Wall clock time and date at job start Tue Mar 31 2020 18:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.34777 * 119.99828 * 204.72115 * 8 5 4 10 10 O 1.21553 * 119.99924 * 0.28083 * 9 8 5 11 11 C 1.47873 * 120.00239 * 180.27771 * 9 8 5 12 12 N 1.32466 * 119.75008 * 359.73173 * 11 9 8 13 13 C 1.31764 * 121.98410 * 179.75302 * 12 11 9 14 14 C 1.37674 * 121.48718 * 0.50078 * 13 12 11 15 15 C 1.41109 * 119.39662 * 359.76937 * 14 13 12 16 16 C 1.44980 * 130.46853 * 179.97438 * 15 14 13 17 17 C 1.32005 * 114.84506 * 180.02562 * 16 15 14 18 18 S 1.75349 * 111.45716 * 0.02562 * 17 16 15 19 19 C 1.40261 * 117.63057 * 359.97438 * 15 14 13 20 20 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 21 21 C 1.36942 * 119.99930 * 275.00349 * 20 2 1 22 22 H 1.07997 * 119.99996 * 359.97438 * 21 20 2 23 23 C 1.38811 * 119.99791 * 180.02562 * 21 20 2 24 24 N 1.31618 * 120.00348 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99842 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47553 * 89.99682 * 25 23 21 27 27 H 1.48496 * 109.46928 * 209.99962 * 25 23 21 28 28 H 1.48501 * 109.46922 * 329.99403 * 25 23 21 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 32 32 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 33 33 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 34 34 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 35 35 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 1.07991 * 119.25319 * 180.29590 * 13 12 11 39 39 H 1.08002 * 120.30092 * 179.74190 * 14 13 12 40 40 H 1.08000 * 122.57685 * 0.02562 * 16 15 14 41 41 H 1.07998 * 124.27346 * 179.97438 * 17 16 15 42 42 H 0.96999 * 120.00303 * 94.99255 * 20 2 1 43 43 H 0.97002 * 120.00067 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3771 -0.9947 0.2696 10 8 5.9898 -0.0870 -0.2580 11 6 5.9741 -1.7263 1.4075 12 7 5.2999 -2.7111 1.9822 13 6 5.7914 -3.3952 2.9954 14 6 7.0336 -3.1135 3.5181 15 6 7.8020 -2.0724 2.9552 16 6 9.1180 -1.5773 3.3087 17 6 9.5511 -0.5749 2.5670 18 16 8.3768 -0.1277 1.3440 19 6 7.2510 -1.3682 1.8746 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3757 22 1 1.8926 1.0404 2.4242 23 6 2.6125 -0.6618 3.5089 24 7 2.9256 -1.9388 3.4497 25 14 2.7915 0.2701 5.1179 26 1 1.5242 0.1790 5.8865 27 1 3.8965 -0.3230 5.9130 28 1 3.0963 1.6954 4.8331 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.6263 -0.6885 -3.4659 35 1 5.1507 -1.1476 -2.6703 36 1 3.7722 -2.2739 -2.6701 37 1 3.6648 -2.0584 0.2384 38 1 5.2054 -4.1926 3.4277 39 1 7.4161 -3.6838 4.3517 40 1 9.6993 -1.9964 4.1167 41 1 10.5076 -0.0907 2.6974 42 1 2.2491 -1.6318 1.1525 43 1 3.2490 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134653506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:35 Heat of formation + Delta-G solvation = 39.393813 kcal Electronic energy + Delta-G solvation = -27435.169992 eV Core-core repulsion = 23800.488851 eV Total energy + Delta-G solvation = -3634.681141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.11914 -38.79763 -36.71924 -35.63260 -34.11923 -32.21342 -31.36084 -30.10440 -29.90467 -28.42953 -26.29558 -24.38504 -23.92775 -23.56293 -21.45851 -20.74672 -20.15308 -19.54454 -17.86378 -17.09735 -16.84469 -16.21748 -15.62017 -14.76996 -14.71706 -14.62855 -14.36958 -13.90673 -13.80478 -13.72942 -13.57203 -13.25358 -12.81168 -12.62533 -12.28672 -12.09503 -11.93388 -11.71107 -11.66181 -11.61218 -11.50242 -10.95452 -10.81850 -10.67531 -10.54117 -10.32718 -10.20541 -9.84317 -9.60416 -9.51077 -9.42557 -8.99921 -8.88728 -8.75881 -8.33061 -7.45841 -6.82928 -5.66436 -2.92191 0.81832 1.22078 1.79719 2.32015 2.46135 3.40235 3.44484 3.50066 3.52690 3.75111 4.42061 4.64184 4.67901 4.81311 5.04316 5.14812 5.24949 5.41624 5.46525 5.56591 5.64433 5.72356 5.74152 5.77536 5.80249 5.94063 5.99193 6.03075 6.06534 6.19090 6.29279 6.31553 6.40696 6.45762 6.48767 6.60436 6.66916 6.90875 6.93244 7.10584 7.20884 7.78563 8.14215 8.44643 8.49369 8.88557 9.60438 10.15543 10.51256 11.51672 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.005993 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.886860 B = 4671.038108 C = 6244.793015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.671 5.671 9 C 0.578 3.422 10 O -0.553 6.553 11 C 0.136 3.864 12 N -0.377 5.377 13 C 0.105 3.895 14 C -0.126 4.126 15 C -0.056 4.056 16 C -0.127 4.127 17 C -0.213 4.213 18 S 0.167 5.833 19 C -0.161 4.161 20 N -0.714 5.714 21 C -0.233 4.233 22 H 0.063 0.937 23 C -0.004 4.004 24 N -0.902 5.902 25 Si 0.888 3.112 26 H -0.293 1.293 27 H -0.295 1.295 28 H -0.286 1.286 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.416 0.584 38 H 0.161 0.839 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.381 0.619 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -3.144 -5.945 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.172 4.172 5 C 0.043 3.957 6 H 0.102 0.898 7 C -0.221 4.221 8 N -0.323 5.323 9 C 0.363 3.637 10 O -0.432 6.432 11 C -0.015 4.015 12 N -0.088 5.088 13 C -0.050 4.050 14 C -0.148 4.148 15 C -0.072 4.072 16 C -0.158 4.158 17 C -0.349 4.349 18 S 0.430 5.570 19 C -0.281 4.281 20 N -0.358 5.358 21 C -0.364 4.364 22 H 0.081 0.919 23 C -0.202 4.202 24 N -0.550 5.550 25 Si 0.720 3.280 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.212 1.212 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.216 0.784 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.072 -1.517 -7.610 11.197 hybrid contribution 0.654 -0.890 3.094 3.285 sum 8.726 -2.408 -4.516 10.117 Atomic orbital electron populations 1.22421 0.99404 1.00663 0.99802 1.20275 0.91680 0.95675 0.86507 0.93588 1.22210 0.93786 1.01727 0.99450 1.20875 0.92702 0.97304 0.84857 0.89798 1.22206 1.01780 1.00904 0.97161 1.45782 1.16770 1.37092 1.32650 1.17601 0.81919 0.82508 0.81641 1.90681 1.62462 1.30840 1.59234 1.20602 0.88809 0.95567 0.96495 1.67696 1.29835 1.03235 1.08003 1.22398 0.91889 0.98075 0.92630 1.22058 0.95667 0.96810 1.00287 1.19380 0.94712 0.97325 0.95743 1.20730 0.94463 0.98571 1.02061 1.25609 1.04842 1.02226 1.02173 1.84745 1.05811 1.33873 1.32590 1.23596 1.00181 1.02482 1.01794 1.42452 1.77754 1.10327 1.05220 1.19078 1.36457 0.93600 0.87278 0.91881 1.24565 1.02449 0.96025 0.97115 1.69681 1.49838 1.07712 1.27725 0.86475 0.77027 0.79233 0.85225 1.22053 1.22141 1.21182 0.93626 0.92943 0.94702 0.90789 0.91667 0.92049 0.92380 0.92732 0.74392 0.82191 0.84799 0.84073 0.81777 0.78354 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.20 2.89 -67.93 -0.20 3.00 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -2.04 4.43 -26.73 -0.12 -2.16 16 5 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 6 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 8 N -0.67 -12.82 3.79 -54.74 -0.21 -13.03 16 9 C 0.58 12.21 7.77 -12.32 -0.10 12.11 16 10 O -0.55 -12.22 14.69 5.32 0.08 -12.14 16 11 C 0.14 2.82 6.78 -82.76 -0.56 2.26 16 12 N -0.38 -7.59 8.52 -9.79 -0.08 -7.67 16 13 C 0.10 1.83 11.10 -17.79 -0.20 1.64 16 14 C -0.13 -1.97 10.18 -38.70 -0.39 -2.36 16 15 C -0.06 -0.95 6.09 -105.38 -0.64 -1.59 16 16 C -0.13 -1.76 10.39 -38.83 -0.40 -2.16 16 17 C -0.21 -2.83 11.02 28.82 0.32 -2.51 16 18 S 0.17 2.79 21.43 -107.50 -2.30 0.49 16 19 C -0.16 -3.10 6.33 -37.93 -0.24 -3.34 16 20 N -0.71 -16.39 3.84 -53.43 -0.21 -16.60 16 21 C -0.23 -6.17 9.93 -15.06 -0.15 -6.32 16 22 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 24 N -0.90 -23.90 12.05 55.49 0.67 -23.23 16 25 Si 0.89 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.42 8.28 5.83 -40.82 -0.24 8.04 16 38 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.38 9.03 5.70 -40.82 -0.23 8.80 16 43 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -29.79 369.85 -9.65 -39.44 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.90 Total: 13.57 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.25 Total: -3.75 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.17 Total: -60.53 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.30 Total: 0.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.79 -9.65 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.833 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds