Wall clock time and date at job start Tue Mar 31 2020 18:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.34777 * 119.99828 * 204.72115 * 8 5 4 10 10 O 1.21553 * 119.99924 * 0.28083 * 9 8 5 11 11 C 1.47873 * 120.00239 * 180.27771 * 9 8 5 12 12 N 1.32466 * 119.75008 * 359.73173 * 11 9 8 13 13 C 1.31764 * 121.98410 * 179.75302 * 12 11 9 14 14 C 1.37674 * 121.48718 * 0.50078 * 13 12 11 15 15 C 1.41109 * 119.39662 * 359.76937 * 14 13 12 16 16 C 1.44980 * 130.46853 * 179.97438 * 15 14 13 17 17 C 1.32005 * 114.84506 * 180.02562 * 16 15 14 18 18 S 1.75349 * 111.45716 * 0.02562 * 17 16 15 19 19 C 1.40261 * 117.63057 * 359.97438 * 15 14 13 20 20 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 21 21 C 1.36942 * 119.99930 * 275.00349 * 20 2 1 22 22 H 1.07997 * 119.99996 * 359.97438 * 21 20 2 23 23 C 1.38811 * 119.99791 * 180.02562 * 21 20 2 24 24 N 1.31618 * 120.00348 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99842 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47553 * 89.99682 * 25 23 21 27 27 H 1.48496 * 109.46928 * 209.99962 * 25 23 21 28 28 H 1.48501 * 109.46922 * 329.99403 * 25 23 21 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 32 32 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 33 33 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 34 34 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 35 35 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 1.07991 * 119.25319 * 180.29590 * 13 12 11 39 39 H 1.08002 * 120.30092 * 179.74190 * 14 13 12 40 40 H 1.08000 * 122.57685 * 0.02562 * 16 15 14 41 41 H 1.07998 * 124.27346 * 179.97438 * 17 16 15 42 42 H 0.96999 * 120.00303 * 94.99255 * 20 2 1 43 43 H 0.97002 * 120.00067 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3771 -0.9947 0.2696 10 8 5.9898 -0.0870 -0.2580 11 6 5.9741 -1.7263 1.4075 12 7 5.2999 -2.7111 1.9822 13 6 5.7914 -3.3952 2.9954 14 6 7.0336 -3.1135 3.5181 15 6 7.8020 -2.0724 2.9552 16 6 9.1180 -1.5773 3.3087 17 6 9.5511 -0.5749 2.5670 18 16 8.3768 -0.1277 1.3440 19 6 7.2510 -1.3682 1.8746 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3757 22 1 1.8926 1.0404 2.4242 23 6 2.6125 -0.6618 3.5089 24 7 2.9256 -1.9388 3.4497 25 14 2.7915 0.2701 5.1179 26 1 1.5242 0.1790 5.8865 27 1 3.8965 -0.3230 5.9130 28 1 3.0963 1.6954 4.8331 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.6263 -0.6885 -3.4659 35 1 5.1507 -1.1476 -2.6703 36 1 3.7722 -2.2739 -2.6701 37 1 3.6648 -2.0584 0.2384 38 1 5.2054 -4.1926 3.4277 39 1 7.4161 -3.6838 4.3517 40 1 9.6993 -1.9964 4.1167 41 1 10.5076 -0.0907 2.6974 42 1 2.2491 -1.6318 1.1525 43 1 3.2490 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134653506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:34 Heat of formation + Delta-G solvation = 22.050762 kcal Electronic energy + Delta-G solvation = -27435.922043 eV Core-core repulsion = 23800.488851 eV Total energy + Delta-G solvation = -3635.433192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.50643 -40.22236 -38.25867 -36.86042 -35.75477 -33.96662 -32.80078 -31.54172 -31.16447 -30.12564 -27.59302 -25.75872 -25.49268 -25.18321 -22.79259 -22.00018 -21.65130 -21.01360 -19.17602 -19.02596 -18.24735 -17.54044 -17.04848 -16.56774 -16.18679 -15.99274 -15.62215 -15.56295 -15.35858 -15.02851 -14.96228 -14.73753 -14.26342 -14.11684 -13.57220 -13.48176 -13.30572 -13.22408 -12.95816 -12.89754 -12.78333 -12.75406 -12.61532 -12.28306 -12.15113 -11.80202 -11.71229 -11.53961 -11.38543 -10.98966 -10.82073 -10.75095 -10.40104 -10.02833 -9.84467 -8.76823 -8.69870 -7.71223 -4.94713 -0.45192 -0.12000 0.53916 1.13771 1.27456 1.39907 1.42729 1.46871 1.95214 2.34596 2.61179 3.00776 3.38359 3.56198 3.59027 3.79398 3.84816 3.95942 4.08952 4.19170 4.35895 4.39300 4.49820 4.56740 4.58022 4.62575 4.71069 4.84682 4.87085 4.88430 4.93192 5.07931 5.11267 5.14911 5.17580 5.33541 5.36846 5.43735 5.63475 5.65376 5.66307 5.76904 6.45762 6.63724 7.04476 7.35490 7.54908 8.27838 8.55182 9.45224 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.005993 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.886860 B = 4671.038108 C = 6244.793015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.119 4.119 5 C 0.142 3.858 6 H 0.059 0.941 7 C -0.150 4.150 8 N -0.668 5.668 9 C 0.566 3.434 10 O -0.576 6.576 11 C 0.102 3.898 12 N -0.398 5.398 13 C 0.083 3.917 14 C -0.108 4.108 15 C -0.068 4.068 16 C -0.127 4.127 17 C -0.193 4.193 18 S 0.122 5.878 19 C -0.188 4.188 20 N -0.717 5.717 21 C -0.241 4.241 22 H 0.046 0.954 23 C -0.040 4.040 24 N -0.903 5.903 25 Si 0.926 3.074 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.296 1.296 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.412 0.588 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.206 0.794 42 H 0.377 0.623 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 -4.077 -5.836 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.043 0.957 4 C -0.157 4.157 5 C 0.038 3.962 6 H 0.077 0.923 7 C -0.209 4.209 8 N -0.318 5.318 9 C 0.352 3.648 10 O -0.457 6.457 11 C -0.048 4.048 12 N -0.109 5.109 13 C -0.072 4.072 14 C -0.130 4.130 15 C -0.084 4.084 16 C -0.156 4.156 17 C -0.328 4.328 18 S 0.384 5.616 19 C -0.307 4.307 20 N -0.361 5.361 21 C -0.374 4.374 22 H 0.065 0.935 23 C -0.236 4.236 24 N -0.550 5.550 25 Si 0.759 3.241 26 H -0.220 1.220 27 H -0.226 1.226 28 H -0.223 1.223 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.251 0.749 38 H 0.194 0.806 39 H 0.195 0.805 40 H 0.201 0.799 41 H 0.223 0.777 42 H 0.211 0.789 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.002 -2.447 -7.530 11.989 hybrid contribution 0.428 -0.592 3.082 3.168 sum 9.431 -3.039 -4.447 10.861 Atomic orbital electron populations 1.22260 0.97682 1.00943 1.00288 1.20479 0.92791 0.94742 0.86715 0.95656 1.22126 0.92626 1.02084 0.98862 1.21055 0.93616 0.95998 0.85501 0.92290 1.22099 1.00647 1.01824 0.96282 1.45867 1.16184 1.36759 1.33007 1.17922 0.82420 0.82498 0.81981 1.90643 1.63138 1.31827 1.60123 1.20636 0.90046 0.96740 0.97375 1.67603 1.30626 1.03574 1.09075 1.22820 0.93223 0.98590 0.92609 1.22499 0.94433 0.95832 1.00188 1.19957 0.96168 0.97263 0.95010 1.21096 0.93182 0.98365 1.02964 1.25966 1.05073 1.01817 0.99929 1.84808 1.07318 1.34385 1.35066 1.23878 1.00268 1.03558 1.02971 1.42452 1.78147 1.10013 1.05466 1.19092 1.36366 0.93076 0.88828 0.93544 1.24947 1.03309 0.96856 0.98496 1.69742 1.50147 1.07617 1.27539 0.85886 0.76578 0.77931 0.83669 1.22002 1.22577 1.22260 0.93359 0.95397 0.91257 0.87051 0.90697 0.89146 0.94213 0.91491 0.74919 0.80645 0.80499 0.79904 0.77699 0.78853 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.49 71.98 0.68 -4.43 16 2 C 0.16 6.09 2.89 44.99 0.13 6.22 16 3 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 4 C -0.12 -3.46 4.43 30.60 0.14 -3.32 16 5 C 0.14 4.72 2.57 44.99 0.12 4.83 16 6 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 7 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 8 N -0.67 -26.35 3.79 -445.38 -1.69 -28.04 16 9 C 0.57 25.06 7.77 86.79 0.67 25.74 16 10 O -0.58 -26.88 14.69 -3.88 -0.06 -26.94 16 11 C 0.10 4.37 6.78 42.18 0.29 4.66 16 12 N -0.40 -16.38 8.52 -184.88 -1.58 -17.96 16 13 C 0.08 2.86 11.10 84.57 0.94 3.80 16 14 C -0.11 -3.15 10.18 22.84 0.23 -2.92 16 15 C -0.07 -2.19 6.09 -20.36 -0.12 -2.32 16 16 C -0.13 -3.06 10.39 23.09 0.24 -2.82 16 17 C -0.19 -4.60 11.02 66.91 0.74 -3.86 16 18 S 0.12 4.12 21.43 -56.49 -1.21 2.90 16 19 C -0.19 -7.31 6.33 23.34 0.15 -7.16 16 20 N -0.72 -33.57 3.84 -322.94 -1.24 -34.81 16 21 C -0.24 -13.13 9.93 84.03 0.83 -12.30 16 22 H 0.05 2.63 7.83 -2.91 -0.02 2.61 16 23 C -0.04 -2.18 5.50 84.86 0.47 -1.71 16 24 N -0.90 -48.35 12.05 21.65 0.26 -48.09 16 25 Si 0.93 46.65 29.55 68.60 2.03 48.68 16 26 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 27 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 28 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 16.88 5.83 -92.71 -0.54 16.34 16 38 H 0.18 5.27 8.06 -2.92 -0.02 5.25 16 39 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.21 3.11 8.06 -2.91 -0.02 3.08 16 42 H 0.38 18.18 5.70 -92.71 -0.53 17.65 16 43 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -68.30 369.85 2.67 -65.64 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.03 Total: 37.49 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.18 Total: 1.13 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -4.24 Total: -128.90 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.06 Total: -26.94 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.21 Total: 2.90 kcal Total: -68.30 2.67 -65.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.687 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds