Wall clock time and date at job start Tue Mar 31 2020 18:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47040 * 2 1 4 4 C 1.53000 * 109.47364 * 240.00522 * 2 1 3 5 5 C 1.52993 * 109.47196 * 174.99665 * 4 2 1 6 6 H 1.09002 * 109.47539 * 55.00043 * 5 4 2 7 7 C 1.53006 * 109.46990 * 174.99832 * 5 4 2 8 8 N 1.46500 * 109.47425 * 294.99570 * 5 4 2 9 9 C 1.34772 * 120.00158 * 154.99928 * 8 5 4 10 10 O 1.21623 * 120.00293 * 0.02562 * 9 8 5 11 11 C 1.47194 * 120.00004 * 180.02562 * 9 8 5 12 12 C 1.33790 * 124.65111 * 180.02562 * 11 9 8 13 13 C 1.40097 * 115.50365 * 179.73066 * 12 11 9 14 14 C 1.41721 * 129.98745 * 179.57976 * 13 12 11 15 15 C 1.36039 * 119.33678 * 180.36246 * 14 13 12 16 16 N 1.32317 * 121.57995 * 0.30278 * 15 14 13 17 17 C 1.31358 * 122.05318 * 359.97223 * 16 15 14 18 18 C 1.39727 * 120.59927 * 0.02562 * 17 16 15 19 19 S 1.75536 * 124.65107 * 359.97438 * 11 9 8 20 20 N 1.46497 * 109.47225 * 119.99894 * 2 1 3 21 21 C 1.36934 * 120.00119 * 275.00165 * 20 2 1 22 22 H 1.08001 * 120.00031 * 359.97438 * 21 20 2 23 23 C 1.38815 * 119.99680 * 180.02562 * 21 20 2 24 24 N 1.31623 * 119.99681 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00293 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47405 * 90.00430 * 25 23 21 27 27 H 1.48499 * 109.46855 * 210.00516 * 25 23 21 28 28 H 1.48506 * 109.46860 * 330.00006 * 25 23 21 29 29 H 1.09007 * 109.47040 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47282 * 299.99762 * 1 2 3 31 31 H 1.08996 * 109.47227 * 60.00129 * 1 2 3 32 32 H 1.08996 * 109.47289 * 54.99393 * 4 2 1 33 33 H 1.09000 * 109.47015 * 294.99671 * 4 2 1 34 34 H 1.09001 * 109.46988 * 299.99901 * 7 5 4 35 35 H 1.08994 * 109.47039 * 59.99959 * 7 5 4 36 36 H 1.09000 * 109.46783 * 179.97438 * 7 5 4 37 37 H 0.96995 * 119.99625 * 335.00670 * 8 5 4 38 38 H 1.08000 * 122.24874 * 359.97438 * 12 11 9 39 39 H 1.08002 * 120.33442 * 0.64354 * 14 13 12 40 40 H 1.08002 * 119.21330 * 180.27290 * 15 14 13 41 41 H 1.08003 * 119.69651 * 179.97438 * 17 16 15 42 42 H 0.97003 * 119.99598 * 95.00607 * 20 2 1 43 43 H 0.96994 * 120.00072 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 1 3.9955 -0.9921 -0.3869 7 6 4.0852 -1.4380 -2.4926 8 7 3.9479 0.7896 -1.4925 9 6 5.1611 1.2138 -1.0867 10 8 5.9381 0.4321 -0.5726 11 6 5.5457 2.6233 -1.2659 12 6 6.7226 3.1431 -0.8989 13 6 6.8884 4.5084 -1.1656 14 6 7.9902 5.3604 -0.9032 15 6 7.9153 6.6732 -1.2518 16 7 6.8349 7.1773 -1.8257 17 6 5.7789 6.4423 -2.0906 18 6 5.7602 5.0824 -1.7698 19 16 4.5237 3.8523 -1.9913 20 7 2.0183 -0.6906 1.1961 21 6 2.1491 -0.0075 2.3757 22 1 1.8926 1.0405 2.4241 23 6 2.6124 -0.6618 3.5089 24 7 2.7376 -0.0053 4.6429 25 14 3.0567 -2.4742 3.4250 26 1 4.4891 -2.6164 3.0607 27 1 2.8176 -3.1042 4.7483 28 1 2.2162 -3.1428 2.3994 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2616 -2.1370 33 1 1.7517 -1.7714 -1.2057 34 1 3.8002 -2.4817 -2.3596 35 1 3.6546 -1.0591 -3.4194 36 1 5.1714 -1.3607 -2.5388 37 1 3.3283 1.4130 -1.9028 38 1 7.4946 2.5492 -0.4323 39 1 8.8820 4.9703 -0.4354 40 1 8.7578 7.3197 -1.0550 41 1 4.9170 6.8934 -2.5597 42 1 2.2491 -1.6317 1.1525 43 1 3.0609 -0.4625 5.4348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134638075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:22 Heat of formation + Delta-G solvation = 4.262172 kcal Electronic energy + Delta-G solvation = -25813.872431 eV Core-core repulsion = 22177.667868 eV Total energy + Delta-G solvation = -3636.204563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56865 -40.96011 -38.58972 -37.16414 -36.19516 -34.14702 -32.71767 -32.46845 -31.33877 -30.83490 -27.64577 -26.42110 -25.36163 -25.08952 -23.37662 -22.11455 -21.49914 -21.35374 -19.96765 -19.55759 -17.97088 -17.74088 -17.34675 -16.88757 -16.61624 -16.28471 -15.91022 -15.63263 -15.45799 -15.27703 -15.20022 -14.90017 -14.62463 -14.38877 -14.12595 -14.03211 -13.47895 -13.35916 -13.12762 -13.05117 -12.91196 -12.83918 -12.67470 -12.32130 -12.09721 -12.02756 -11.90511 -11.72506 -11.47342 -11.31555 -11.03987 -10.97897 -10.78408 -10.36757 -10.07145 -9.28201 -8.97785 -8.02018 -5.32461 -0.99906 -0.06876 0.13886 0.57124 0.80097 1.32494 1.38912 1.43470 1.88641 2.03756 2.47665 2.67120 3.31215 3.35042 3.47362 3.57309 3.63298 3.75152 3.80622 3.84529 4.04038 4.29397 4.30424 4.43335 4.48116 4.57714 4.62862 4.63982 4.74694 4.80277 4.86185 4.90872 4.98007 5.05211 5.07252 5.16648 5.30407 5.32617 5.47951 5.51114 5.59646 5.79127 6.22706 6.33806 6.82200 7.01794 7.10663 7.88914 8.04938 9.20227 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.003402 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.301476 B = 8228.319658 C = 8866.535291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.040 0.960 4 C -0.123 4.123 5 C 0.139 3.861 6 H 0.055 0.945 7 C -0.153 4.153 8 N -0.697 5.697 9 C 0.581 3.419 10 O -0.565 6.565 11 C -0.225 4.225 12 C -0.061 4.061 13 C -0.062 4.062 14 C -0.119 4.119 15 C 0.075 3.925 16 N -0.482 5.482 17 C 0.156 3.844 18 C -0.211 4.211 19 S 0.205 5.795 20 N -0.748 5.748 21 C -0.214 4.214 22 H 0.053 0.947 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.947 3.053 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.244 1.244 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.408 0.592 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.191 0.809 41 H 0.191 0.809 42 H 0.362 0.638 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 8.764 -22.475 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.058 0.942 4 C -0.161 4.161 5 C 0.035 3.965 6 H 0.074 0.926 7 C -0.211 4.211 8 N -0.348 5.348 9 C 0.366 3.634 10 O -0.446 6.446 11 C -0.345 4.345 12 C -0.094 4.094 13 C -0.078 4.078 14 C -0.141 4.141 15 C -0.074 4.074 16 N -0.191 5.191 17 C -0.014 4.014 18 C -0.329 4.329 19 S 0.471 5.529 20 N -0.392 5.392 21 C -0.346 4.346 22 H 0.071 0.929 23 C -0.258 4.258 24 N -0.639 5.639 25 Si 0.776 3.224 26 H -0.218 1.218 27 H -0.224 1.224 28 H -0.168 1.168 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.245 0.755 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.208 0.792 41 H 0.207 0.793 42 H 0.196 0.804 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.665 9.186 -22.798 24.850 hybrid contribution 1.663 -1.702 1.790 2.977 sum 5.328 7.484 -21.008 22.929 Atomic orbital electron populations 1.22284 0.97063 1.01483 1.00861 1.20524 0.93028 0.95302 0.85399 0.94164 1.22180 0.92236 1.03183 0.98482 1.21085 0.96182 0.79992 0.99202 0.92633 1.22117 1.00580 1.00559 0.97876 1.45773 1.15265 1.12344 1.61372 1.17370 0.82601 0.85736 0.77674 1.90808 1.52655 1.56194 1.44908 1.23995 1.01031 0.98428 1.11076 1.20290 0.97318 0.93826 0.97937 1.18490 0.95847 0.93100 1.00322 1.22126 0.98250 0.94148 0.99582 1.22682 0.96630 0.93536 0.94542 1.67783 1.00725 1.38518 1.12111 1.22784 0.97404 0.86432 0.94790 1.24344 0.99466 1.01150 1.07983 1.83639 1.14261 0.94748 1.60230 1.42815 1.79929 1.09341 1.07136 1.18958 1.34056 0.94068 0.87501 0.92929 1.25425 1.02813 1.02177 0.95393 1.69880 1.55313 1.37541 1.01170 0.85513 0.78156 0.81620 0.77161 1.21787 1.22418 1.16797 0.92883 0.95584 0.90190 0.86948 0.88917 0.90138 0.89798 0.94190 0.75513 0.82980 0.81723 0.79192 0.79259 0.80444 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 9.49 71.98 0.68 -4.06 16 2 C 0.16 5.58 2.84 44.99 0.13 5.71 16 3 H 0.04 1.47 7.56 -2.38 -0.02 1.45 16 4 C -0.12 -2.92 4.29 30.59 0.13 -2.79 16 5 C 0.14 3.93 2.52 44.99 0.11 4.05 16 6 H 0.06 2.14 7.05 -2.39 -0.02 2.12 16 7 C -0.15 -3.37 9.48 71.98 0.68 -2.68 16 8 N -0.70 -19.21 4.44 -446.03 -1.98 -21.19 16 9 C 0.58 19.56 7.76 86.60 0.67 20.24 16 10 O -0.57 -24.08 16.39 -4.10 -0.07 -24.15 16 11 C -0.22 -6.32 6.33 23.61 0.15 -6.17 16 12 C -0.06 -1.64 9.81 21.71 0.21 -1.43 16 13 C -0.06 -1.43 5.91 -21.48 -0.13 -1.56 16 14 C -0.12 -2.13 10.13 22.62 0.23 -1.90 16 15 C 0.07 1.23 11.06 84.11 0.93 2.16 16 16 N -0.48 -9.40 10.34 -196.33 -2.03 -11.43 16 17 C 0.16 2.84 11.24 85.12 0.96 3.80 16 18 C -0.21 -4.46 6.54 23.12 0.15 -4.31 16 19 S 0.21 4.15 22.26 -56.49 -1.26 2.90 16 20 N -0.75 -33.96 4.30 -322.94 -1.39 -35.35 16 21 C -0.21 -12.34 10.41 84.03 0.87 -11.46 16 22 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 24 N -0.99 -65.53 13.97 21.65 0.30 -65.23 16 25 Si 0.95 47.51 27.74 68.60 1.90 49.41 16 26 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 27 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 28 H -0.24 -10.72 6.52 99.48 0.65 -10.07 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.41 8.66 7.65 -92.71 -0.71 7.95 16 38 H 0.15 4.18 7.96 -2.91 -0.02 4.15 16 39 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.36 16.03 5.66 -92.71 -0.52 15.50 16 43 H 0.25 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -81.38 375.04 1.49 -79.89 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.25 Total: 29.20 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.26 Total: -4.04 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.10 Total: -133.20 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.07 Total: -24.15 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.90 Total: 49.41 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.26 Total: 2.90 kcal Total: -81.38 1.49 -79.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134638075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.153 kcal (2) G-P(sol) polarization free energy of solvation -81.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds