Wall clock time and date at job start Tue Mar 31 2020 18:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21622 * 119.99970 * 359.97438 * 9 8 5 11 11 C 1.47169 * 119.99571 * 179.97438 * 9 8 5 12 12 C 1.33719 * 124.66776 * 179.72771 * 11 9 8 13 13 C 1.40431 * 115.60944 * 179.78959 * 12 11 9 14 14 N 1.34861 * 128.53059 * 180.17161 * 13 12 11 15 15 C 1.30753 * 122.23549 * 180.32292 * 14 13 12 16 16 C 1.38970 * 121.42183 * 359.97438 * 15 14 13 17 17 C 1.37868 * 119.16513 * 359.97438 * 16 15 14 18 18 C 1.39982 * 112.46579 * 0.48546 * 13 12 11 19 19 S 1.75506 * 124.67270 * 0.02562 * 11 9 8 20 20 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 21 21 C 1.36936 * 119.99910 * 84.99534 * 20 2 1 22 22 H 1.07996 * 119.99948 * 0.02562 * 21 20 2 23 23 C 1.38815 * 119.99722 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00278 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99762 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47350 * 89.99957 * 25 23 21 27 27 H 1.48498 * 109.46905 * 210.00287 * 25 23 21 28 28 H 1.48505 * 109.47191 * 329.99909 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 33 33 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 34 34 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 35 35 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 36 36 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 37 37 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 38 38 H 1.08000 * 122.19570 * 359.97062 * 12 11 9 39 39 H 1.07998 * 119.28802 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.41435 * 180.02562 * 16 15 14 41 41 H 1.07996 * 120.67799 * 179.97438 * 17 16 15 42 42 H 0.96997 * 120.00110 * 265.00363 * 20 2 1 43 43 H 0.96997 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9382 0.4316 0.5724 11 6 5.5459 2.6227 1.2657 12 6 6.7239 3.1416 0.9033 13 6 6.8877 4.5126 1.1594 14 7 7.9562 5.2937 0.9005 15 6 7.9783 6.5665 1.1991 16 6 6.8923 7.1878 1.8039 17 6 5.7684 6.4437 2.0938 18 6 5.7630 5.0812 1.7685 19 16 4.5246 3.8520 1.9909 20 7 2.0184 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4241 23 6 2.6112 -0.6620 -3.5093 24 7 2.9234 -1.9393 -3.4505 25 14 2.7902 0.2700 -5.1183 26 1 4.1527 0.8542 -5.2031 27 1 2.5790 -0.6610 -6.2557 28 1 1.7808 1.3579 -5.1751 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.6547 -1.0594 3.4192 35 1 3.8002 -2.4820 2.3593 36 1 5.1715 -1.3611 2.5384 37 1 3.3285 1.4128 1.9028 38 1 7.4973 2.5460 0.4414 39 1 8.8596 7.1475 0.9707 40 1 6.9280 8.2403 2.0430 41 1 4.9107 6.9016 2.5640 42 1 2.2490 -1.6317 -1.1527 43 1 3.2460 -2.3967 -4.2427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135181279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:49 Heat of formation + Delta-G solvation = 26.175221 kcal Electronic energy + Delta-G solvation = -25770.350929 eV Core-core repulsion = 22135.096587 eV Total energy + Delta-G solvation = -3635.254342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64597 -39.65133 -37.01521 -35.62997 -34.48377 -32.80276 -32.21114 -31.10024 -29.74012 -28.57952 -26.35392 -25.29751 -24.35243 -23.58958 -22.35740 -20.81246 -20.32228 -19.72523 -18.69007 -17.37958 -17.10397 -16.63283 -16.28365 -15.66495 -15.15810 -15.04646 -14.74166 -14.47576 -14.01671 -13.94217 -13.63636 -13.56410 -13.06722 -13.04597 -12.72231 -12.60565 -12.18334 -12.03347 -11.79867 -11.73166 -11.61250 -11.37226 -11.05337 -10.80308 -10.75423 -10.61252 -10.44289 -10.21354 -9.90888 -9.88911 -9.75653 -9.59249 -9.05135 -8.85393 -8.79198 -8.27238 -6.89642 -5.70229 -2.98216 -0.04254 0.74166 1.03813 1.50559 1.65399 3.10117 3.22390 3.48402 3.51056 3.53270 3.54636 3.93231 4.30392 4.44233 4.58222 4.65149 4.77980 4.98189 5.10441 5.21405 5.37139 5.46255 5.47260 5.57185 5.63392 5.67427 5.72037 5.86578 5.87866 5.92353 6.01277 6.12047 6.19711 6.28225 6.33936 6.42966 6.55978 6.64708 6.75992 6.90277 7.07909 7.54331 7.60913 7.75509 8.31308 8.48214 9.59708 10.16365 10.50668 11.52500 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.003610 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.795030 B = 7753.561575 C = 8896.335167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.110 0.890 7 C -0.162 4.162 8 N -0.707 5.707 9 C 0.586 3.414 10 O -0.509 6.509 11 C -0.188 4.188 12 C -0.045 4.045 13 C 0.120 3.880 14 N -0.450 5.450 15 C 0.123 3.877 16 C -0.157 4.157 17 C -0.037 4.037 18 C -0.191 4.191 19 S 0.145 5.855 20 N -0.720 5.720 21 C -0.235 4.235 22 H 0.067 0.933 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.392 0.608 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 15.845 17.785 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.128 0.872 7 C -0.220 4.220 8 N -0.357 5.357 9 C 0.369 3.631 10 O -0.385 6.385 11 C -0.309 4.309 12 C -0.077 4.077 13 C -0.013 4.013 14 N -0.159 5.159 15 C -0.049 4.049 16 C -0.181 4.181 17 C -0.067 4.067 18 C -0.310 4.310 19 S 0.410 5.590 20 N -0.362 5.362 21 C -0.367 4.367 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.226 0.774 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.501 14.783 17.458 23.142 hybrid contribution 0.452 1.042 -1.011 1.520 sum 3.954 15.824 16.447 23.163 Atomic orbital electron populations 1.22455 0.99446 1.00845 0.99794 1.20229 0.91667 0.95498 0.86553 0.93733 1.22187 0.93427 1.02484 0.98945 1.21138 0.95425 0.79166 1.00246 0.87225 1.22195 1.01637 1.00293 0.97883 1.45844 1.15580 1.12199 1.62106 1.16914 0.82669 0.84775 0.78695 1.90868 1.51043 1.54359 1.42232 1.23970 0.99123 0.98817 1.08981 1.19918 0.97502 0.92219 0.98095 1.18869 0.89963 0.93729 0.98724 1.67600 1.25668 1.06343 1.16253 1.22791 0.98179 0.90047 0.93888 1.22169 0.94044 1.01457 1.00398 1.20921 0.98854 0.90190 0.96762 1.23841 1.00016 0.99679 1.07425 1.84034 1.15770 0.97032 1.62138 1.42389 1.77999 1.10550 1.05251 1.19149 1.36529 0.93647 0.87333 0.91529 1.24682 1.02147 0.95910 0.97917 1.69644 1.50928 1.08564 1.28794 0.86277 0.77817 0.78643 0.84000 1.21749 1.21801 1.20904 0.94711 0.92871 0.93476 0.91963 0.90288 0.93016 0.91414 0.92386 0.77394 0.81749 0.81786 0.83649 0.84084 0.78312 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.22 2.84 -67.93 -0.19 3.02 16 3 H 0.04 0.87 7.56 -51.93 -0.39 0.47 16 4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.09 16 5 C 0.14 2.31 2.52 -67.93 -0.17 2.14 16 6 H 0.11 2.31 7.05 -51.93 -0.37 1.94 16 7 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 8 N -0.71 -10.65 4.44 -54.96 -0.24 -10.89 16 9 C 0.59 10.12 7.76 -12.63 -0.10 10.03 16 10 O -0.51 -10.85 16.39 5.26 0.09 -10.76 16 11 C -0.19 -2.76 6.33 -37.54 -0.24 -2.99 16 12 C -0.05 -0.67 9.82 -40.34 -0.40 -1.07 16 13 C 0.12 1.63 6.95 -85.06 -0.59 1.04 16 14 N -0.45 -5.77 10.41 -11.36 -0.12 -5.88 16 15 C 0.12 1.09 11.15 -17.74 -0.20 0.89 16 16 C -0.16 -1.11 10.11 -39.45 -0.40 -1.51 16 17 C -0.04 -0.31 10.19 -39.02 -0.40 -0.71 16 18 C -0.19 -2.20 6.51 -38.23 -0.25 -2.45 16 19 S 0.14 1.62 22.26 -107.50 -2.39 -0.78 16 20 N -0.72 -17.65 4.49 -53.42 -0.24 -17.89 16 21 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 25 Si 0.90 23.17 29.55 -169.99 -5.02 18.14 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 4.85 7.66 -40.82 -0.31 4.54 16 38 H 0.17 2.50 7.96 -52.49 -0.42 2.08 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.38 10.04 7.80 -40.82 -0.32 9.73 16 43 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -34.66 378.28 -10.10 -44.76 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.00 Total: 10.61 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.59 Total: -5.15 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.12 Total: -62.52 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.39 Total: -0.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.66 -10.10 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135181279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.933 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds