Wall clock time and date at job start Tue Mar 31 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21619 * 119.99893 * 0.02562 * 18 17 2 20 20 C 1.47377 * 119.99817 * 179.97438 * 18 17 2 21 21 N 1.29688 * 121.83091 * 0.02604 * 20 18 17 22 22 S 1.56005 * 111.74134 * 179.97438 * 21 20 18 23 23 C 1.76257 * 97.56232 * 359.97438 * 22 21 20 24 24 C 1.38694 * 134.18519 * 180.02562 * 23 22 21 25 25 C 1.36805 * 119.62604 * 179.97438 * 24 23 22 26 26 C 1.38902 * 120.31318 * 0.02748 * 25 24 23 27 27 C 1.36338 * 121.03105 * 359.97438 * 26 25 24 28 28 C 1.40422 * 119.95860 * 359.72994 * 27 26 25 29 29 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 31 31 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 32 32 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 33 33 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 34 34 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 35 35 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 37 37 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 38 38 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 39 39 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 40 40 H 1.08002 * 120.19129 * 359.95711 * 24 23 22 41 41 H 1.08007 * 119.84680 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.48866 * 179.97438 * 26 25 24 43 43 H 1.07992 * 120.02128 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8573 1.1616 2.4119 20 6 2.6377 -0.7132 3.5606 21 7 2.9561 -1.9703 3.5425 22 16 3.4456 -2.4625 4.9396 23 6 3.2759 -0.9321 5.7974 24 6 3.5107 -0.5239 7.1019 25 6 3.2702 0.7749 7.4578 26 6 2.7931 1.6819 6.5201 27 6 2.5554 1.3020 5.2325 28 6 2.7986 -0.0229 4.8360 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.6263 -0.6888 -3.4657 35 1 5.1507 -1.1479 -2.6701 36 1 3.7721 -2.2742 -2.6699 37 1 3.6646 -2.0586 0.2387 38 1 4.4079 -2.8955 1.5989 39 1 2.2489 -1.6318 1.1527 40 1 3.8810 -1.2275 7.8329 41 1 3.4523 1.0968 8.4726 42 1 2.6075 2.7039 6.8156 43 1 2.1848 2.0208 4.5168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134418171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:26 Heat of formation + Delta-G solvation = 34.418232 kcal Electronic energy + Delta-G solvation = -27360.651907 eV Core-core repulsion = 23725.755009 eV Total energy + Delta-G solvation = -3634.896898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.14372 -38.85708 -36.93303 -36.30077 -34.30358 -32.40718 -30.85987 -30.70431 -30.07850 -28.20505 -26.40861 -25.54862 -23.40711 -22.85581 -22.31235 -20.73508 -20.32471 -19.57756 -18.27685 -17.29450 -17.04145 -16.18300 -15.59945 -15.01509 -14.97844 -14.79156 -14.45990 -14.05770 -13.80427 -13.65143 -13.55873 -13.26177 -13.05905 -12.86745 -12.16864 -12.04272 -11.90675 -11.85114 -11.72704 -11.57461 -11.46234 -11.06751 -10.76426 -10.62703 -10.44885 -10.40755 -10.26716 -10.09659 -9.95809 -9.47918 -9.34153 -9.10045 -8.91172 -8.74638 -8.44688 -7.42616 -6.91900 -5.98854 -2.97558 0.84134 1.35430 1.80150 2.05167 2.35799 3.52646 3.55418 3.56383 3.69467 3.71658 4.05209 4.69972 4.71128 4.92737 5.04170 5.08210 5.32619 5.38958 5.44657 5.52967 5.60179 5.68740 5.69595 5.71969 5.82897 5.93102 5.95494 6.09019 6.15796 6.19508 6.28986 6.30785 6.36858 6.39053 6.48952 6.52831 6.59067 6.78175 6.82481 7.01457 7.03325 7.09584 7.88856 8.09591 8.74605 8.84654 9.31268 10.14533 10.30096 11.48155 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.005819 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.838030 B = 4811.049659 C = 6336.310968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.086 0.914 4 C -0.135 4.135 5 C 0.175 3.825 6 H 0.048 0.952 7 C -0.162 4.162 8 N -0.726 5.726 9 C -0.325 4.325 10 H 0.058 0.942 11 C -0.038 4.038 12 N -0.929 5.929 13 Si 1.065 2.935 14 H -0.285 1.285 15 H -0.298 1.298 16 H -0.299 1.299 17 N -0.680 5.680 18 C 0.604 3.396 19 O -0.551 6.551 20 C 0.072 3.928 21 N -0.433 5.433 22 S 0.421 5.579 23 C -0.218 4.218 24 C -0.073 4.073 25 C -0.103 4.103 26 C -0.127 4.127 27 C -0.046 4.046 28 C -0.078 4.078 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.407 0.593 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 3.154 6.012 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.065 3.935 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.371 5.371 9 C -0.456 4.456 10 H 0.076 0.924 11 C -0.237 4.237 12 N -0.575 5.575 13 Si 0.898 3.102 14 H -0.211 1.211 15 H -0.226 1.226 16 H -0.227 1.227 17 N -0.332 5.332 18 C 0.386 3.614 19 O -0.429 6.429 20 C -0.115 4.115 21 N -0.259 5.259 22 S 0.580 5.420 23 C -0.339 4.339 24 C -0.095 4.095 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.068 4.068 28 C -0.090 4.090 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.235 1.554 6.584 9.905 hybrid contribution -1.160 1.527 -1.189 2.257 sum -8.394 3.082 5.395 10.443 Atomic orbital electron populations 1.22207 0.96001 1.01731 1.02096 1.20871 0.92665 0.97779 0.84223 0.89627 1.22231 0.97979 1.00528 0.96591 1.20203 0.89423 0.95867 0.88015 0.93419 1.22406 1.01600 1.00178 0.98066 1.42460 1.19084 1.40040 1.35494 1.19896 0.94310 1.16530 1.14893 0.92411 1.25415 1.05060 0.97465 0.95759 1.70817 1.14064 1.29552 1.43017 0.83438 0.75529 0.75138 0.76143 1.21083 1.22553 1.22725 1.45806 1.64664 1.14505 1.08237 1.16985 0.76896 0.85545 0.81965 1.90678 1.52249 1.15043 1.84965 1.21633 1.06084 0.88896 0.94866 1.71376 1.13995 1.16702 1.23867 1.81357 1.59003 1.09308 0.92323 1.24527 1.07013 1.03028 0.99315 1.19856 1.00374 0.96424 0.92811 1.20927 0.99086 0.93029 0.99576 1.20785 1.00907 0.99870 0.93190 1.20763 0.96320 0.93597 0.96156 1.19626 1.02617 0.95657 0.91074 0.92795 0.92267 0.91919 0.90580 0.91886 0.94542 0.92845 0.93802 0.80364 0.93025 0.75467 0.85372 0.85474 0.85583 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.15 0.35 -1.87 16 2 C 0.15 2.48 2.57 -67.93 -0.17 2.31 16 3 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 4 C -0.13 -2.10 4.43 -26.73 -0.12 -2.22 16 5 C 0.17 3.39 2.89 -67.93 -0.20 3.20 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 C -0.16 -2.91 9.49 37.16 0.35 -2.55 16 8 N -0.73 -17.04 3.84 -53.43 -0.21 -17.25 16 9 C -0.32 -8.84 9.93 -15.06 -0.15 -8.99 16 10 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 11 C -0.04 -1.06 5.50 -17.43 -0.10 -1.15 16 12 N -0.93 -26.00 12.94 55.49 0.72 -25.28 16 13 Si 1.07 26.29 29.92 -169.99 -5.09 21.20 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 17 N -0.68 -13.07 3.79 -54.90 -0.21 -13.28 16 18 C 0.60 12.76 7.77 -12.54 -0.10 12.67 16 19 O -0.55 -12.11 14.68 5.26 0.08 -12.04 16 20 C 0.07 1.50 6.82 -81.99 -0.56 0.94 16 21 N -0.43 -9.00 9.23 28.25 0.26 -8.73 16 22 S 0.42 7.57 23.36 -107.50 -2.51 5.06 16 23 C -0.22 -3.74 6.73 -38.50 -0.26 -4.00 16 24 C -0.07 -1.00 10.03 -39.93 -0.40 -1.40 16 25 C -0.10 -1.26 10.00 -39.85 -0.40 -1.66 16 26 C -0.13 -1.70 9.93 -40.02 -0.40 -2.10 16 27 C -0.05 -0.78 9.57 -39.44 -0.38 -1.16 16 28 C -0.08 -1.50 6.10 -105.09 -0.64 -2.14 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.36 8.65 4.54 -40.82 -0.19 8.47 16 38 H 0.26 7.13 6.28 -40.82 -0.26 6.87 16 39 H 0.41 8.13 5.95 -40.82 -0.24 7.89 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.14 2.43 6.64 -52.49 -0.35 2.08 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -30.95 366.53 -10.29 -41.25 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.70 Total: 13.66 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.16 Total: -10.11 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 0.57 Total: -64.54 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.20 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -2.51 Total: 5.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.95 -10.29 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.665 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds