Wall clock time and date at job start Tue Mar 31 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21554 * 120.00107 * 0.02562 * 9 8 5 11 11 C 1.47883 * 119.99955 * 180.02562 * 9 8 5 12 12 N 1.32455 * 119.74989 * 359.72668 * 11 9 8 13 13 C 1.31760 * 121.98450 * 179.74823 * 12 11 9 14 14 C 1.37681 * 121.48905 * 0.51129 * 13 12 11 15 15 C 1.41117 * 119.38971 * 359.76627 * 14 13 12 16 16 C 1.44977 * 130.46811 * 179.97438 * 15 14 13 17 17 C 1.32003 * 114.85183 * 180.02562 * 16 15 14 18 18 S 1.75347 * 111.45160 * 0.02562 * 17 16 15 19 19 C 1.40255 * 117.63419 * 359.97438 * 15 14 13 20 20 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 21 21 C 1.36940 * 119.99786 * 274.99596 * 20 2 1 22 22 H 1.07997 * 119.99662 * 359.97438 * 21 20 2 23 23 C 1.38810 * 119.99761 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47040 * 90.00051 * 25 23 21 27 27 H 1.48503 * 109.47262 * 210.00172 * 25 23 21 28 28 H 1.48500 * 109.47367 * 330.00364 * 25 23 21 29 29 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 30 30 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 32 32 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 33 33 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 34 34 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 35 35 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 36 36 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 37 37 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 38 38 H 1.07995 * 119.25927 * 180.29769 * 13 12 11 39 39 H 1.08003 * 120.30619 * 179.73753 * 14 13 12 40 40 H 1.08005 * 122.57467 * 359.97438 * 16 15 14 41 41 H 1.07991 * 124.27567 * 179.97438 * 17 16 15 42 42 H 0.97003 * 120.00154 * 95.00403 * 20 2 1 43 43 H 0.97002 * 119.99909 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9377 0.4319 -0.5728 11 6 5.5478 2.6294 -1.2666 12 7 4.7000 3.4754 -1.8321 13 6 4.9967 4.7468 -2.0096 14 6 6.2138 5.2619 -1.6237 15 6 7.1652 4.4124 -1.0198 16 6 8.5000 4.6934 -0.5286 17 6 9.1316 3.6551 -0.0135 18 16 8.1445 2.2073 -0.0783 19 6 6.8147 3.0662 -0.8410 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8927 1.0405 2.4241 23 6 2.6122 -0.6618 3.5090 24 7 2.9261 -1.9386 3.4497 25 14 2.7913 0.2702 5.1179 26 1 1.5238 0.1792 5.8865 27 1 3.8962 -0.3229 5.9133 28 1 3.0961 1.6954 4.8332 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.8001 -2.4820 -2.3595 35 1 3.6546 -1.0595 -3.4193 36 1 5.1715 -1.3620 -2.5381 37 1 3.3286 1.4128 -1.9028 38 1 4.2702 5.3989 -2.4713 39 1 6.4386 6.3063 -1.7822 40 1 8.9438 5.6767 -0.5809 41 1 10.1304 3.6923 0.3954 42 1 2.2490 -1.6319 1.1526 43 1 3.2500 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134653505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:30 Heat of formation + Delta-G solvation = 4.265568 kcal Electronic energy + Delta-G solvation = -26294.159102 eV Core-core repulsion = 22657.954686 eV Total energy + Delta-G solvation = -3636.204416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73363 -40.37281 -38.33055 -37.03642 -36.09978 -34.05614 -32.96512 -31.60107 -31.35158 -30.41286 -27.62175 -26.01823 -25.62682 -25.34647 -22.95272 -22.18820 -21.51613 -21.18771 -19.50202 -19.20372 -18.46394 -17.67382 -17.10139 -16.67641 -16.37319 -16.09717 -15.76216 -15.65466 -15.51165 -15.23697 -15.06921 -14.83677 -14.51480 -14.24551 -13.63391 -13.60918 -13.40041 -13.22543 -13.15753 -12.98265 -12.87288 -12.80565 -12.69640 -12.28442 -12.22952 -11.87380 -11.85050 -11.57574 -11.44460 -11.18432 -10.93276 -10.92148 -10.77492 -10.20918 -10.06068 -8.95852 -8.91538 -7.93211 -5.18380 -0.68839 -0.29061 0.41472 1.05955 1.11983 1.39338 1.41973 1.48966 1.79190 2.08194 2.54276 2.73421 3.10911 3.40787 3.46713 3.63137 3.75378 3.80967 4.00201 4.09977 4.20935 4.33939 4.38824 4.43623 4.52609 4.56229 4.67626 4.77483 4.79637 4.82305 4.92226 5.00314 5.02893 5.09284 5.20241 5.25169 5.32619 5.39880 5.47262 5.49017 5.59381 5.63177 6.30146 6.40405 6.72725 7.17471 7.35844 8.15681 8.36452 9.30491 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.004259 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.774124 B = 6573.423363 C = 7735.444374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.036 0.964 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.051 0.949 7 C -0.150 4.150 8 N -0.682 5.682 9 C 0.554 3.446 10 O -0.562 6.562 11 C 0.102 3.898 12 N -0.452 5.452 13 C 0.075 3.925 14 C -0.088 4.088 15 C -0.059 4.059 16 C -0.123 4.123 17 C -0.191 4.191 18 S 0.109 5.891 19 C -0.185 4.185 20 N -0.730 5.730 21 C -0.227 4.227 22 H 0.065 0.935 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.959 3.041 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.278 1.278 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.029 0.971 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.415 0.585 38 H 0.209 0.791 39 H 0.193 0.807 40 H 0.192 0.808 41 H 0.203 0.797 42 H 0.371 0.629 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.785 17.065 -17.356 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.054 0.946 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.069 0.931 7 C -0.208 4.208 8 N -0.332 5.332 9 C 0.339 3.661 10 O -0.441 6.441 11 C -0.046 4.046 12 N -0.164 5.164 13 C -0.081 4.081 14 C -0.109 4.109 15 C -0.075 4.075 16 C -0.152 4.152 17 C -0.326 4.326 18 S 0.373 5.627 19 C -0.304 4.304 20 N -0.371 5.371 21 C -0.359 4.359 22 H 0.083 0.917 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.789 3.211 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.203 1.203 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.253 0.747 38 H 0.226 0.774 39 H 0.210 0.790 40 H 0.209 0.791 41 H 0.220 0.780 42 H 0.203 0.797 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.779 14.854 -16.688 23.657 hybrid contribution 0.532 1.445 1.186 1.944 sum 8.312 16.299 -15.502 23.981 Atomic orbital electron populations 1.22285 0.97456 1.00999 1.00683 1.20499 0.92838 0.94977 0.86124 0.94627 1.22077 0.92454 1.02480 0.98509 1.20965 0.95979 0.80343 0.98717 0.93092 1.22076 1.00355 1.00405 0.97953 1.45686 1.15456 1.11800 1.60268 1.18197 0.82995 0.86617 0.78296 1.90768 1.52445 1.55930 1.44981 1.20413 0.90097 0.93981 1.00092 1.67534 1.32053 1.05633 1.11207 1.23296 0.96880 0.90371 0.97577 1.22680 0.91885 1.02202 0.94104 1.20076 0.96670 0.90938 0.99803 1.21182 0.91296 1.01985 1.00731 1.26019 1.05622 0.96124 1.04843 1.85472 1.04984 1.10980 1.61304 1.23855 0.99954 0.99858 1.06742 1.42575 1.78262 1.10093 1.06167 1.19457 1.34235 0.93619 0.88581 0.91724 1.25400 1.03430 0.96869 1.01061 1.69794 1.52946 1.10014 1.29041 0.85344 0.77074 0.77848 0.80830 1.20926 1.22405 1.20308 0.90542 0.93608 0.95212 0.87654 0.89978 0.90605 0.90067 0.94386 0.74725 0.77414 0.78966 0.79085 0.77960 0.79703 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.49 71.98 0.68 -4.64 16 2 C 0.16 6.40 2.84 44.99 0.13 6.53 16 3 H 0.04 1.47 7.56 -2.39 -0.02 1.46 16 4 C -0.12 -3.58 4.29 30.60 0.13 -3.45 16 5 C 0.14 5.03 2.52 44.99 0.11 5.14 16 6 H 0.05 2.39 7.05 -2.39 -0.02 2.37 16 7 C -0.15 -4.27 9.48 71.98 0.68 -3.58 16 8 N -0.68 -23.02 4.44 -445.36 -1.98 -25.00 16 9 C 0.55 21.71 7.77 86.80 0.67 22.38 16 10 O -0.56 -26.23 14.69 -3.88 -0.06 -26.29 16 11 C 0.10 3.42 6.78 42.18 0.29 3.71 16 12 N -0.45 -12.04 9.51 -184.87 -1.76 -13.80 16 13 C 0.07 1.31 11.12 84.57 0.94 2.25 16 14 C -0.09 -1.33 10.18 22.84 0.23 -1.09 16 15 C -0.06 -1.29 6.09 -20.36 -0.12 -1.42 16 16 C -0.12 -2.05 10.39 23.09 0.24 -1.81 16 17 C -0.19 -3.68 11.02 66.91 0.74 -2.94 16 18 S 0.11 3.35 21.43 -56.49 -1.21 2.14 16 19 C -0.18 -5.74 6.33 23.34 0.15 -5.59 16 20 N -0.73 -37.84 4.49 -322.93 -1.45 -39.29 16 21 C -0.23 -13.25 9.93 84.03 0.83 -12.42 16 22 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 24 N -0.97 -62.25 13.06 21.65 0.28 -61.97 16 25 Si 0.96 49.39 29.55 68.60 2.03 51.41 16 26 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 28 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.42 11.88 7.93 -92.71 -0.73 11.14 16 38 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.20 2.41 8.06 -2.92 -0.02 2.38 16 42 H 0.37 20.75 7.80 -92.71 -0.72 20.03 16 43 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -82.18 376.07 1.62 -80.56 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.41 Total: 33.29 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 6.17 Total: -1.06 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -4.90 Total: -140.05 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.03 Total: 51.41 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.21 Total: 2.14 kcal Total: -82.18 1.62 -80.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.828 kcal (2) G-P(sol) polarization free energy of solvation -82.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds