Wall clock time and date at job start Tue Mar 31 2020 18:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 H 1.09000 * 109.47046 * 305.00930 * 5 4 2 7 7 C 1.52999 * 109.47319 * 184.99952 * 5 4 2 8 8 N 1.46505 * 109.47061 * 65.00264 * 5 4 2 9 9 C 1.34774 * 119.99995 * 205.00211 * 8 5 4 10 10 O 1.21608 * 120.00153 * 0.02562 * 9 8 5 11 11 C 1.47383 * 119.99653 * 179.97438 * 9 8 5 12 12 N 1.29684 * 121.83149 * 0.02562 * 11 9 8 13 13 S 1.55998 * 111.74362 * 179.97438 * 12 11 9 14 14 C 1.76257 * 97.56347 * 0.02562 * 13 12 11 15 15 C 1.38698 * 134.19091 * 180.02562 * 14 13 12 16 16 C 1.36798 * 119.62950 * 179.97438 * 15 14 13 17 17 C 1.38907 * 120.31046 * 0.02562 * 16 15 14 18 18 C 1.36333 * 121.03336 * 359.97438 * 17 16 15 19 19 C 1.40422 * 119.96244 * 359.72902 * 18 17 16 20 20 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 21 21 C 1.36936 * 119.99928 * 85.00237 * 20 2 1 22 22 H 1.07993 * 120.00240 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99737 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00292 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99784 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47150 * 90.00137 * 25 23 21 27 27 H 1.48496 * 109.46965 * 210.00072 * 25 23 21 28 28 H 1.48499 * 109.47144 * 330.00096 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.09006 * 109.46813 * 60.00451 * 7 5 4 35 35 H 1.09000 * 109.47028 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47444 * 300.00344 * 7 5 4 37 37 H 0.97004 * 119.99767 * 24.99603 * 8 5 4 38 38 H 1.07997 * 120.18312 * 359.94579 * 15 14 13 39 39 H 1.07999 * 119.84915 * 179.97438 * 16 15 14 40 40 H 1.07999 * 119.48456 * 179.97438 * 17 16 15 41 41 H 1.08000 * 120.02033 * 180.02562 * 18 17 16 42 42 H 0.97003 * 119.99991 * 264.99646 * 20 2 1 43 43 H 0.97001 * 120.00319 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4383 2.4926 8 7 3.9480 0.7893 1.4926 9 6 5.1612 1.2134 1.0868 10 8 5.9377 0.4319 0.5719 11 6 5.5465 2.6247 1.2662 12 7 4.7464 3.4882 1.8103 13 16 5.3908 4.9070 1.8835 14 6 6.9347 4.4994 1.1372 15 6 8.0805 5.2186 0.8312 16 6 9.1370 4.5862 0.2353 17 6 9.0654 3.2315 -0.0633 18 6 7.9490 2.5055 0.2287 19 6 6.8508 3.1256 0.8460 20 7 2.0184 -0.6906 -1.1961 21 6 2.1492 -0.0075 -2.3757 22 1 1.8928 1.0404 -2.4241 23 6 2.6124 -0.6618 -3.5089 24 7 2.9253 -1.9388 -3.4498 25 14 2.7915 0.2702 -5.1179 26 1 4.1538 0.8552 -5.2021 27 1 2.5815 -0.6610 -6.2554 28 1 1.7815 1.3574 -5.1753 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.8000 -2.4820 2.3596 35 1 5.1713 -1.3611 2.5388 36 1 3.6545 -1.0594 3.4195 37 1 3.3285 1.4128 1.9029 38 1 8.1379 6.2721 1.0617 39 1 10.0308 5.1429 -0.0049 40 1 9.9073 2.7458 -0.5342 41 1 7.9112 1.4529 -0.0103 42 1 2.2491 -1.6318 -1.1525 43 1 3.2486 -2.3962 -4.2418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134418170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:21 Heat of formation + Delta-G solvation = 1.649497 kcal Electronic energy + Delta-G solvation = -26221.781056 eV Core-core repulsion = 22585.463199 eV Total energy + Delta-G solvation = -3636.317857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70827 -40.28899 -38.40618 -37.88524 -36.12144 -34.05132 -32.24573 -32.09894 -31.51571 -30.45299 -27.67129 -27.17315 -25.68643 -24.19121 -23.64549 -22.26886 -21.53496 -21.23666 -19.77147 -19.31991 -18.61750 -17.57260 -17.02522 -16.74783 -16.51572 -16.21222 -15.88215 -15.65364 -15.56893 -15.32107 -14.98701 -14.72863 -14.52902 -14.27033 -13.64796 -13.42819 -13.35567 -13.19942 -13.13949 -12.97905 -12.84364 -12.71962 -12.69015 -12.42843 -12.27164 -12.21202 -11.87199 -11.75412 -11.59014 -11.47246 -11.02722 -10.93730 -10.88514 -10.12599 -10.09812 -8.97416 -8.91305 -7.94033 -5.19565 -0.79491 0.03350 0.26655 0.56911 0.61742 1.39263 1.42007 1.48957 1.97687 2.11172 2.53674 2.63953 3.21548 3.39796 3.56002 3.76817 3.89167 3.98520 4.04990 4.09481 4.30681 4.36128 4.38615 4.49783 4.50569 4.65039 4.74892 4.78179 4.80003 4.88988 4.94945 4.99481 5.06463 5.12179 5.19046 5.30071 5.34278 5.36401 5.44511 5.48197 5.56656 5.60334 5.82594 6.29131 6.46135 7.10986 7.34996 8.13961 8.35419 9.29529 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.004072 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.450263 B = 6874.292366 C = 8062.490475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.054 0.946 7 C -0.150 4.150 8 N -0.686 5.686 9 C 0.579 3.421 10 O -0.560 6.560 11 C 0.067 3.933 12 N -0.505 5.505 13 S 0.443 5.557 14 C -0.213 4.213 15 C -0.071 4.071 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.075 4.075 19 C -0.116 4.116 20 N -0.730 5.730 21 C -0.229 4.229 22 H 0.064 0.936 23 C -0.074 4.074 24 N -0.966 5.966 25 Si 0.959 3.041 26 H -0.295 1.295 27 H -0.291 1.291 28 H -0.270 1.270 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.156 0.844 41 H 0.120 0.880 42 H 0.372 0.628 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 16.099 16.433 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.052 0.948 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.073 0.927 7 C -0.208 4.208 8 N -0.337 5.337 9 C 0.361 3.639 10 O -0.438 6.438 11 C -0.120 4.120 12 N -0.333 5.333 13 S 0.603 5.397 14 C -0.334 4.334 15 C -0.092 4.092 16 C -0.102 4.102 17 C -0.132 4.132 18 C -0.098 4.098 19 C -0.126 4.126 20 N -0.371 5.371 21 C -0.361 4.361 22 H 0.082 0.918 23 C -0.266 4.266 24 N -0.617 5.617 25 Si 0.789 3.211 26 H -0.223 1.223 27 H -0.217 1.217 28 H -0.195 1.195 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.190 0.810 39 H 0.195 0.805 40 H 0.174 0.826 41 H 0.138 0.862 42 H 0.204 0.796 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.070 16.847 16.976 25.241 hybrid contribution 0.887 -1.421 -2.005 2.613 sum 8.957 15.427 14.970 23.288 Atomic orbital electron populations 1.22288 0.97516 1.01063 1.00597 1.20485 0.92818 0.94896 0.86232 0.94839 1.22084 0.92537 1.02582 0.98397 1.20991 0.95936 0.80065 0.98952 0.92744 1.22081 1.00511 1.00444 0.97791 1.45766 1.15413 1.12012 1.60557 1.17495 0.82767 0.85437 0.78192 1.90761 1.52459 1.55739 1.44847 1.21801 0.91925 0.94672 1.03606 1.71121 1.34317 1.07450 1.20418 1.80902 0.99232 1.06642 1.52952 1.24574 1.04218 0.96818 1.07831 1.20479 0.89579 1.01144 0.98029 1.21570 0.99465 0.93968 0.95230 1.21289 0.97504 0.95357 0.99024 1.20868 0.91890 1.00868 0.96132 1.19752 0.94457 0.93996 1.04442 1.42558 1.78268 1.10108 1.06127 1.19450 1.34446 0.93596 0.88622 0.91809 1.25395 1.03324 0.96845 1.01026 1.69787 1.52841 1.09932 1.29126 0.85347 0.77514 0.77768 0.80493 1.22315 1.21730 1.19511 0.95222 0.93461 0.90729 0.87869 0.89765 0.90435 0.94126 0.90236 0.75161 0.81019 0.80505 0.82631 0.86232 0.79609 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.49 71.98 0.68 -4.70 16 2 C 0.16 6.43 2.84 44.99 0.13 6.56 16 3 H 0.03 1.40 7.56 -2.39 -0.02 1.38 16 4 C -0.12 -3.60 4.29 30.60 0.13 -3.47 16 5 C 0.14 4.99 2.52 44.99 0.11 5.10 16 6 H 0.05 2.51 7.05 -2.39 -0.02 2.49 16 7 C -0.15 -4.20 9.48 71.98 0.68 -3.51 16 8 N -0.69 -23.21 4.44 -445.83 -1.98 -25.19 16 9 C 0.58 22.49 7.77 86.65 0.67 23.17 16 10 O -0.56 -25.66 14.67 -4.06 -0.06 -25.72 16 11 C 0.07 2.25 6.82 43.85 0.30 2.55 16 12 N -0.51 -14.49 10.49 -64.57 -0.68 -15.16 16 13 S 0.44 9.24 23.36 -56.49 -1.32 7.92 16 14 C -0.21 -4.88 6.73 22.98 0.15 -4.72 16 15 C -0.07 -1.08 10.03 22.04 0.22 -0.86 16 16 C -0.08 -1.11 10.00 22.09 0.22 -0.89 16 17 C -0.11 -2.23 9.93 21.99 0.22 -2.01 16 18 C -0.08 -2.20 9.57 22.36 0.21 -1.98 16 19 C -0.12 -3.56 6.10 -20.17 -0.12 -3.69 16 20 N -0.73 -37.66 4.49 -322.94 -1.45 -39.11 16 21 C -0.23 -13.33 9.93 84.03 0.83 -12.50 16 22 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 23 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 24 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 25 Si 0.96 49.00 29.55 68.60 2.03 51.03 16 26 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 27 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 28 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.41 12.01 8.04 -92.71 -0.75 11.27 16 38 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 40 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.12 4.10 6.64 -2.91 -0.02 4.08 16 42 H 0.37 20.63 7.80 -92.71 -0.72 19.91 16 43 H 0.25 15.47 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -78.29 374.93 1.32 -76.97 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: -0.42 Total: 35.55 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.92 Total: -4.93 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -3.83 Total: -140.82 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Atomic # 16 Polarization: 9.24 SS G_CDS: -1.32 Total: 7.92 kcal Total: -78.29 1.32 -76.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.622 kcal (2) G-P(sol) polarization free energy of solvation -78.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds