Wall clock time and date at job start Tue Mar 31 2020 18:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.53001 * 109.47035 * 185.00124 * 5 4 2 8 8 N 1.46501 * 109.47107 * 65.00275 * 5 4 2 9 9 C 1.34770 * 119.99608 * 205.00170 * 8 5 4 10 10 O 1.21557 * 120.00450 * 359.97438 * 9 8 5 11 11 C 1.47883 * 119.99788 * 179.97438 * 9 8 5 12 12 N 1.32464 * 119.75145 * 359.73235 * 11 9 8 13 13 C 1.31757 * 121.98172 * 179.75241 * 12 11 9 14 14 C 1.37678 * 121.49181 * 0.49558 * 13 12 11 15 15 C 1.41111 * 119.38975 * 359.77475 * 14 13 12 16 16 C 1.44981 * 130.46354 * 179.97438 * 15 14 13 17 17 C 1.32005 * 114.84544 * 180.02562 * 16 15 14 18 18 S 1.75339 * 111.45626 * 359.97438 * 17 16 15 19 19 C 1.40254 * 117.63552 * 359.97438 * 15 14 13 20 20 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 21 21 C 1.36932 * 120.00140 * 84.99833 * 20 2 1 22 22 H 1.07994 * 120.00447 * 359.97438 * 21 20 2 23 23 C 1.38813 * 119.99838 * 180.02562 * 21 20 2 24 24 N 1.31623 * 120.00145 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99922 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00202 * 25 23 21 27 27 H 1.48505 * 109.46763 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47098 * 299.99805 * 25 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.08997 * 109.46835 * 300.00228 * 7 5 4 35 35 H 1.09001 * 109.47061 * 60.00142 * 7 5 4 36 36 H 1.09000 * 109.46883 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99978 * 24.99531 * 8 5 4 38 38 H 1.07996 * 119.25230 * 180.24786 * 13 12 11 39 39 H 1.07999 * 120.30239 * 179.74714 * 14 13 12 40 40 H 1.07999 * 122.58013 * 359.97438 * 16 15 14 41 41 H 1.08001 * 124.27224 * 179.97438 * 17 16 15 42 42 H 0.97005 * 119.99374 * 264.99912 * 20 2 1 43 43 H 0.97001 * 119.99679 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3867 7 6 4.0852 -1.4383 2.4924 8 7 3.9480 0.7894 1.4925 9 6 5.1611 1.2136 1.0868 10 8 5.9377 0.4323 0.5729 11 6 5.5476 2.6296 1.2668 12 7 4.6956 3.4780 1.8226 13 6 4.9958 4.7474 2.0085 14 6 6.2132 5.2623 1.6234 15 6 7.1649 4.4128 1.0201 16 6 8.4996 4.6940 0.5290 17 6 9.1312 3.6557 0.0135 18 16 8.1441 2.2080 0.0779 19 6 6.8147 3.0664 0.8420 20 7 2.0184 -0.6905 -1.1962 21 6 2.1492 -0.0073 -2.3757 22 1 1.8920 1.0405 -2.4243 23 6 2.6114 -0.6617 -3.5093 24 7 2.9245 -1.9388 -3.4503 25 14 2.7892 0.2701 -5.1185 26 1 3.7445 1.3926 -4.9377 27 1 3.2983 -0.6483 -6.1686 28 1 1.4666 0.8068 -5.5284 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.6546 -1.0594 3.4192 35 1 3.8002 -2.4819 2.3593 36 1 5.1716 -1.3617 2.5380 37 1 3.3284 1.4129 1.9029 38 1 4.2690 5.3995 2.4697 39 1 6.4376 6.3069 1.7813 40 1 8.9429 5.6775 0.5800 41 1 10.1298 3.6932 -0.3961 42 1 2.2491 -1.6317 -1.1527 43 1 3.2479 -2.3959 -4.2423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134653507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:39 Heat of formation + Delta-G solvation = 27.748461 kcal Electronic energy + Delta-G solvation = -26293.586084 eV Core-core repulsion = 22658.399963 eV Total energy + Delta-G solvation = -3635.186121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68028 -39.12600 -36.78774 -36.14455 -34.42128 -32.25237 -31.73594 -30.48272 -30.26743 -28.52647 -26.27389 -24.89533 -24.45682 -23.53749 -21.86453 -21.05465 -20.21403 -19.63527 -18.37624 -17.50315 -17.02824 -16.69448 -15.75329 -15.22367 -15.13789 -14.87555 -14.65617 -14.31160 -14.07250 -13.87280 -13.79841 -13.48103 -12.92340 -12.80375 -12.65687 -12.27340 -12.11645 -12.06917 -11.87659 -11.67345 -11.53902 -11.01314 -10.86210 -10.76679 -10.55492 -10.37422 -10.18674 -10.10022 -9.96392 -9.83906 -9.60353 -9.54479 -9.29523 -8.80908 -8.69127 -7.89944 -6.85108 -5.66486 -2.93917 0.25245 0.66920 1.39436 1.94971 1.97761 2.93380 3.29578 3.50003 3.54456 3.55117 3.79445 4.13541 4.25918 4.53644 4.68020 4.70682 4.98799 5.14775 5.19751 5.24499 5.31894 5.46773 5.55467 5.56991 5.68072 5.75317 5.82896 5.95369 6.00058 6.02754 6.08918 6.20774 6.27679 6.36103 6.40964 6.50158 6.63718 6.75645 6.86923 6.98748 7.14970 7.51136 7.78789 7.87429 8.46690 8.52243 9.63387 10.20966 10.55561 11.56264 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.004258 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.548557 B = 6574.348679 C = 7735.238749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.130 4.130 5 C 0.141 3.859 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.690 5.690 9 C 0.565 3.435 10 O -0.518 6.518 11 C 0.141 3.859 12 N -0.444 5.444 13 C 0.080 3.920 14 C -0.113 4.113 15 C -0.046 4.046 16 C -0.134 4.134 17 C -0.204 4.204 18 S 0.203 5.797 19 C -0.166 4.166 20 N -0.720 5.720 21 C -0.233 4.233 22 H 0.065 0.935 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.405 0.595 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.171 0.829 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.354 13.060 15.247 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.340 5.340 9 C 0.349 3.651 10 O -0.394 6.394 11 C -0.009 4.009 12 N -0.156 5.156 13 C -0.074 4.074 14 C -0.135 4.135 15 C -0.062 4.062 16 C -0.165 4.165 17 C -0.340 4.340 18 S 0.468 5.532 19 C -0.286 4.286 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.083 0.917 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.241 0.759 38 H 0.183 0.817 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.378 10.798 14.513 19.936 hybrid contribution 0.380 2.486 -0.655 2.598 sum 8.758 13.284 13.859 21.100 Atomic orbital electron populations 1.22445 0.99508 1.00743 0.99774 1.20237 0.91594 0.95642 0.86496 0.93535 1.22163 0.93523 1.02244 0.98956 1.21132 0.95376 0.79683 1.00038 0.87438 1.22182 1.01518 1.00193 0.97999 1.45757 1.15707 1.11864 1.60684 1.17658 0.83044 0.85437 0.78981 1.90802 1.51182 1.54360 1.43047 1.20761 0.88617 0.94703 0.96834 1.67582 1.32297 1.04244 1.11474 1.22464 0.95430 0.91341 0.98193 1.22078 0.93464 1.00392 0.97549 1.19499 0.95088 0.91986 0.99660 1.20736 0.92605 1.00476 1.02639 1.25815 1.04995 0.98736 1.04430 1.85240 1.02334 1.06517 1.59093 1.23702 1.00402 0.98369 1.06096 1.42385 1.77997 1.10528 1.05265 1.19109 1.36326 0.93609 0.87361 0.91654 1.24667 1.02296 0.95919 0.97833 1.69636 1.51029 1.08562 1.28799 0.86361 0.77652 0.78745 0.84028 1.21431 1.21698 1.21438 0.93553 0.94671 0.92963 0.91922 0.90492 0.93039 0.91563 0.92506 0.75918 0.81658 0.83971 0.83536 0.81151 0.78345 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.49 37.16 0.35 -2.62 16 2 C 0.17 3.35 2.84 -67.93 -0.19 3.16 16 3 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 4 C -0.13 -2.06 4.29 -26.73 -0.11 -2.18 16 5 C 0.14 2.39 2.52 -67.93 -0.17 2.22 16 6 H 0.11 2.33 7.05 -51.93 -0.37 1.96 16 7 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 8 N -0.69 -11.30 4.44 -54.74 -0.24 -11.54 16 9 C 0.57 10.37 7.77 -12.32 -0.10 10.27 16 10 O -0.52 -10.97 14.69 5.32 0.08 -10.89 16 11 C 0.14 2.29 6.78 -82.76 -0.56 1.73 16 12 N -0.44 -6.18 9.51 -9.78 -0.09 -6.27 16 13 C 0.08 0.85 11.12 -17.79 -0.20 0.65 16 14 C -0.11 -1.11 10.18 -38.70 -0.39 -1.50 16 15 C -0.05 -0.56 6.09 -105.38 -0.64 -1.21 16 16 C -0.13 -1.34 10.39 -38.83 -0.40 -1.75 16 17 C -0.20 -2.10 11.02 28.82 0.32 -1.79 16 18 S 0.20 2.91 21.43 -107.50 -2.30 0.61 16 19 C -0.17 -2.53 6.33 -37.93 -0.24 -2.77 16 20 N -0.72 -18.06 4.49 -53.43 -0.24 -18.30 16 21 C -0.23 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 25 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.41 5.86 7.93 -40.82 -0.32 5.54 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 43 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -34.12 376.07 -9.69 -43.80 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.02 Total: 11.57 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.23 Total: -4.90 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.15 Total: -64.18 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.30 Total: 0.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.12 -9.69 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.552 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds