Wall clock time and date at job start Tue Mar 31 2020 18:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47051 * 2 1 4 4 C 1.53002 * 109.46935 * 239.99956 * 2 1 3 5 5 C 1.53001 * 109.47310 * 174.99494 * 4 2 1 6 6 H 1.08996 * 109.47426 * 305.00428 * 5 4 2 7 7 C 1.53001 * 109.47422 * 184.99822 * 5 4 2 8 8 N 1.46507 * 109.46876 * 65.00164 * 5 4 2 9 9 C 1.36927 * 120.00020 * 204.99895 * 8 5 4 10 10 H 1.08006 * 120.00338 * 0.02562 * 9 8 5 11 11 C 1.38814 * 119.99996 * 179.97438 * 9 8 5 12 12 N 1.31621 * 120.00018 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00176 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47446 * 59.99704 * 13 11 9 15 15 H 1.48500 * 109.47260 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46775 * 299.99859 * 13 11 9 17 17 N 1.46494 * 109.47327 * 120.00167 * 2 1 3 18 18 C 1.34777 * 120.00134 * 274.99718 * 17 2 1 19 19 O 1.21554 * 119.99578 * 359.97438 * 18 17 2 20 20 C 1.47875 * 120.00261 * 180.02562 * 18 17 2 21 21 N 1.32461 * 119.74877 * 0.48348 * 20 18 17 22 22 C 1.31762 * 121.98000 * 179.97438 * 21 20 18 23 23 C 1.37676 * 121.49208 * 359.77837 * 22 21 20 24 24 C 1.41109 * 119.39449 * 359.97438 * 23 22 21 25 25 C 1.44974 * 130.47081 * 179.97438 * 24 23 22 26 26 C 1.32001 * 114.84920 * 179.97438 * 25 24 23 27 27 S 1.75350 * 111.45668 * 359.97438 * 26 25 24 28 28 C 1.40265 * 117.63296 * 359.97438 * 24 23 22 29 29 H 1.09001 * 109.47410 * 60.00299 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46907 * 299.99409 * 1 2 3 32 32 H 1.08999 * 109.47698 * 294.99957 * 4 2 1 33 33 H 1.09006 * 109.47315 * 54.99844 * 4 2 1 34 34 H 1.08995 * 109.47136 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47315 * 300.00674 * 7 5 4 36 36 H 1.09003 * 109.46347 * 60.00338 * 7 5 4 37 37 H 0.97003 * 119.99814 * 25.00062 * 8 5 4 38 38 H 0.96996 * 120.00069 * 180.02562 * 12 11 9 39 39 H 0.97007 * 120.00128 * 95.00092 * 17 2 1 40 40 H 1.07997 * 119.25499 * 179.75485 * 22 21 20 41 41 H 1.08000 * 120.30182 * 179.97438 * 23 22 21 42 42 H 1.08004 * 122.57573 * 359.97438 * 25 24 23 43 43 H 1.08005 * 124.27814 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3139 6 1 3.8570 0.4358 -1.2680 7 6 4.0644 -1.2250 -2.6242 8 7 4.1537 -1.3342 -0.1826 9 6 5.3943 -0.9856 0.2803 10 1 5.9386 -0.1789 -0.1882 11 6 5.9521 -1.6683 1.3526 12 7 5.2887 -2.6510 1.9240 13 14 7.6443 -1.1923 1.9846 14 1 7.6256 0.2237 2.4315 15 1 8.0099 -2.0668 3.1278 16 1 8.6426 -1.3550 0.8972 17 7 2.0184 -0.6906 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8585 1.1612 2.4115 20 6 2.6407 -0.7152 3.5643 21 7 2.9638 -1.9981 3.4967 22 6 3.4083 -2.6619 4.5445 23 6 3.5648 -2.0520 5.7689 24 6 3.2433 -0.6851 5.9079 25 6 3.3139 0.1852 7.0652 26 6 2.9329 1.4301 6.8472 27 16 2.4427 1.6683 5.1806 28 6 2.7740 -0.0084 4.7725 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7516 -1.7715 -1.2057 33 1 1.6053 -0.2618 -2.1371 34 1 5.1506 -1.1477 -2.6704 35 1 3.7722 -2.2741 -2.6701 36 1 3.6262 -0.6886 -3.4659 37 1 3.6648 -2.0585 0.2385 38 1 5.6783 -3.1279 2.6734 39 1 2.2491 -1.6318 1.1525 40 1 3.6551 -3.7081 4.4407 41 1 3.9303 -2.6147 6.6152 42 1 3.6522 -0.1586 8.0316 43 1 2.9249 2.2045 7.6001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134653508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:43 Heat of formation + Delta-G solvation = 39.567168 kcal Electronic energy + Delta-G solvation = -27444.059663 eV Core-core repulsion = 23809.386040 eV Total energy + Delta-G solvation = -3634.673623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.11426 -38.79429 -36.71725 -35.62863 -34.11787 -32.21220 -31.35846 -30.10061 -29.90017 -28.42992 -26.29444 -24.38061 -23.92321 -23.56128 -21.45367 -20.74346 -20.15240 -19.54300 -17.85969 -17.09690 -16.84147 -16.21306 -15.61744 -14.76927 -14.71244 -14.62541 -14.36518 -13.90560 -13.80398 -13.72231 -13.57373 -13.25165 -12.81015 -12.62064 -12.28089 -12.09435 -11.93173 -11.71010 -11.65854 -11.61123 -11.49809 -10.95680 -10.79937 -10.67992 -10.53710 -10.33087 -10.22111 -9.85185 -9.60075 -9.50634 -9.42079 -8.99369 -8.88442 -8.75222 -8.32963 -7.45451 -6.82997 -5.66324 -2.91965 0.82190 1.22628 1.80148 2.32465 2.46581 3.40506 3.45687 3.48329 3.52598 3.75537 4.42564 4.64237 4.68327 4.81833 5.04808 5.14909 5.25362 5.41993 5.46638 5.56637 5.64459 5.72660 5.74356 5.77977 5.80634 5.94124 5.99566 6.03220 6.06603 6.19122 6.29389 6.31920 6.40806 6.45950 6.49083 6.60524 6.66896 6.91000 6.93796 7.10669 7.21073 7.77922 8.14578 8.45031 8.49605 8.88873 9.60413 10.15503 10.51324 11.51671 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.006007 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.957678 B = 4660.015507 C = 6236.852892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.084 0.916 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.046 0.954 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.233 4.233 10 H 0.063 0.937 11 C -0.004 4.004 12 N -0.902 5.902 13 Si 0.888 3.112 14 H -0.291 1.291 15 H -0.293 1.293 16 H -0.289 1.289 17 N -0.671 5.671 18 C 0.578 3.422 19 O -0.553 6.553 20 C 0.135 3.865 21 N -0.376 5.376 22 C 0.105 3.895 23 C -0.127 4.127 24 C -0.057 4.057 25 C -0.127 4.127 26 C -0.213 4.213 27 S 0.167 5.833 28 C -0.161 4.161 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.381 0.619 38 H 0.249 0.751 39 H 0.416 0.584 40 H 0.161 0.839 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 2.114 5.404 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.102 0.898 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.064 0.936 7 C -0.223 4.223 8 N -0.357 5.357 9 C -0.365 4.365 10 H 0.081 0.919 11 C -0.201 4.201 12 N -0.549 5.549 13 Si 0.720 3.280 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.216 1.216 17 N -0.323 5.323 18 C 0.363 3.637 19 O -0.432 6.432 20 C -0.015 4.015 21 N -0.087 5.087 22 C -0.049 4.049 23 C -0.149 4.149 24 C -0.072 4.072 25 C -0.158 4.158 26 C -0.349 4.349 27 S 0.430 5.570 28 C -0.280 4.280 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.217 0.783 38 H 0.059 0.941 39 H 0.256 0.744 40 H 0.178 0.822 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.694 3.792 3.892 11.113 hybrid contribution 2.092 -1.292 2.165 3.276 sum -7.602 2.500 6.056 10.036 Atomic orbital electron populations 1.22206 0.96147 1.01723 1.01963 1.20874 0.92592 0.97766 0.84508 0.89802 1.22213 0.97893 1.00657 0.96414 1.20278 0.89655 0.95859 0.88356 0.93593 1.22419 1.01470 1.00328 0.98067 1.42447 1.18644 1.40063 1.34583 1.19034 0.93308 1.13234 1.10891 0.91938 1.24563 0.97652 0.98953 0.98961 1.69671 1.36664 1.23664 1.24935 0.86562 0.85688 0.77514 0.78203 1.21766 1.21933 1.21597 1.45784 1.63673 1.15060 1.07799 1.17602 0.77320 0.85742 0.82992 1.90681 1.52469 1.15167 1.84908 1.20604 0.99004 0.90741 0.91172 1.67698 1.05651 1.05974 1.29368 1.22397 0.95330 1.00360 0.86862 1.22057 1.00321 0.92754 0.99754 1.19378 1.00858 0.94785 0.92156 1.20727 1.04179 0.92658 0.98265 1.25608 1.05952 1.00591 1.02711 1.84744 1.67370 1.05242 0.99688 1.23597 1.06986 0.99506 0.97950 0.92045 0.92736 0.92386 0.91665 0.90793 0.92945 0.93619 0.94702 0.78344 0.94055 0.74398 0.82200 0.84806 0.84074 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 2 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 3 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.13 -2.04 4.43 -26.73 -0.12 -2.16 16 5 C 0.17 3.19 2.89 -67.93 -0.20 3.00 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.84 9.49 37.16 0.35 -2.48 16 8 N -0.71 -16.39 3.84 -53.42 -0.21 -16.59 16 9 C -0.23 -6.18 9.93 -15.06 -0.15 -6.33 16 10 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 11 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 12 N -0.90 -23.85 11.90 55.49 0.66 -23.19 16 13 Si 0.89 22.36 29.55 -169.99 -5.02 17.34 16 14 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 N -0.67 -12.84 3.79 -54.74 -0.21 -13.04 16 18 C 0.58 12.23 7.77 -12.32 -0.10 12.13 16 19 O -0.55 -12.25 14.69 5.32 0.08 -12.17 16 20 C 0.14 2.82 6.78 -82.76 -0.56 2.26 16 21 N -0.38 -7.58 8.46 -9.78 -0.08 -7.66 16 22 C 0.11 1.84 11.02 -17.79 -0.20 1.64 16 23 C -0.13 -1.97 10.18 -38.70 -0.39 -2.37 16 24 C -0.06 -0.95 6.09 -105.38 -0.64 -1.60 16 25 C -0.13 -1.76 10.39 -38.83 -0.40 -2.16 16 26 C -0.21 -2.84 11.02 28.82 0.32 -2.52 16 27 S 0.17 2.80 21.43 -107.50 -2.30 0.49 16 28 C -0.16 -3.10 6.33 -37.93 -0.24 -3.34 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.38 9.03 5.70 -40.82 -0.23 8.80 16 38 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 39 H 0.42 8.27 5.83 -40.82 -0.24 8.04 16 40 H 0.16 2.47 8.06 -52.49 -0.42 2.04 16 41 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -29.74 369.57 -9.66 -39.40 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.90 Total: 13.61 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.24 Total: -3.76 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.16 Total: -60.48 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.30 Total: 0.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.74 -9.66 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.965 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds