Wall clock time and date at job start Tue Mar 31 2020 18:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.53001 * 109.47035 * 185.00124 * 5 4 2 8 8 N 1.46501 * 109.47107 * 65.00275 * 5 4 2 9 9 C 1.34770 * 119.99608 * 205.00170 * 8 5 4 10 10 O 1.21557 * 120.00450 * 359.97438 * 9 8 5 11 11 C 1.47883 * 119.99788 * 179.97438 * 9 8 5 12 12 N 1.32464 * 119.75145 * 359.73235 * 11 9 8 13 13 C 1.31757 * 121.98172 * 179.75241 * 12 11 9 14 14 C 1.37678 * 121.49181 * 0.49558 * 13 12 11 15 15 C 1.41111 * 119.38975 * 359.77475 * 14 13 12 16 16 C 1.44981 * 130.46354 * 179.97438 * 15 14 13 17 17 C 1.32005 * 114.84544 * 180.02562 * 16 15 14 18 18 S 1.75339 * 111.45626 * 359.97438 * 17 16 15 19 19 C 1.40254 * 117.63552 * 359.97438 * 15 14 13 20 20 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 21 21 C 1.36932 * 120.00140 * 84.99833 * 20 2 1 22 22 H 1.07994 * 120.00447 * 359.97438 * 21 20 2 23 23 C 1.38813 * 119.99838 * 180.02562 * 21 20 2 24 24 N 1.31623 * 120.00145 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99922 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00202 * 25 23 21 27 27 H 1.48505 * 109.46763 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47098 * 299.99805 * 25 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.08997 * 109.46835 * 300.00228 * 7 5 4 35 35 H 1.09001 * 109.47061 * 60.00142 * 7 5 4 36 36 H 1.09000 * 109.46883 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99978 * 24.99531 * 8 5 4 38 38 H 1.07996 * 119.25230 * 180.24786 * 13 12 11 39 39 H 1.07999 * 120.30239 * 179.74714 * 14 13 12 40 40 H 1.07999 * 122.58013 * 359.97438 * 16 15 14 41 41 H 1.08001 * 124.27224 * 179.97438 * 17 16 15 42 42 H 0.97005 * 119.99374 * 264.99912 * 20 2 1 43 43 H 0.97001 * 119.99679 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3867 7 6 4.0852 -1.4383 2.4924 8 7 3.9480 0.7894 1.4925 9 6 5.1611 1.2136 1.0868 10 8 5.9377 0.4323 0.5729 11 6 5.5476 2.6296 1.2668 12 7 4.6956 3.4780 1.8226 13 6 4.9958 4.7474 2.0085 14 6 6.2132 5.2623 1.6234 15 6 7.1649 4.4128 1.0201 16 6 8.4996 4.6940 0.5290 17 6 9.1312 3.6557 0.0135 18 16 8.1441 2.2080 0.0779 19 6 6.8147 3.0664 0.8420 20 7 2.0184 -0.6905 -1.1962 21 6 2.1492 -0.0073 -2.3757 22 1 1.8920 1.0405 -2.4243 23 6 2.6114 -0.6617 -3.5093 24 7 2.9245 -1.9388 -3.4503 25 14 2.7892 0.2701 -5.1185 26 1 3.7445 1.3926 -4.9377 27 1 3.2983 -0.6483 -6.1686 28 1 1.4666 0.8068 -5.5284 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.6546 -1.0594 3.4192 35 1 3.8002 -2.4819 2.3593 36 1 5.1716 -1.3617 2.5380 37 1 3.3284 1.4129 1.9029 38 1 4.2690 5.3995 2.4697 39 1 6.4376 6.3069 1.7813 40 1 8.9429 5.6775 0.5800 41 1 10.1298 3.6932 -0.3961 42 1 2.2491 -1.6317 -1.1527 43 1 3.2479 -2.3959 -4.2423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134653507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:38 Heat of formation + Delta-G solvation = 4.358560 kcal Electronic energy + Delta-G solvation = -26294.600346 eV Core-core repulsion = 22658.399963 eV Total energy + Delta-G solvation = -3636.200383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73428 -40.37345 -38.33003 -37.03698 -36.09894 -34.05488 -32.96563 -31.60163 -31.35274 -30.41198 -27.62178 -26.01858 -25.62380 -25.34724 -22.95324 -22.18862 -21.51677 -21.18716 -19.50223 -19.20281 -18.46452 -17.67421 -17.10010 -16.67484 -16.37896 -16.09487 -15.76367 -15.65178 -15.51393 -15.23686 -15.07001 -14.83800 -14.51142 -14.24461 -13.63316 -13.60941 -13.39866 -13.22580 -13.15775 -12.98275 -12.87163 -12.80434 -12.68144 -12.29472 -12.24830 -11.87418 -11.84888 -11.57298 -11.44446 -11.18501 -10.92824 -10.92279 -10.77514 -10.21071 -10.06130 -8.95816 -8.91660 -7.92875 -5.18107 -0.68939 -0.29149 0.41347 1.05843 1.11905 1.39237 1.43054 1.48187 1.79082 2.08192 2.54527 2.73372 3.10828 3.40888 3.46631 3.63049 3.75332 3.80977 4.00311 4.09983 4.20864 4.33858 4.38842 4.43521 4.52587 4.56167 4.67650 4.77500 4.79552 4.82331 4.92188 5.00237 5.02872 5.09278 5.20226 5.25088 5.32616 5.39866 5.47208 5.48870 5.59357 5.63193 6.30256 6.40377 6.72682 7.17429 7.35979 8.15865 8.36698 9.30591 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.004258 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.548557 B = 6574.348679 C = 7735.238749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.036 0.964 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.051 0.949 7 C -0.150 4.150 8 N -0.681 5.681 9 C 0.554 3.446 10 O -0.563 6.563 11 C 0.102 3.898 12 N -0.452 5.452 13 C 0.075 3.925 14 C -0.088 4.088 15 C -0.059 4.059 16 C -0.123 4.123 17 C -0.191 4.191 18 S 0.108 5.892 19 C -0.185 4.185 20 N -0.730 5.730 21 C -0.228 4.228 22 H 0.065 0.935 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.959 3.041 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.274 1.274 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.415 0.585 38 H 0.209 0.791 39 H 0.193 0.807 40 H 0.192 0.808 41 H 0.203 0.797 42 H 0.371 0.629 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.758 17.026 17.331 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.054 0.946 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.069 0.931 7 C -0.208 4.208 8 N -0.332 5.332 9 C 0.339 3.661 10 O -0.441 6.441 11 C -0.046 4.046 12 N -0.164 5.164 13 C -0.081 4.081 14 C -0.109 4.109 15 C -0.075 4.075 16 C -0.152 4.152 17 C -0.326 4.326 18 S 0.372 5.628 19 C -0.304 4.304 20 N -0.371 5.371 21 C -0.360 4.360 22 H 0.083 0.917 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.789 3.211 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.200 1.200 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.253 0.747 38 H 0.226 0.774 39 H 0.210 0.790 40 H 0.209 0.791 41 H 0.220 0.780 42 H 0.203 0.797 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.739 14.806 16.642 23.581 hybrid contribution 0.549 1.462 -1.173 1.953 sum 8.288 16.269 15.469 23.930 Atomic orbital electron populations 1.22285 0.97466 1.00996 1.00671 1.20498 0.92831 0.94980 0.86128 0.94630 1.22076 0.92450 1.02480 0.98510 1.20966 0.95983 0.80342 0.98717 0.93102 1.22075 1.00355 1.00404 0.97951 1.45684 1.15447 1.11802 1.60268 1.18196 0.82996 0.86624 0.78293 1.90769 1.52442 1.55946 1.44977 1.20415 0.90008 0.93950 1.00217 1.67538 1.32058 1.05609 1.11219 1.23296 0.96865 0.90428 0.97528 1.22678 0.91901 1.02190 0.94091 1.20076 0.96666 0.90930 0.99820 1.21184 0.91294 1.01980 1.00730 1.26021 1.05623 0.96133 1.04843 1.85472 1.05053 1.11029 1.61217 1.23854 0.99992 0.99853 1.06708 1.42564 1.78270 1.10081 1.06170 1.19422 1.34385 0.93619 0.88598 0.91739 1.25403 1.03419 0.96851 1.01057 1.69789 1.52897 1.09966 1.29126 0.85419 0.77893 0.77365 0.80422 1.21562 1.21952 1.20030 0.93608 0.90535 0.95240 0.87651 0.89976 0.90062 0.90600 0.94387 0.74721 0.77405 0.78959 0.79077 0.77957 0.79705 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.49 71.98 0.68 -4.64 16 2 C 0.16 6.41 2.84 44.99 0.13 6.54 16 3 H 0.04 1.47 7.56 -2.39 -0.02 1.46 16 4 C -0.12 -3.58 4.29 30.59 0.13 -3.45 16 5 C 0.14 5.03 2.52 44.99 0.11 5.14 16 6 H 0.05 2.38 7.05 -2.39 -0.02 2.37 16 7 C -0.15 -4.27 9.48 71.98 0.68 -3.58 16 8 N -0.68 -23.04 4.44 -445.36 -1.98 -25.02 16 9 C 0.55 21.74 7.77 86.80 0.67 22.41 16 10 O -0.56 -26.28 14.69 -3.90 -0.06 -26.34 16 11 C 0.10 3.42 6.78 42.18 0.29 3.71 16 12 N -0.45 -12.06 9.51 -184.87 -1.76 -13.82 16 13 C 0.07 1.31 11.12 84.57 0.94 2.25 16 14 C -0.09 -1.33 10.18 22.84 0.23 -1.09 16 15 C -0.06 -1.30 6.09 -20.36 -0.12 -1.42 16 16 C -0.12 -2.06 10.39 23.09 0.24 -1.82 16 17 C -0.19 -3.69 11.02 66.91 0.74 -2.96 16 18 S 0.11 3.35 21.43 -56.49 -1.21 2.14 16 19 C -0.18 -5.75 6.33 23.34 0.15 -5.61 16 20 N -0.73 -37.86 4.49 -322.94 -1.45 -39.31 16 21 C -0.23 -13.34 9.93 84.03 0.83 -12.51 16 22 H 0.06 3.71 7.83 -2.91 -0.02 3.68 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 24 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 25 Si 0.96 49.37 29.55 68.60 2.03 51.40 16 26 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 27 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 28 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.42 11.89 7.93 -92.71 -0.73 11.15 16 38 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.37 20.77 7.80 -92.70 -0.72 20.04 16 43 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -82.23 376.07 1.62 -80.61 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.41 Total: 33.43 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 6.17 Total: -1.13 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -4.90 Total: -140.11 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.03 Total: 51.40 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.21 Total: 2.14 kcal Total: -82.23 1.62 -80.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.970 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds