Wall clock time and date at job start Tue Mar 31 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21554 * 120.00107 * 0.02562 * 9 8 5 11 11 C 1.47883 * 119.99955 * 180.02562 * 9 8 5 12 12 N 1.32455 * 119.74989 * 359.72668 * 11 9 8 13 13 C 1.31760 * 121.98450 * 179.74823 * 12 11 9 14 14 C 1.37681 * 121.48905 * 0.51129 * 13 12 11 15 15 C 1.41117 * 119.38971 * 359.76627 * 14 13 12 16 16 C 1.44977 * 130.46811 * 179.97438 * 15 14 13 17 17 C 1.32003 * 114.85183 * 180.02562 * 16 15 14 18 18 S 1.75347 * 111.45160 * 0.02562 * 17 16 15 19 19 C 1.40255 * 117.63419 * 359.97438 * 15 14 13 20 20 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 21 21 C 1.36940 * 119.99786 * 274.99596 * 20 2 1 22 22 H 1.07997 * 119.99662 * 359.97438 * 21 20 2 23 23 C 1.38810 * 119.99761 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47040 * 90.00051 * 25 23 21 27 27 H 1.48503 * 109.47262 * 210.00172 * 25 23 21 28 28 H 1.48500 * 109.47367 * 330.00364 * 25 23 21 29 29 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 30 30 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 35 35 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 36 36 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 37 37 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 38 38 H 1.07995 * 119.25927 * 180.29769 * 13 12 11 39 39 H 1.08003 * 120.30619 * 179.73753 * 14 13 12 40 40 H 1.08005 * 122.57467 * 359.97438 * 16 15 14 41 41 H 1.07991 * 124.27567 * 179.97438 * 17 16 15 42 42 H 0.97003 * 120.00154 * 95.00403 * 20 2 1 43 43 H 0.97002 * 119.99909 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9377 0.4319 -0.5728 11 6 5.5478 2.6294 -1.2666 12 7 4.7000 3.4754 -1.8321 13 6 4.9967 4.7468 -2.0096 14 6 6.2138 5.2619 -1.6237 15 6 7.1652 4.4124 -1.0198 16 6 8.5000 4.6934 -0.5286 17 6 9.1316 3.6551 -0.0135 18 16 8.1445 2.2073 -0.0783 19 6 6.8147 3.0662 -0.8410 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6122 -0.6618 3.5090 24 7 2.9261 -1.9386 3.4497 25 14 2.7913 0.2702 5.1179 26 1 1.5238 0.1792 5.8865 27 1 3.8962 -0.3229 5.9133 28 1 3.0961 1.6954 4.8332 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.8001 -2.4820 -2.3595 35 1 3.6546 -1.0595 -3.4193 36 1 5.1715 -1.3620 -2.5381 37 1 3.3286 1.4128 -1.9028 38 1 4.2702 5.3989 -2.4713 39 1 6.4386 6.3063 -1.7822 40 1 8.9438 5.6767 -0.5809 41 1 10.1304 3.6923 0.3954 42 1 2.2490 -1.6319 1.1526 43 1 3.2500 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134653505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:31 Heat of formation + Delta-G solvation = 27.650418 kcal Electronic energy + Delta-G solvation = -26293.145059 eV Core-core repulsion = 22657.954686 eV Total energy + Delta-G solvation = -3635.190372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68141 -39.12716 -36.78948 -36.14612 -34.42311 -32.25403 -31.73754 -30.48362 -30.26822 -28.52828 -26.27507 -24.89635 -24.45808 -23.54111 -21.86566 -21.05567 -20.21507 -19.63748 -18.37726 -17.50444 -17.03017 -16.69583 -15.75585 -15.22084 -15.14180 -14.87665 -14.65735 -14.31284 -14.07444 -13.87734 -13.79458 -13.48021 -12.92526 -12.80512 -12.66235 -12.27452 -12.11840 -12.07174 -11.87751 -11.67477 -11.53945 -11.01342 -10.86351 -10.78452 -10.55001 -10.37854 -10.16976 -10.10113 -9.96473 -9.83115 -9.60527 -9.55028 -9.29604 -8.81464 -8.69229 -7.90078 -6.85220 -5.66835 -2.94233 0.25150 0.66810 1.39304 1.94850 1.97614 2.93281 3.29439 3.49175 3.54489 3.56036 3.79319 4.13462 4.25813 4.53547 4.67805 4.70543 4.98720 5.14682 5.19658 5.24394 5.31779 5.46669 5.55351 5.56845 5.67969 5.75204 5.82800 5.95260 5.99980 6.02639 6.08739 6.20644 6.27579 6.36004 6.40855 6.49982 6.63573 6.75502 6.86812 6.98587 7.14753 7.51018 7.79090 7.87308 8.46565 8.51915 9.63146 10.20707 10.55253 11.56002 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.004259 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.774124 B = 6573.423363 C = 7735.444374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.130 4.130 5 C 0.141 3.859 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.690 5.690 9 C 0.565 3.435 10 O -0.518 6.518 11 C 0.141 3.859 12 N -0.444 5.444 13 C 0.080 3.920 14 C -0.113 4.113 15 C -0.046 4.046 16 C -0.134 4.134 17 C -0.204 4.204 18 S 0.203 5.797 19 C -0.166 4.166 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.405 0.595 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.171 0.829 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 13.093 -15.263 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.340 5.340 9 C 0.349 3.651 10 O -0.394 6.394 11 C -0.009 4.009 12 N -0.156 5.156 13 C -0.074 4.074 14 C -0.135 4.135 15 C -0.062 4.062 16 C -0.165 4.165 17 C -0.340 4.340 18 S 0.468 5.532 19 C -0.286 4.286 20 N -0.362 5.362 21 C -0.363 4.363 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.732 3.268 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.241 0.759 38 H 0.183 0.817 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.217 0.783 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.392 10.839 -14.550 19.990 hybrid contribution 0.372 2.472 0.664 2.587 sum 8.764 13.311 -13.886 21.138 Atomic orbital electron populations 1.22445 0.99502 1.00742 0.99776 1.20237 0.91596 0.95642 0.86494 0.93531 1.22163 0.93525 1.02245 0.98955 1.21131 0.95374 0.79683 1.00038 0.87436 1.22182 1.01518 1.00193 0.97999 1.45758 1.15712 1.11865 1.60679 1.17660 0.83045 0.85432 0.78984 1.90800 1.51189 1.54346 1.43054 1.20758 0.88695 0.94733 0.96717 1.67579 1.32294 1.04263 1.11473 1.22464 0.95448 0.91282 0.98224 1.22081 0.93442 1.00407 0.97559 1.19499 0.95094 0.91992 0.99643 1.20736 0.92606 1.00481 1.02631 1.25813 1.04994 0.98722 1.04438 1.85241 1.02283 1.06483 1.59189 1.23703 1.00368 0.98375 1.06128 1.42396 1.77991 1.10539 1.05266 1.19157 1.36189 0.93633 0.87348 0.91596 1.24667 1.02299 0.95938 0.97850 1.69645 1.51075 1.08609 1.28677 0.86282 0.77210 0.78895 0.84401 1.21872 1.21792 1.20964 0.94675 0.93552 0.92956 0.91919 0.90491 0.91565 0.93038 0.92506 0.75919 0.81657 0.83970 0.83537 0.81153 0.78345 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.49 37.16 0.35 -2.62 16 2 C 0.17 3.35 2.84 -67.93 -0.19 3.16 16 3 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 4 C -0.13 -2.06 4.29 -26.73 -0.11 -2.18 16 5 C 0.14 2.39 2.52 -67.93 -0.17 2.22 16 6 H 0.11 2.33 7.05 -51.93 -0.37 1.96 16 7 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 8 N -0.69 -11.29 4.44 -54.74 -0.24 -11.54 16 9 C 0.57 10.36 7.77 -12.31 -0.10 10.26 16 10 O -0.52 -10.95 14.69 5.32 0.08 -10.88 16 11 C 0.14 2.29 6.78 -82.76 -0.56 1.72 16 12 N -0.44 -6.17 9.51 -9.78 -0.09 -6.26 16 13 C 0.08 0.85 11.12 -17.79 -0.20 0.65 16 14 C -0.11 -1.11 10.18 -38.69 -0.39 -1.50 16 15 C -0.05 -0.56 6.09 -105.38 -0.64 -1.21 16 16 C -0.13 -1.34 10.39 -38.83 -0.40 -1.74 16 17 C -0.20 -2.10 11.02 28.82 0.32 -1.78 16 18 S 0.20 2.90 21.43 -107.50 -2.30 0.60 16 19 C -0.17 -2.53 6.33 -37.93 -0.24 -2.77 16 20 N -0.72 -18.05 4.49 -53.42 -0.24 -18.29 16 21 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 25 Si 0.90 23.35 29.55 -169.99 -5.02 18.32 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 28 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.41 5.86 7.93 -40.82 -0.32 5.53 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -34.12 376.07 -9.69 -43.81 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.02 Total: 11.51 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.23 Total: -4.88 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.15 Total: -64.15 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.30 Total: 0.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.12 -9.69 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.460 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds