Wall clock time and date at job start Tue Mar 31 2020 18:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46967 * 2 1 4 4 C 1.52996 * 109.47333 * 240.00379 * 2 1 3 5 5 C 1.52999 * 109.47565 * 174.99945 * 4 2 1 6 6 H 1.09000 * 109.46842 * 54.99888 * 5 4 2 7 7 C 1.52998 * 109.47240 * 174.99628 * 5 4 2 8 8 N 1.46500 * 109.46995 * 295.00000 * 5 4 2 9 9 C 1.34771 * 120.00199 * 154.99884 * 8 5 4 10 10 O 1.21630 * 119.99754 * 0.02562 * 9 8 5 11 11 C 1.47175 * 120.00359 * 179.97438 * 9 8 5 12 12 C 1.33718 * 124.67026 * 179.97438 * 11 9 8 13 13 C 1.40429 * 115.60761 * 180.02562 * 12 11 9 14 14 N 1.34858 * 128.52957 * 179.97438 * 13 12 11 15 15 C 1.30763 * 122.23093 * 179.97438 * 14 13 12 16 16 C 1.38967 * 121.42588 * 0.02562 * 15 14 13 17 17 C 1.37863 * 119.16405 * 0.25266 * 16 15 14 18 18 C 1.39987 * 112.46579 * 0.02562 * 13 12 11 19 19 S 1.75503 * 124.66464 * 359.97438 * 11 9 8 20 20 N 1.46502 * 109.47273 * 120.00004 * 2 1 3 21 21 C 1.36932 * 120.00272 * 274.99976 * 20 2 1 22 22 H 1.08007 * 119.99628 * 0.02562 * 21 20 2 23 23 C 1.38813 * 120.00241 * 179.97438 * 21 20 2 24 24 N 1.31621 * 119.99679 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99728 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47067 * 90.00254 * 25 23 21 27 27 H 1.48501 * 109.47125 * 210.00053 * 25 23 21 28 28 H 1.48501 * 109.47353 * 330.00057 * 25 23 21 29 29 H 1.09003 * 109.47062 * 299.99685 * 1 2 3 30 30 H 1.08997 * 109.47637 * 59.99656 * 1 2 3 31 31 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47359 * 54.99620 * 4 2 1 33 33 H 1.09007 * 109.46724 * 295.00158 * 4 2 1 34 34 H 1.09006 * 109.47110 * 179.97438 * 7 5 4 35 35 H 1.08999 * 109.47654 * 299.99908 * 7 5 4 36 36 H 1.09000 * 109.46991 * 60.00351 * 7 5 4 37 37 H 0.97001 * 119.99583 * 334.99614 * 8 5 4 38 38 H 1.07993 * 122.19577 * 0.02562 * 12 11 9 39 39 H 1.07999 * 119.28227 * 180.02562 * 15 14 13 40 40 H 1.08002 * 120.41351 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.68196 * 179.72478 * 17 16 15 42 42 H 0.97005 * 119.99794 * 95.00222 * 20 2 1 43 43 H 0.97006 * 119.99022 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.9953 -0.9922 -0.3869 7 6 4.0851 -1.4382 -2.4925 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0867 10 8 5.9381 0.4318 -0.5726 11 6 5.5462 2.6227 -1.2667 12 6 6.7220 3.1428 -0.8994 13 6 6.8882 4.5124 -1.1611 14 7 7.9564 5.2937 -0.9016 15 6 7.9787 6.5664 -1.2008 16 6 6.8932 7.1873 -1.8070 17 6 5.7679 6.4442 -2.0933 18 6 5.7633 5.0810 -1.7699 19 16 4.5253 3.8516 -1.9931 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0076 2.3757 22 1 1.8919 1.0403 2.4243 23 6 2.6114 -0.6621 3.5093 24 7 2.7366 -0.0055 4.6431 25 14 3.0543 -2.4748 3.4256 26 1 4.4869 -2.6181 3.0618 27 1 2.8143 -3.1046 4.7489 28 1 2.2138 -3.1430 2.3997 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 5.1714 -1.3609 -2.5387 35 1 3.8001 -2.4818 -2.3596 36 1 3.6545 -1.0592 -3.4194 37 1 3.3283 1.4129 -1.9028 38 1 7.4932 2.5485 -0.4321 39 1 8.8597 7.1475 -0.9719 40 1 6.9291 8.2398 -2.0467 41 1 4.9087 6.9027 -2.5600 42 1 2.2491 -1.6318 1.1526 43 1 3.0600 -0.4629 5.4351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135181277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:39 Heat of formation + Delta-G solvation = 4.307200 kcal Electronic energy + Delta-G solvation = -25816.446708 eV Core-core repulsion = 22180.244098 eV Total energy + Delta-G solvation = -3636.202610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52326 -40.93977 -38.56888 -36.70114 -36.16294 -34.14605 -33.53763 -32.57260 -31.12736 -30.58851 -27.64268 -26.32163 -25.36135 -25.11614 -23.36306 -22.13330 -21.51777 -21.36350 -19.88828 -19.50329 -18.18472 -17.71286 -17.28163 -16.86618 -16.61489 -16.31550 -15.95171 -15.85268 -15.52431 -15.27044 -15.17949 -14.63018 -14.37814 -14.28100 -14.06258 -13.96132 -13.48338 -13.35637 -13.27724 -13.01686 -12.85239 -12.77982 -12.66345 -12.34956 -12.31303 -12.03055 -11.90895 -11.72752 -11.53884 -11.47361 -11.32894 -10.98166 -10.52641 -10.24620 -9.81759 -9.28311 -9.13166 -8.02439 -5.32684 -0.98635 0.02106 0.13435 0.54259 0.71902 1.31676 1.38853 1.42995 1.84922 1.99996 2.47417 2.68841 3.08324 3.30988 3.51489 3.61915 3.63972 3.79554 3.84254 3.98707 4.04096 4.30093 4.34205 4.47710 4.50039 4.55268 4.62591 4.68772 4.74725 4.80412 4.86330 4.92416 4.98394 5.03922 5.07434 5.16344 5.30396 5.32587 5.47786 5.55508 5.59986 5.78795 6.22424 6.33207 6.80374 7.01414 7.10454 7.88828 8.04644 9.19855 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.003414 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.372703 B = 8198.953626 C = 8840.943673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.040 0.960 4 C -0.122 4.122 5 C 0.139 3.861 6 H 0.054 0.946 7 C -0.153 4.153 8 N -0.695 5.695 9 C 0.582 3.418 10 O -0.566 6.566 11 C -0.222 4.222 12 C -0.055 4.055 13 C 0.083 3.917 14 N -0.490 5.490 15 C 0.119 3.881 16 C -0.133 4.133 17 C -0.043 4.043 18 C -0.200 4.200 19 S 0.203 5.797 20 N -0.749 5.749 21 C -0.214 4.214 22 H 0.053 0.947 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.947 3.053 26 H -0.292 1.292 27 H -0.296 1.296 28 H -0.243 1.243 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.409 0.591 38 H 0.140 0.860 39 H 0.198 0.802 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.362 0.638 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 13.284 -24.477 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.058 0.942 4 C -0.160 4.160 5 C 0.035 3.965 6 H 0.073 0.927 7 C -0.211 4.211 8 N -0.346 5.346 9 C 0.367 3.633 10 O -0.447 6.447 11 C -0.343 4.343 12 C -0.088 4.088 13 C -0.048 4.048 14 N -0.200 5.200 15 C -0.053 4.053 16 C -0.156 4.156 17 C -0.073 4.073 18 C -0.319 4.319 19 S 0.469 5.531 20 N -0.392 5.392 21 C -0.346 4.346 22 H 0.071 0.929 23 C -0.259 4.259 24 N -0.639 5.639 25 Si 0.775 3.225 26 H -0.220 1.220 27 H -0.223 1.223 28 H -0.167 1.167 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.158 0.842 39 H 0.215 0.785 40 H 0.212 0.788 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.108 12.287 -24.207 27.228 hybrid contribution 1.161 -0.585 1.307 1.844 sum 3.269 11.702 -22.899 25.923 Atomic orbital electron populations 1.22277 0.96961 1.01509 1.00880 1.20533 0.93097 0.95298 0.85383 0.94193 1.22181 0.92091 1.03229 0.98516 1.21100 0.96284 0.79921 0.99209 0.92722 1.22118 1.00534 1.00584 0.97897 1.45735 1.15118 1.12369 1.61369 1.17316 0.82671 0.85585 0.77695 1.90811 1.52742 1.56184 1.44916 1.23753 1.00555 0.98688 1.11268 1.19937 0.97304 0.93459 0.98134 1.18757 0.91617 0.93319 1.01057 1.67575 1.26138 1.08276 1.17973 1.23555 1.00101 0.88973 0.92683 1.22728 0.92220 1.03370 0.97250 1.21475 1.00646 0.88695 0.96446 1.24144 0.99200 1.01242 1.07276 1.83519 1.14144 0.94916 1.60564 1.42818 1.79935 1.09342 1.07144 1.18960 1.34047 0.94068 0.87485 0.92917 1.25432 1.02829 1.02219 0.95410 1.69885 1.55326 1.37536 1.01178 0.85515 0.78103 0.81630 0.77218 1.21956 1.22336 1.16660 0.95573 0.90137 0.92855 0.86840 0.88849 0.94317 0.90065 0.89688 0.75450 0.84202 0.78540 0.78844 0.80541 0.80447 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.16 5.66 2.84 44.99 0.13 5.79 16 3 H 0.04 1.49 7.56 -2.38 -0.02 1.47 16 4 C -0.12 -2.99 4.29 30.59 0.13 -2.86 16 5 C 0.14 4.07 2.52 44.99 0.11 4.18 16 6 H 0.05 2.18 7.05 -2.39 -0.02 2.16 16 7 C -0.15 -3.52 9.48 71.98 0.68 -2.84 16 8 N -0.69 -20.13 4.44 -446.05 -1.98 -22.11 16 9 C 0.58 20.99 7.76 86.59 0.67 21.66 16 10 O -0.57 -25.73 16.39 -4.13 -0.07 -25.80 16 11 C -0.22 -6.91 6.33 23.59 0.15 -6.76 16 12 C -0.05 -1.80 9.82 21.78 0.21 -1.58 16 13 C 0.08 2.38 6.95 39.64 0.28 2.65 16 14 N -0.49 -12.85 10.41 -189.84 -1.98 -14.83 16 15 C 0.12 1.87 11.15 85.03 0.95 2.81 16 16 C -0.13 -1.35 10.11 22.36 0.23 -1.12 16 17 C -0.04 -0.58 10.19 22.63 0.23 -0.35 16 18 C -0.20 -4.42 6.51 23.15 0.15 -4.27 16 19 S 0.20 4.34 22.26 -56.49 -1.26 3.08 16 20 N -0.75 -34.58 4.30 -322.94 -1.39 -35.97 16 21 C -0.21 -12.52 10.41 84.03 0.87 -11.64 16 22 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 23 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 24 N -0.99 -66.49 13.97 21.65 0.30 -66.19 16 25 Si 0.95 48.36 27.73 68.60 1.90 50.26 16 26 H -0.29 -15.30 7.11 99.48 0.71 -14.60 16 27 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 28 H -0.24 -10.83 6.52 99.48 0.65 -10.18 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.41 9.08 7.66 -92.71 -0.71 8.37 16 38 H 0.14 5.01 7.96 -2.91 -0.02 4.98 16 39 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.36 16.32 5.66 -92.70 -0.52 15.80 16 43 H 0.25 16.42 8.31 -92.70 -0.77 15.65 16 Total: -1.00 -87.52 375.17 1.23 -86.28 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.25 Total: 27.41 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.95 Total: -2.15 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -5.04 Total: -139.09 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.07 Total: -25.80 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.90 Total: 50.26 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.26 Total: 3.08 kcal Total: -87.52 1.23 -86.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135181277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.592 kcal (2) G-P(sol) polarization free energy of solvation -87.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds