Wall clock time and date at job start Tue Mar 31 2020 18:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21619 * 119.99893 * 0.02562 * 18 17 2 20 20 C 1.47377 * 119.99817 * 179.97438 * 18 17 2 21 21 N 1.29688 * 121.83091 * 0.02604 * 20 18 17 22 22 S 1.56005 * 111.74134 * 179.97438 * 21 20 18 23 23 C 1.76257 * 97.56232 * 359.97438 * 22 21 20 24 24 C 1.38694 * 134.18519 * 180.02562 * 23 22 21 25 25 C 1.36805 * 119.62604 * 179.97438 * 24 23 22 26 26 C 1.38902 * 120.31318 * 0.02748 * 25 24 23 27 27 C 1.36338 * 121.03105 * 359.97438 * 26 25 24 28 28 C 1.40422 * 119.95860 * 359.72994 * 27 26 25 29 29 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 31 31 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 32 32 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 33 33 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 34 34 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 35 35 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 37 37 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 38 38 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 39 39 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 40 40 H 1.08002 * 120.19129 * 359.95711 * 24 23 22 41 41 H 1.08007 * 119.84680 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.48866 * 179.97438 * 26 25 24 43 43 H 1.07992 * 120.02128 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8573 1.1616 2.4119 20 6 2.6377 -0.7132 3.5606 21 7 2.9561 -1.9703 3.5425 22 16 3.4456 -2.4625 4.9396 23 6 3.2759 -0.9321 5.7974 24 6 3.5107 -0.5239 7.1019 25 6 3.2702 0.7749 7.4578 26 6 2.7931 1.6819 6.5201 27 6 2.5554 1.3020 5.2325 28 6 2.7986 -0.0229 4.8360 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.6263 -0.6888 -3.4657 35 1 5.1507 -1.1479 -2.6701 36 1 3.7721 -2.2742 -2.6699 37 1 3.6646 -2.0586 0.2387 38 1 4.4079 -2.8955 1.5989 39 1 2.2489 -1.6318 1.1527 40 1 3.8810 -1.2275 7.8329 41 1 3.4523 1.0968 8.4726 42 1 2.6075 2.7039 6.8156 43 1 2.1848 2.0208 4.5168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134418171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:25 Heat of formation + Delta-G solvation = 16.410546 kcal Electronic energy + Delta-G solvation = -27361.432779 eV Core-core repulsion = 23725.755009 eV Total energy + Delta-G solvation = -3635.677770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54941 -40.22631 -38.44719 -37.71490 -35.99011 -34.18645 -32.16394 -32.01021 -31.37764 -29.98589 -27.72695 -26.97877 -25.41872 -24.05812 -23.55099 -22.14984 -21.81744 -21.12501 -19.62566 -19.26158 -18.45997 -17.51904 -16.98774 -16.67614 -16.37791 -16.11101 -15.85886 -15.75268 -15.46206 -15.19148 -14.97022 -14.61832 -14.48921 -14.34423 -13.57887 -13.43327 -13.19550 -13.13528 -13.00480 -12.92395 -12.76467 -12.62847 -12.54871 -12.23095 -12.11157 -11.90751 -11.81939 -11.64742 -11.56738 -11.09758 -10.89806 -10.84649 -10.73214 -10.00803 -9.95546 -8.87543 -8.75749 -8.14913 -5.07800 -0.49311 0.15373 0.49177 0.70699 0.93427 1.50397 1.57710 1.73270 2.09153 2.30861 2.69619 2.75636 3.41053 3.54556 3.63222 3.76454 3.87683 4.03821 4.07076 4.14515 4.26161 4.40011 4.45092 4.49242 4.58244 4.60214 4.73366 4.75782 4.80704 4.95824 5.00016 5.00980 5.03766 5.04843 5.26218 5.27402 5.30459 5.43518 5.48957 5.52593 5.64575 5.73110 5.92828 6.51807 6.72483 7.17059 7.30102 8.14967 8.27795 9.33304 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.005819 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.838030 B = 4811.049659 C = 6336.310968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.062 0.938 4 C -0.120 4.120 5 C 0.167 3.833 6 H 0.026 0.974 7 C -0.151 4.151 8 N -0.731 5.731 9 C -0.331 4.331 10 H 0.040 0.960 11 C -0.081 4.081 12 N -0.936 5.936 13 Si 1.100 2.900 14 H -0.287 1.287 15 H -0.286 1.286 16 H -0.302 1.302 17 N -0.677 5.677 18 C 0.592 3.408 19 O -0.572 6.572 20 C 0.047 3.953 21 N -0.461 5.461 22 S 0.424 5.576 23 C -0.225 4.225 24 C -0.075 4.075 25 C -0.086 4.086 26 C -0.113 4.113 27 C -0.074 4.074 28 C -0.113 4.113 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.045 0.955 37 H 0.359 0.641 38 H 0.253 0.747 39 H 0.403 0.597 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 3.758 7.212 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.158 4.158 5 C 0.059 3.941 6 H 0.044 0.956 7 C -0.211 4.211 8 N -0.376 5.376 9 C -0.463 4.463 10 H 0.059 0.941 11 C -0.277 4.277 12 N -0.582 5.582 13 Si 0.930 3.070 14 H -0.213 1.213 15 H -0.213 1.213 16 H -0.230 1.230 17 N -0.328 5.328 18 C 0.375 3.625 19 O -0.452 6.452 20 C -0.140 4.140 21 N -0.289 5.289 22 S 0.584 5.416 23 C -0.347 4.347 24 C -0.097 4.097 25 C -0.109 4.109 26 C -0.132 4.132 27 C -0.096 4.096 28 C -0.123 4.123 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.193 0.807 38 H 0.064 0.936 39 H 0.240 0.760 40 H 0.180 0.820 41 H 0.195 0.805 42 H 0.180 0.820 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.780 2.157 7.732 11.179 hybrid contribution -1.011 1.437 -1.475 2.294 sum -8.791 3.594 6.257 11.373 Atomic orbital electron populations 1.22101 0.93269 1.02685 1.02763 1.21069 0.94743 0.96373 0.83818 0.92010 1.22150 0.94875 1.01343 0.97475 1.20419 0.92033 0.94216 0.87479 0.95591 1.22245 0.99966 1.00652 0.98246 1.42488 1.18128 1.40307 1.36671 1.19948 0.95695 1.15863 1.14814 0.94149 1.26295 1.07235 0.97812 0.96396 1.70863 1.14055 1.30041 1.43270 0.82944 0.73561 0.74543 0.75950 1.21257 1.21287 1.22975 1.45913 1.64073 1.14184 1.08582 1.17278 0.76937 0.85552 0.82757 1.90636 1.53419 1.15728 1.85463 1.21875 1.07017 0.89346 0.95713 1.71214 1.14871 1.17024 1.25754 1.81002 1.58787 1.10086 0.91764 1.24715 1.07743 1.01691 1.00505 1.20423 0.99469 0.98004 0.91776 1.21506 0.96237 0.91760 1.01368 1.21260 0.98421 1.01870 0.91650 1.20839 0.98341 0.92648 0.97798 1.19855 1.04486 0.97067 0.90917 0.91634 0.93918 0.88901 0.86712 0.90971 0.90917 0.95495 0.93575 0.80724 0.93599 0.76006 0.82003 0.80531 0.82010 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.48 71.98 0.68 -3.26 16 2 C 0.14 4.80 2.57 44.99 0.12 4.92 16 3 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 4 C -0.12 -3.57 4.43 30.59 0.14 -3.44 16 5 C 0.17 6.49 2.89 44.99 0.13 6.62 16 6 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 7 C -0.15 -5.26 9.49 71.98 0.68 -4.57 16 8 N -0.73 -35.24 3.84 -322.95 -1.24 -36.48 16 9 C -0.33 -18.58 9.93 84.03 0.83 -17.75 16 10 H 0.04 2.36 7.83 -2.91 -0.02 2.34 16 11 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 12 N -0.94 -53.64 12.94 21.65 0.28 -53.36 16 13 Si 1.10 54.12 29.92 68.60 2.05 56.17 16 14 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 17 N -0.68 -27.09 3.79 -445.84 -1.69 -28.78 16 18 C 0.59 26.46 7.77 86.65 0.67 27.13 16 19 O -0.57 -26.67 14.68 -4.09 -0.06 -26.73 16 20 C 0.05 2.06 6.82 43.85 0.30 2.36 16 21 N -0.46 -20.08 9.23 -64.55 -0.60 -20.68 16 22 S 0.42 15.63 23.36 -56.49 -1.32 14.31 16 23 C -0.23 -7.66 6.73 22.97 0.15 -7.50 16 24 C -0.07 -1.84 10.03 22.04 0.22 -1.62 16 25 C -0.09 -1.73 10.00 22.09 0.22 -1.50 16 26 C -0.11 -2.69 9.93 21.99 0.22 -2.47 16 27 C -0.07 -2.50 9.57 22.36 0.21 -2.28 16 28 C -0.11 -4.42 6.10 -20.17 -0.12 -4.54 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.36 17.67 4.54 -92.71 -0.42 17.25 16 38 H 0.25 14.42 6.28 -92.71 -0.58 13.84 16 39 H 0.40 16.80 5.95 -92.71 -0.55 16.25 16 40 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.13 4.54 6.64 -2.91 -0.02 4.52 16 Total: -1.00 -71.59 366.53 2.61 -68.97 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.26 Total: 38.61 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.93 Total: -12.04 kcal Atomic # 7 Polarization: -136.05 SS G_CDS: -3.25 Total: -139.30 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.06 Total: -26.73 kcal Atomic # 14 Polarization: 54.12 SS G_CDS: 2.05 Total: 56.17 kcal Atomic # 16 Polarization: 15.63 SS G_CDS: -1.32 Total: 14.31 kcal Total: -71.59 2.61 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134418171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.384 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds