H 0.97001 * 120.00319 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4383 2.4926 8 7 3.9480 0.7893 1.4926 9 6 5.1612 1.2134 1.0868 10 8 5.9377 0.4319 0.5719 11 6 5.5465 2.6247 1.2662 12 7 4.7464 3.4882 1.8103 13 16 5.3908 4.9070 1.8835 14 6 6.9347 4.4994 1.1372 15 6 8.0805 5.2186 0.8312 16 6 9.1370 4.5862 0.2353 17 6 9.0654 3.2315 -0.0633 18 6 7.9490 2.5055 0.2287 19 6 6.8508 3.1256 0.8460 20 7 2.0184 -0.6906 -1.1961 21 6 2.1492 -0.0075 -2.3757 22 1 1.8928 1.0404 -2.4241 23 6 2.6124 -0.6618 -3.5089 24 7 2.9253 -1.9388 -3.4498 25 14 2.7915 0.2702 -5.1179 26 1 4.1538 0.8552 -5.2021 27 1 2.5815 -0.6610 -6.2554 28 1 1.7815 1.3574 -5.1753 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.8000 -2.4820 2.3596 35 1 5.1713 -1.3611 2.5388 36 1 3.6545 -1.0594 3.4195 37 1 3.3285 1.4128 1.9029 38 1 8.1379 6.2721 1.0617 39 1 10.0308 5.1429 -0.0049 40 1 9.9073 2.7458 -0.5342 41 1 7.9112 1.4529 -0.0103 42 1 2.2491 -1.6318 -1.1525 43 1 3.2486 -2.3962 -4.2418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134418170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:22 Heat of formation + Delta-G solvation = 23.419509 kcal Electronic energy + Delta-G solvation = -26220.837038 eV Core-core repulsion = 22585.463199 eV Total energy + Delta-G solvation = -3635.373838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.60786 -39.11545 -37.12991 -36.60725 -34.45118 -32.13605 -31.26391 -30.97175 -30.42294 -28.55955 -26.36407 -25.99460 -23.59011 -23.28075 -22.66872 -20.96381 -20.21671 -19.67041 -18.78496 -17.63605 -17.05608 -16.54470 -15.73147 -15.43640 -15.37420 -14.88685 -14.68973 -14.19477 -14.06817 -13.85429 -13.74757 -13.49084 -12.96310 -12.68953 -12.44472 -12.30419 -12.11587 -11.97329 -11.89526 -11.70153 -11.56294 -11.31254 -11.01622 -10.84305 -10.79152 -10.58255 -10.39688 -10.18738 -9.95627 -9.85945 -9.69225 -9.57292 -9.23642 -8.83761 -8.74061 -8.01195 -6.87593 -5.68899 -2.96473 0.23173 0.93596 1.17502 1.56277 1.64390 3.20503 3.31137 3.48177 3.53220 3.54139 3.60413 4.20657 4.51399 4.66073 4.74338 4.96248 5.07597 5.16768 5.26881 5.30827 5.43019 5.53045 5.65464 5.71312 5.73455 5.83376 5.92081 5.96351 5.97156 6.05740 6.17323 6.19642 6.30464 6.33748 6.37805 6.47214 6.60425 6.63198 6.72567 6.83703 6.95627 7.12048 7.76407 7.77058 8.41873 8.49707 9.61062 10.18309 10.53032 11.53883 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.004072 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.450263 B = 6874.292366 C = 8062.490475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.142 3.858 6 H 0.109 0.891 7 C -0.161 4.161 8 N -0.694 5.694 9 C 0.589 3.411 10 O -0.518 6.518 11 C 0.101 3.899 12 N -0.490 5.490 13 S 0.374 5.626 14 C -0.199 4.199 15 C -0.078 4.078 16 C -0.089 4.089 17 C -0.121 4.121 18 C -0.037 4.037 19 C -0.088 4.088 20 N -0.720 5.720 21 C -0.233 4.233 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.402 0.598 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 12.857 14.848 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.127 0.873 7 C -0.219 4.219 8 N -0.345 5.345 9 C 0.369 3.631 10 O -0.392 6.392 11 C -0.087 4.087 12 N -0.315 5.315 13 S 0.533 5.467 14 C -0.319 4.319 15 C -0.100 4.100 16 C -0.112 4.112 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.098 4.098 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.237 0.763 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.918 13.559 15.344 21.954 hybrid contribution 0.905 -0.591 -1.605 1.935 sum 8.823 12.968 13.739 20.851 Atomic orbital electron populations 1.22446 0.99479 1.00777 0.99781 1.20230 0.91626 0.95575 0.86517 0.93650 1.22170 0.93513 1.02308 0.98943 1.21138 0.95387 0.79492 1.00107 0.87331 1.22185 1.01551 1.00223 0.97954 1.45820 1.15662 1.12001 1.60998 1.17040 0.82823 0.84398 0.78876 1.90797 1.51251 1.54228 1.42918 1.22066 0.90538 0.95495 1.00634 1.71434 1.33321 1.05952 1.20803 1.81304 1.00532 1.09565 1.55297 1.24261 1.02781 0.97704 1.07201 1.19899 0.90905 0.99471 0.99707 1.21067 0.98227 0.94891 0.97004 1.20934 0.98357 0.94311 1.00520 1.20915 0.90065 1.01553 0.93373 1.19622 0.94614 0.92410 1.03178 1.42390 1.77996 1.10535 1.05264 1.19154 1.36284 0.93625 0.87365 0.91610 1.24668 1.02264 0.95916 0.97854 1.69642 1.51051 1.08553 1.28741 0.86284 0.77777 0.78659 0.84080 1.21810 1.21795 1.20933 0.92925 0.93501 0.94713 0.91971 0.90400 0.91489 0.92445 0.93073 0.76268 0.84952 0.84874 0.84850 0.83228 0.78324 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.49 37.16 0.35 -2.63 16 2 C 0.17 3.36 2.84 -67.93 -0.19 3.17 16 3 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 4 C -0.13 -2.07 4.29 -26.73 -0.11 -2.18 16 5 C 0.14 2.38 2.52 -67.93 -0.17 2.21 16 6 H 0.11 2.32 7.05 -51.93 -0.37 1.95 16 7 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 8 N -0.69 -11.32 4.44 -54.89 -0.24 -11.57 16 9 C 0.59 10.63 7.77 -12.54 -0.10 10.54 16 10 O -0.52 -10.72 14.67 5.27 0.08 -10.65 16 11 C 0.10 1.63 6.82 -81.99 -0.56 1.07 16 12 N -0.49 -7.06 10.49 28.24 0.30 -6.77 16 13 S 0.37 4.25 23.36 -107.50 -2.51 1.74 16 14 C -0.20 -2.43 6.73 -38.49 -0.26 -2.69 16 15 C -0.08 -0.74 10.03 -39.93 -0.40 -1.14 16 16 C -0.09 -0.78 10.00 -39.85 -0.40 -1.18 16 17 C -0.12 -1.27 9.93 -40.02 -0.40 -1.67 16 18 C -0.04 -0.51 9.57 -39.45 -0.38 -0.89 16 19 C -0.09 -1.30 6.10 -105.09 -0.64 -1.94 16 20 N -0.72 -17.99 4.49 -53.43 -0.24 -18.23 16 21 C -0.23 -6.60 9.93 -15.06 -0.15 -6.75 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 25 Si 0.90 23.23 29.55 -169.99 -5.02 18.21 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 5.87 8.04 -40.82 -0.33 5.54 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.15 2.24 6.64 -52.49 -0.35 1.89 16 42 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -33.24 374.93 -10.37 -43.61 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.95 Total: 12.30 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.15 Total: -6.39 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.54 Total: -64.47 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -2.51 Total: 1.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.24 -10.37 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.033 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds