Wall clock time and date at job start Tue Mar 31 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47210 * 2 1 4 4 C 1.52992 * 109.47182 * 239.99966 * 2 1 3 5 5 C 1.53008 * 109.47139 * 175.00183 * 4 2 1 6 6 H 1.09002 * 109.46890 * 304.99382 * 5 4 2 7 7 C 1.53003 * 109.46985 * 185.00165 * 5 4 2 8 8 N 1.46496 * 109.46989 * 64.99802 * 5 4 2 9 9 C 1.34777 * 119.99613 * 204.99660 * 8 5 4 10 10 O 1.21619 * 120.00479 * 0.02562 * 9 8 5 11 11 C 1.47196 * 120.00022 * 180.02562 * 9 8 5 12 12 C 1.33792 * 124.65377 * 179.72516 * 11 9 8 13 13 C 1.40098 * 115.50303 * 179.79053 * 12 11 9 14 14 C 1.41722 * 129.99017 * 180.19097 * 13 12 11 15 15 C 1.36039 * 119.33797 * 180.34693 * 14 13 12 16 16 N 1.32308 * 121.57545 * 359.96139 * 15 14 13 17 17 C 1.31355 * 122.06189 * 0.02562 * 16 15 14 18 18 C 1.39730 * 120.59529 * 0.02562 * 17 16 15 19 19 S 1.75537 * 124.64894 * 0.02824 * 11 9 8 20 20 N 1.46509 * 109.47155 * 119.99560 * 2 1 3 21 21 C 1.36933 * 120.00055 * 275.00314 * 20 2 1 22 22 H 1.07995 * 120.00351 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99714 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00364 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00021 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46915 * 89.99846 * 25 23 21 27 27 H 1.48498 * 109.46996 * 209.99416 * 25 23 21 28 28 H 1.48493 * 109.47192 * 329.99688 * 25 23 21 29 29 H 1.09005 * 109.46966 * 299.99890 * 1 2 3 30 30 H 1.08990 * 109.47245 * 59.99680 * 1 2 3 31 31 H 1.08996 * 109.46935 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47455 * 55.00056 * 4 2 1 33 33 H 1.09004 * 109.47154 * 294.99631 * 4 2 1 34 34 H 1.09000 * 109.47131 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.46667 * 299.99354 * 7 5 4 36 36 H 1.08992 * 109.47381 * 59.99614 * 7 5 4 37 37 H 0.96996 * 120.00516 * 25.00645 * 8 5 4 38 38 H 1.08005 * 122.24717 * 359.97438 * 12 11 9 39 39 H 1.08001 * 120.33175 * 0.31017 * 14 13 12 40 40 H 1.07997 * 119.21257 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.70561 * 180.02562 * 17 16 15 42 42 H 0.97001 * 119.99375 * 95.00092 * 20 2 1 43 43 H 0.96999 * 120.00436 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9910 0.2734 10 8 5.9877 -0.0827 -0.2542 11 6 5.9667 -1.7157 1.4097 12 6 7.1707 -1.4573 1.9328 13 6 7.5431 -2.2633 3.0165 14 6 8.7287 -2.2546 3.7930 15 6 8.8686 -3.1518 4.8059 16 7 7.9231 -4.0340 5.0856 17 6 6.8016 -4.0937 4.4043 18 6 6.5657 -3.2143 3.3444 19 16 5.1928 -3.0424 2.2596 20 7 2.0184 -0.6906 1.1963 21 6 2.1491 -0.0074 2.3758 22 1 1.8926 1.0406 2.4242 23 6 2.6123 -0.6616 3.5091 24 7 2.9254 -1.9387 3.4501 25 14 2.7914 0.2705 5.1180 26 1 1.5239 0.1793 5.8865 27 1 3.8962 -0.3227 5.9134 28 1 3.0962 1.6956 4.8332 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 5.1509 -1.1485 -2.6697 35 1 3.7723 -2.2741 -2.6698 36 1 3.6265 -0.6887 -3.4656 37 1 3.6648 -2.0584 0.2387 38 1 7.8112 -0.6777 1.5475 39 1 9.5135 -1.5431 3.5822 40 1 9.7731 -3.1436 5.3960 41 1 6.0551 -4.8291 4.6657 42 1 2.2491 -1.6317 1.1527 43 1 3.2495 -2.3957 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134638076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:27 Heat of formation + Delta-G solvation = 16.943172 kcal Electronic energy + Delta-G solvation = -27033.952837 eV Core-core repulsion = 23398.298163 eV Total energy + Delta-G solvation = -3635.654673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29505 -40.77056 -38.45947 -36.84922 -35.83191 -34.10445 -32.49957 -32.27131 -31.01088 -30.20347 -27.62026 -26.13814 -25.61825 -24.88785 -23.20728 -21.81405 -21.70421 -20.99205 -19.48593 -19.16377 -17.69041 -17.61080 -17.13727 -16.75650 -16.52251 -16.10148 -15.60355 -15.48666 -15.38456 -15.18018 -15.00779 -14.72310 -14.36820 -14.24197 -13.87084 -13.59720 -13.34139 -13.28377 -12.96383 -12.87348 -12.78522 -12.68672 -12.63027 -12.31147 -12.20997 -11.77373 -11.72501 -11.51457 -11.44147 -11.08121 -11.00165 -10.71147 -10.62321 -10.09393 -9.82065 -9.00616 -8.41758 -7.80817 -5.02692 -0.72541 0.12141 0.58239 0.98326 1.05188 1.41393 1.47719 1.48130 2.10113 2.34872 2.56408 2.84120 3.46592 3.54283 3.63745 3.80030 3.86096 3.99016 4.05212 4.10333 4.15246 4.35723 4.52994 4.55494 4.61407 4.66616 4.71804 4.82295 4.84290 4.87112 4.89537 5.06489 5.12668 5.14021 5.20100 5.30152 5.35876 5.40576 5.57844 5.61054 5.67926 5.70042 6.33070 6.53467 6.97842 7.20107 7.42325 8.10998 8.39015 9.28628 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.005452 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.723536 B = 5134.331931 C = 6668.943592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.031 0.969 4 C -0.121 4.121 5 C 0.143 3.857 6 H 0.062 0.938 7 C -0.153 4.153 8 N -0.685 5.685 9 C 0.590 3.410 10 O -0.580 6.580 11 C -0.240 4.240 12 C -0.096 4.096 13 C -0.069 4.069 14 C -0.126 4.126 15 C 0.057 3.943 16 N -0.493 5.493 17 C 0.153 3.847 18 C -0.254 4.254 19 S 0.322 5.678 20 N -0.718 5.718 21 C -0.213 4.213 22 H 0.056 0.944 23 C -0.047 4.047 24 N -0.906 5.906 25 Si 0.931 3.069 26 H -0.291 1.291 27 H -0.303 1.303 28 H -0.292 1.292 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.402 0.598 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.187 0.813 41 H 0.175 0.825 42 H 0.375 0.625 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -4.566 -7.759 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.050 0.950 4 C -0.159 4.159 5 C 0.040 3.960 6 H 0.080 0.920 7 C -0.212 4.212 8 N -0.336 5.336 9 C 0.377 3.623 10 O -0.463 6.463 11 C -0.363 4.363 12 C -0.132 4.132 13 C -0.086 4.086 14 C -0.148 4.148 15 C -0.090 4.090 16 N -0.204 5.204 17 C -0.018 4.018 18 C -0.375 4.375 19 S 0.595 5.405 20 N -0.361 5.361 21 C -0.346 4.346 22 H 0.074 0.926 23 C -0.242 4.242 24 N -0.555 5.555 25 Si 0.765 3.235 26 H -0.218 1.218 27 H -0.231 1.231 28 H -0.219 1.219 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.240 0.760 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.204 0.796 41 H 0.192 0.808 42 H 0.210 0.790 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.785 -5.073 -7.549 9.512 hybrid contribution 1.110 1.695 1.178 2.344 sum 3.894 -3.378 -6.371 8.195 Atomic orbital electron populations 1.22250 0.97349 1.01147 1.00517 1.20545 0.92930 0.95031 0.86397 0.95042 1.22166 0.92439 1.02346 0.98994 1.21076 0.93640 0.96099 0.85223 0.92026 1.22127 1.00749 1.02038 0.96240 1.45940 1.16444 1.37195 1.33993 1.17159 0.81775 0.82050 0.81340 1.90685 1.63148 1.31893 1.60563 1.24156 1.00359 1.07754 1.04034 1.19929 0.96137 1.01079 0.96029 1.18402 0.96221 0.96607 0.97375 1.21991 0.96299 1.00713 0.95758 1.22514 0.98612 0.91584 0.96324 1.67674 1.01949 1.23238 1.27495 1.22511 0.94884 0.95615 0.88822 1.24743 1.00842 1.04662 1.07240 1.84833 1.08830 1.24948 1.21886 1.42583 1.77663 1.10072 1.05767 1.19328 1.33367 0.93488 0.88395 0.92552 1.24802 1.03912 0.96833 0.98672 1.69346 1.49761 1.08132 1.28303 0.85783 0.76553 0.78032 0.83181 1.21846 1.23066 1.21864 0.95172 0.91204 0.93187 0.86837 0.90337 0.94172 0.91161 0.89118 0.76026 0.83647 0.82135 0.79641 0.80843 0.79007 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.49 71.98 0.68 -3.88 16 2 C 0.16 5.32 2.89 44.99 0.13 5.46 16 3 H 0.03 1.17 8.08 -2.38 -0.02 1.15 16 4 C -0.12 -3.05 4.43 30.59 0.14 -2.92 16 5 C 0.14 4.23 2.57 45.00 0.12 4.35 16 6 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 7 C -0.15 -3.57 9.48 71.98 0.68 -2.89 16 8 N -0.69 -23.95 3.79 -446.02 -1.69 -25.64 16 9 C 0.59 24.06 7.76 86.60 0.67 24.73 16 10 O -0.58 -26.30 16.39 -4.09 -0.07 -26.36 16 11 C -0.24 -9.46 6.33 23.61 0.15 -9.31 16 12 C -0.10 -3.62 9.81 21.71 0.21 -3.41 16 13 C -0.07 -2.42 5.91 -21.48 -0.13 -2.55 16 14 C -0.13 -3.56 10.13 22.62 0.23 -3.33 16 15 C 0.06 1.55 11.06 84.11 0.93 2.48 16 16 N -0.49 -15.44 10.34 -196.34 -2.03 -17.47 16 17 C 0.15 4.95 11.24 85.12 0.96 5.91 16 18 C -0.25 -9.00 6.54 23.12 0.15 -8.85 16 19 S 0.32 11.70 19.31 -56.49 -1.09 10.61 16 20 N -0.72 -30.00 3.84 -322.94 -1.24 -31.24 16 21 C -0.21 -10.55 9.93 84.03 0.83 -9.71 16 22 H 0.06 2.90 7.83 -2.91 -0.02 2.87 16 23 C -0.05 -2.39 5.50 84.86 0.47 -1.92 16 24 N -0.91 -44.11 10.13 21.65 0.22 -43.89 16 25 Si 0.93 44.45 29.55 68.60 2.03 46.48 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 27 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 28 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 29 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.40 13.94 5.56 -92.71 -0.52 13.43 16 38 H 0.15 5.21 7.96 -2.91 -0.02 5.19 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.38 15.80 5.70 -92.71 -0.53 15.27 16 43 H 0.25 12.46 8.22 -92.71 -0.76 11.70 16 Total: -1.00 -61.18 368.00 2.35 -58.83 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.00 Total: 34.54 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 6.22 Total: -5.85 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -4.74 Total: -118.24 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.36 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 11.70 SS G_CDS: -1.09 Total: 10.61 kcal Total: -61.18 2.35 -58.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134638076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.772 kcal (2) G-P(sol) polarization free energy of solvation -61.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds