Wall clock time and date at job start Tue Mar 31 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47051 * 2 1 4 4 C 1.53002 * 109.46935 * 239.99956 * 2 1 3 5 5 C 1.53001 * 109.47310 * 174.99494 * 4 2 1 6 6 H 1.08996 * 109.47426 * 305.00428 * 5 4 2 7 7 C 1.53001 * 109.47422 * 184.99822 * 5 4 2 8 8 N 1.46507 * 109.46876 * 65.00164 * 5 4 2 9 9 C 1.36927 * 120.00020 * 204.99895 * 8 5 4 10 10 H 1.08006 * 120.00338 * 0.02562 * 9 8 5 11 11 C 1.38814 * 119.99996 * 179.97438 * 9 8 5 12 12 N 1.31621 * 120.00018 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00176 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47446 * 59.99704 * 13 11 9 15 15 H 1.48500 * 109.47260 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46775 * 299.99859 * 13 11 9 17 17 N 1.46494 * 109.47327 * 120.00167 * 2 1 3 18 18 C 1.34777 * 120.00134 * 274.99718 * 17 2 1 19 19 O 1.21554 * 119.99578 * 359.97438 * 18 17 2 20 20 C 1.47875 * 120.00261 * 180.02562 * 18 17 2 21 21 N 1.32461 * 119.74877 * 0.48348 * 20 18 17 22 22 C 1.31762 * 121.98000 * 179.97438 * 21 20 18 23 23 C 1.37676 * 121.49208 * 359.77837 * 22 21 20 24 24 C 1.41109 * 119.39449 * 359.97438 * 23 22 21 25 25 C 1.44974 * 130.47081 * 179.97438 * 24 23 22 26 26 C 1.32001 * 114.84920 * 179.97438 * 25 24 23 27 27 S 1.75350 * 111.45668 * 359.97438 * 26 25 24 28 28 C 1.40265 * 117.63296 * 359.97438 * 24 23 22 29 29 H 1.09001 * 109.47410 * 60.00299 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46907 * 299.99409 * 1 2 3 32 32 H 1.08999 * 109.47698 * 294.99957 * 4 2 1 33 33 H 1.09006 * 109.47315 * 54.99844 * 4 2 1 34 34 H 1.08995 * 109.47136 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47315 * 300.00674 * 7 5 4 36 36 H 1.09003 * 109.46347 * 60.00338 * 7 5 4 37 37 H 0.97003 * 119.99814 * 25.00062 * 8 5 4 38 38 H 0.96996 * 120.00069 * 180.02562 * 12 11 9 39 39 H 0.97007 * 120.00128 * 95.00092 * 17 2 1 40 40 H 1.07997 * 119.25499 * 179.75485 * 22 21 20 41 41 H 1.08000 * 120.30182 * 179.97438 * 23 22 21 42 42 H 1.08004 * 122.57573 * 359.97438 * 25 24 23 43 43 H 1.08005 * 124.27814 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3139 6 1 3.8570 0.4358 -1.2680 7 6 4.0644 -1.2250 -2.6242 8 7 4.1537 -1.3342 -0.1826 9 6 5.3943 -0.9856 0.2803 10 1 5.9386 -0.1789 -0.1882 11 6 5.9521 -1.6683 1.3526 12 7 5.2887 -2.6510 1.9240 13 14 7.6443 -1.1923 1.9846 14 1 7.6256 0.2237 2.4315 15 1 8.0099 -2.0668 3.1278 16 1 8.6426 -1.3550 0.8972 17 7 2.0184 -0.6906 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8585 1.1612 2.4115 20 6 2.6407 -0.7152 3.5643 21 7 2.9638 -1.9981 3.4967 22 6 3.4083 -2.6619 4.5445 23 6 3.5648 -2.0520 5.7689 24 6 3.2433 -0.6851 5.9079 25 6 3.3139 0.1852 7.0652 26 6 2.9329 1.4301 6.8472 27 16 2.4427 1.6683 5.1806 28 6 2.7740 -0.0084 4.7725 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7516 -1.7715 -1.2057 33 1 1.6053 -0.2618 -2.1371 34 1 5.1506 -1.1477 -2.6704 35 1 3.7722 -2.2741 -2.6701 36 1 3.6262 -0.6886 -3.4659 37 1 3.6648 -2.0585 0.2385 38 1 5.6783 -3.1279 2.6734 39 1 2.2491 -1.6318 1.1525 40 1 3.6551 -3.7081 4.4407 41 1 3.9303 -2.6147 6.6152 42 1 3.6522 -0.1586 8.0316 43 1 2.9249 2.2045 7.6001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134653508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:42 Heat of formation + Delta-G solvation = 22.262499 kcal Electronic energy + Delta-G solvation = -27444.810050 eV Core-core repulsion = 23809.386040 eV Total energy + Delta-G solvation = -3635.424010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50403 -40.22097 -38.25774 -36.85850 -35.75338 -33.96466 -32.79971 -31.53887 -31.16183 -30.12492 -27.59274 -25.75631 -25.48845 -25.18036 -22.78982 -21.99869 -21.65142 -21.01334 -19.17480 -19.02361 -18.24553 -17.53821 -17.04644 -16.56716 -16.18507 -15.99155 -15.61984 -15.56661 -15.34834 -15.02740 -14.96167 -14.73577 -14.26275 -14.11341 -13.57204 -13.47834 -13.30396 -13.22524 -12.96000 -12.90355 -12.78341 -12.75053 -12.60456 -12.28215 -12.16043 -11.80147 -11.71144 -11.53253 -11.38580 -10.98826 -10.82026 -10.74873 -10.39657 -10.02516 -9.84560 -8.76687 -8.69819 -7.70755 -4.94276 -0.44907 -0.11669 0.54036 1.13940 1.27744 1.40657 1.42609 1.46269 1.95176 2.34869 2.61480 3.01108 3.38777 3.56398 3.59239 3.79693 3.84861 3.96198 4.09039 4.19166 4.36101 4.39348 4.50051 4.56962 4.58038 4.62919 4.71065 4.84705 4.87339 4.88405 4.93152 5.07939 5.11396 5.14883 5.17547 5.33797 5.36843 5.43752 5.63533 5.65610 5.66240 5.76932 6.46108 6.63817 7.04918 7.35599 7.55191 8.28014 8.55525 9.45517 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.006007 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.957678 B = 4660.015507 C = 6236.852892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 H 0.059 0.941 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.025 0.975 7 C -0.152 4.152 8 N -0.717 5.717 9 C -0.243 4.243 10 H 0.046 0.954 11 C -0.039 4.039 12 N -0.902 5.902 13 Si 0.926 3.074 14 H -0.306 1.306 15 H -0.291 1.291 16 H -0.289 1.289 17 N -0.668 5.668 18 C 0.566 3.434 19 O -0.576 6.576 20 C 0.101 3.899 21 N -0.397 5.397 22 C 0.083 3.917 23 C -0.108 4.108 24 C -0.068 4.068 25 C -0.126 4.126 26 C -0.193 4.193 27 S 0.120 5.880 28 C -0.188 4.188 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.027 0.973 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.377 0.623 38 H 0.246 0.754 39 H 0.412 0.588 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 1.568 6.529 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.077 0.923 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.043 0.957 7 C -0.212 4.212 8 N -0.361 5.361 9 C -0.375 4.375 10 H 0.064 0.936 11 C -0.235 4.235 12 N -0.550 5.550 13 Si 0.759 3.241 14 H -0.234 1.234 15 H -0.217 1.217 16 H -0.216 1.216 17 N -0.318 5.318 18 C 0.352 3.648 19 O -0.458 6.458 20 C -0.048 4.048 21 N -0.108 5.108 22 C -0.072 4.072 23 C -0.129 4.129 24 C -0.084 4.084 25 C -0.156 4.156 26 C -0.328 4.328 27 S 0.383 5.617 28 C -0.307 4.307 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.212 0.788 38 H 0.056 0.944 39 H 0.251 0.749 40 H 0.193 0.807 41 H 0.195 0.805 42 H 0.201 0.799 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.278 3.246 4.990 11.878 hybrid contribution 2.267 -1.090 1.886 3.144 sum -8.012 2.156 6.875 10.775 Atomic orbital electron populations 1.22099 0.93576 1.02682 1.02480 1.21054 0.94547 0.96347 0.84226 0.92314 1.22128 0.94957 1.01459 0.97157 1.20481 0.92103 0.94291 0.87858 0.95675 1.22257 0.99947 1.00792 0.98163 1.42443 1.17642 1.40248 1.35731 1.19057 0.94688 1.12742 1.11039 0.93583 1.24944 0.99286 0.99700 0.99607 1.69733 1.36685 1.23707 1.24849 0.85984 0.84204 0.76200 0.77734 1.23437 1.21726 1.21589 1.45869 1.63126 1.14725 1.08104 1.17928 0.77303 0.85732 0.83861 1.90643 1.53684 1.15960 1.85474 1.20637 1.01010 0.91444 0.91750 1.67605 1.06289 1.06006 1.30880 1.22817 0.95862 1.01182 0.87338 1.22499 0.97732 0.92460 1.00240 1.19956 1.00242 0.95612 0.92590 1.21095 1.03678 0.92059 0.98739 1.25964 1.04457 1.01631 1.00761 1.84810 1.68478 1.05015 1.03404 1.23881 1.07738 1.00573 0.98485 0.89143 0.91483 0.94222 0.90684 0.87057 0.95423 0.93345 0.91264 0.78843 0.94429 0.74915 0.80663 0.80465 0.79875 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 2 C 0.14 4.72 2.57 44.99 0.12 4.84 16 3 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 4 C -0.12 -3.46 4.43 30.60 0.14 -3.33 16 5 C 0.16 6.10 2.89 44.99 0.13 6.23 16 6 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 7 C -0.15 -5.11 9.49 71.98 0.68 -4.43 16 8 N -0.72 -33.58 3.84 -322.93 -1.24 -34.82 16 9 C -0.24 -13.23 9.93 84.04 0.83 -12.39 16 10 H 0.05 2.61 7.83 -2.91 -0.02 2.58 16 11 C -0.04 -2.13 5.50 84.86 0.47 -1.66 16 12 N -0.90 -48.20 11.90 21.65 0.26 -47.94 16 13 Si 0.93 46.59 29.55 68.60 2.03 48.62 16 14 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 15 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 17 N -0.67 -26.38 3.79 -445.39 -1.69 -28.07 16 18 C 0.57 25.12 7.77 86.80 0.67 25.79 16 19 O -0.58 -26.98 14.69 -3.88 -0.06 -27.04 16 20 C 0.10 4.36 6.78 42.18 0.29 4.65 16 21 N -0.40 -16.34 8.46 -184.87 -1.56 -17.90 16 22 C 0.08 2.87 11.02 84.57 0.93 3.80 16 23 C -0.11 -3.13 10.18 22.84 0.23 -2.90 16 24 C -0.07 -2.19 6.09 -20.36 -0.12 -2.31 16 25 C -0.13 -3.05 10.39 23.09 0.24 -2.81 16 26 C -0.19 -4.62 11.02 66.91 0.74 -3.88 16 27 S 0.12 4.09 21.43 -56.49 -1.21 2.88 16 28 C -0.19 -7.33 6.33 23.34 0.15 -7.18 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.38 18.17 5.70 -92.71 -0.53 17.65 16 38 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 39 H 0.41 16.88 5.83 -92.70 -0.54 16.34 16 40 H 0.18 5.27 8.06 -2.91 -0.02 5.24 16 41 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 42 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 43 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -68.32 369.57 2.67 -65.65 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.03 Total: 37.50 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.17 Total: 1.12 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -4.23 Total: -128.73 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.04 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.21 Total: 2.88 kcal Total: -68.32 2.67 -65.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134653508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.911 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds