Wall clock time and date at job start Tue Mar 31 2020 18:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47210 * 2 1 4 4 C 1.52992 * 109.47182 * 239.99966 * 2 1 3 5 5 C 1.53008 * 109.47139 * 175.00183 * 4 2 1 6 6 H 1.09002 * 109.46890 * 304.99382 * 5 4 2 7 7 C 1.53003 * 109.46985 * 185.00165 * 5 4 2 8 8 N 1.46496 * 109.46989 * 64.99802 * 5 4 2 9 9 C 1.34777 * 119.99613 * 204.99660 * 8 5 4 10 10 O 1.21619 * 120.00479 * 0.02562 * 9 8 5 11 11 C 1.47196 * 120.00022 * 180.02562 * 9 8 5 12 12 C 1.33792 * 124.65377 * 179.72516 * 11 9 8 13 13 C 1.40098 * 115.50303 * 179.79053 * 12 11 9 14 14 C 1.41722 * 129.99017 * 180.19097 * 13 12 11 15 15 C 1.36039 * 119.33797 * 180.34693 * 14 13 12 16 16 N 1.32308 * 121.57545 * 359.96139 * 15 14 13 17 17 C 1.31355 * 122.06189 * 0.02562 * 16 15 14 18 18 C 1.39730 * 120.59529 * 0.02562 * 17 16 15 19 19 S 1.75537 * 124.64894 * 0.02824 * 11 9 8 20 20 N 1.46509 * 109.47155 * 119.99560 * 2 1 3 21 21 C 1.36933 * 120.00055 * 275.00314 * 20 2 1 22 22 H 1.07995 * 120.00351 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99714 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00364 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00021 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46915 * 89.99846 * 25 23 21 27 27 H 1.48498 * 109.46996 * 209.99416 * 25 23 21 28 28 H 1.48493 * 109.47192 * 329.99688 * 25 23 21 29 29 H 1.09005 * 109.46966 * 299.99890 * 1 2 3 30 30 H 1.08990 * 109.47245 * 59.99680 * 1 2 3 31 31 H 1.08996 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47455 * 55.00056 * 4 2 1 33 33 H 1.09004 * 109.47154 * 294.99631 * 4 2 1 34 34 H 1.09000 * 109.47131 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.46667 * 299.99354 * 7 5 4 36 36 H 1.08992 * 109.47381 * 59.99614 * 7 5 4 37 37 H 0.96996 * 120.00516 * 25.00645 * 8 5 4 38 38 H 1.08005 * 122.24717 * 359.97438 * 12 11 9 39 39 H 1.08001 * 120.33175 * 0.31017 * 14 13 12 40 40 H 1.07997 * 119.21257 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.70561 * 180.02562 * 17 16 15 42 42 H 0.97001 * 119.99375 * 95.00092 * 20 2 1 43 43 H 0.96999 * 120.00436 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9910 0.2734 10 8 5.9877 -0.0827 -0.2542 11 6 5.9667 -1.7157 1.4097 12 6 7.1707 -1.4573 1.9328 13 6 7.5431 -2.2633 3.0165 14 6 8.7287 -2.2546 3.7930 15 6 8.8686 -3.1518 4.8059 16 7 7.9231 -4.0340 5.0856 17 6 6.8016 -4.0937 4.4043 18 6 6.5657 -3.2143 3.3444 19 16 5.1928 -3.0424 2.2596 20 7 2.0184 -0.6906 1.1963 21 6 2.1491 -0.0074 2.3758 22 1 1.8926 1.0406 2.4242 23 6 2.6123 -0.6616 3.5091 24 7 2.9254 -1.9387 3.4501 25 14 2.7914 0.2705 5.1180 26 1 1.5239 0.1793 5.8865 27 1 3.8962 -0.3227 5.9134 28 1 3.0962 1.6956 4.8332 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 5.1509 -1.1485 -2.6697 35 1 3.7723 -2.2741 -2.6698 36 1 3.6265 -0.6887 -3.4656 37 1 3.6648 -2.0584 0.2387 38 1 7.8112 -0.6777 1.5475 39 1 9.5135 -1.5431 3.5822 40 1 9.7731 -3.1436 5.3960 41 1 6.0551 -4.8291 4.6657 42 1 2.2491 -1.6317 1.1527 43 1 3.2495 -2.3957 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134638076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:28 Heat of formation + Delta-G solvation = 31.864152 kcal Electronic energy + Delta-G solvation = -27033.305814 eV Core-core repulsion = 23398.298163 eV Total energy + Delta-G solvation = -3635.007651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.90035 -39.32553 -37.04621 -35.40175 -34.33327 -32.52384 -31.09621 -30.95243 -29.57090 -28.74178 -26.46883 -24.71562 -23.94156 -23.54404 -21.86161 -20.44881 -20.36170 -19.54248 -18.05860 -17.46234 -16.30568 -16.21328 -15.79138 -15.29383 -14.97415 -14.60942 -14.05739 -14.00535 -13.93162 -13.80742 -13.51159 -13.38862 -13.05354 -12.88525 -12.51140 -12.27678 -12.03255 -11.89881 -11.78570 -11.51577 -11.28640 -11.13262 -10.98944 -10.90637 -10.50664 -10.42033 -10.22377 -10.08323 -9.90676 -9.51387 -9.49358 -9.29075 -9.16705 -8.60793 -8.38730 -7.47775 -6.87240 -6.03745 -3.20837 0.68499 1.43930 2.03774 2.43717 2.51326 3.31406 3.38506 3.40883 3.56673 3.81076 4.18111 4.39913 4.78564 4.92390 5.01574 5.21645 5.27481 5.33711 5.35908 5.37792 5.50572 5.56265 5.74942 5.83225 5.85490 5.88811 5.93448 5.99375 6.01496 6.09981 6.23918 6.25399 6.31177 6.40481 6.46221 6.60686 6.69422 6.73760 6.89613 6.98277 7.00516 7.42835 8.00101 8.10027 8.29354 8.72015 9.21022 9.72722 10.07827 11.09675 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.005452 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.723536 B = 5134.331931 C = 6668.943592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.052 0.948 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.086 0.914 7 C -0.163 4.163 8 N -0.695 5.695 9 C 0.597 3.403 10 O -0.551 6.551 11 C -0.222 4.222 12 C -0.097 4.097 13 C -0.052 4.052 14 C -0.129 4.129 15 C 0.056 3.944 16 N -0.489 5.489 17 C 0.165 3.835 18 C -0.247 4.247 19 S 0.317 5.683 20 N -0.714 5.714 21 C -0.194 4.194 22 H 0.073 0.927 23 C -0.024 4.024 24 N -0.898 5.898 25 Si 0.904 3.096 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.401 0.599 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.378 0.622 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -3.499 -6.868 8.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.070 0.930 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.104 0.896 7 C -0.222 4.222 8 N -0.347 5.347 9 C 0.384 3.616 10 O -0.431 6.431 11 C -0.347 4.347 12 C -0.132 4.132 13 C -0.069 4.069 14 C -0.151 4.151 15 C -0.091 4.091 16 N -0.200 5.200 17 C -0.007 4.007 18 C -0.369 4.369 19 S 0.590 5.410 20 N -0.355 5.355 21 C -0.325 4.325 22 H 0.091 0.909 23 C -0.220 4.220 24 N -0.546 5.546 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.215 1.215 28 H -0.209 1.209 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.238 0.762 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.213 0.787 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.931 -3.987 -6.633 7.976 hybrid contribution 1.065 1.434 0.870 1.987 sum 2.997 -2.553 -5.763 6.979 Atomic orbital electron populations 1.22387 0.98772 1.00929 1.00190 1.20375 0.91963 0.95901 0.86176 0.93023 1.22231 0.93906 1.01743 0.99457 1.20860 0.92491 0.97387 0.84764 0.89608 1.22213 1.01964 1.00908 0.97077 1.45868 1.17392 1.37608 1.33835 1.16959 0.81093 0.82261 0.81309 1.90715 1.62214 1.30579 1.59574 1.23927 0.99710 1.07403 1.03641 1.19688 0.96324 1.01156 0.96018 1.18094 0.94956 0.96696 0.97150 1.21591 0.96632 1.00278 0.96635 1.21837 0.97924 0.92806 0.96525 1.67585 1.01830 1.22905 1.27646 1.22151 0.94168 0.95263 0.89109 1.24523 1.00728 1.04339 1.07268 1.84931 1.08751 1.25552 1.21741 1.42634 1.76902 1.10359 1.05652 1.19468 1.32136 0.94005 0.86936 0.90874 1.24553 1.03121 0.96263 0.98046 1.69258 1.47962 1.08574 1.28811 0.86188 0.77448 0.79075 0.83766 1.21631 1.21492 1.20871 0.92764 0.94289 0.93446 0.90399 0.91595 0.92234 0.92691 0.91911 0.76171 0.84144 0.85336 0.83515 0.82798 0.78665 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.49 37.16 0.35 -2.17 16 2 C 0.17 2.80 2.89 -67.93 -0.20 2.60 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.84 4.43 -26.73 -0.12 -1.96 16 5 C 0.15 2.28 2.57 -67.93 -0.17 2.10 16 6 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 7 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 8 N -0.69 -12.14 3.79 -54.95 -0.21 -12.35 16 9 C 0.60 11.99 7.76 -12.62 -0.10 11.89 16 10 O -0.55 -12.23 16.39 5.26 0.09 -12.14 16 11 C -0.22 -4.36 6.33 -37.51 -0.24 -4.59 16 12 C -0.10 -1.84 9.81 -40.44 -0.40 -2.24 16 13 C -0.05 -0.94 5.91 -107.11 -0.63 -1.57 16 14 C -0.13 -2.02 10.13 -39.04 -0.40 -2.42 16 15 C 0.06 0.86 11.06 -18.14 -0.20 0.66 16 16 N -0.49 -8.30 10.34 -13.41 -0.14 -8.44 16 17 C 0.17 2.80 11.24 -17.20 -0.19 2.61 16 18 C -0.25 -4.50 6.54 -38.27 -0.25 -4.75 16 19 S 0.32 5.77 19.31 -107.50 -2.08 3.69 16 20 N -0.71 -14.69 3.84 -53.42 -0.21 -14.90 16 21 C -0.19 -4.65 9.93 -15.06 -0.15 -4.80 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 24 N -0.90 -21.47 10.13 55.49 0.56 -20.91 16 25 Si 0.90 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 6.97 5.56 -40.82 -0.23 6.74 16 38 H 0.14 2.54 7.96 -52.48 -0.42 2.12 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.38 7.91 5.70 -40.82 -0.23 7.68 16 43 H 0.26 6.32 8.22 -40.82 -0.34 5.98 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -27.48 368.00 -9.78 -37.25 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.88 Total: 13.18 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.43 Total: -7.06 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.01 Total: -56.60 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -2.08 Total: 3.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.48 -9.78 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134638076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.119 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds