Wall clock time and date at job start Tue Mar 31 2020 18:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21622 * 119.99970 * 359.97438 * 9 8 5 11 11 C 1.47169 * 119.99571 * 179.97438 * 9 8 5 12 12 C 1.33719 * 124.66776 * 179.72771 * 11 9 8 13 13 C 1.40431 * 115.60944 * 179.78959 * 12 11 9 14 14 N 1.34861 * 128.53059 * 180.17161 * 13 12 11 15 15 C 1.30753 * 122.23549 * 180.32292 * 14 13 12 16 16 C 1.38970 * 121.42183 * 359.97438 * 15 14 13 17 17 C 1.37868 * 119.16513 * 359.97438 * 16 15 14 18 18 C 1.39982 * 112.46579 * 0.48546 * 13 12 11 19 19 S 1.75506 * 124.67270 * 0.02562 * 11 9 8 20 20 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 21 21 C 1.36936 * 119.99910 * 84.99534 * 20 2 1 22 22 H 1.07996 * 119.99948 * 0.02562 * 21 20 2 23 23 C 1.38815 * 119.99722 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00278 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99762 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47350 * 89.99957 * 25 23 21 27 27 H 1.48498 * 109.46905 * 210.00287 * 25 23 21 28 28 H 1.48505 * 109.47191 * 329.99909 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 33 33 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 34 34 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 35 35 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 36 36 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 37 37 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 38 38 H 1.08000 * 122.19570 * 359.97062 * 12 11 9 39 39 H 1.07998 * 119.28802 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.41435 * 180.02562 * 16 15 14 41 41 H 1.07996 * 120.67799 * 179.97438 * 17 16 15 42 42 H 0.96997 * 120.00110 * 265.00363 * 20 2 1 43 43 H 0.96997 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9382 0.4316 0.5724 11 6 5.5459 2.6227 1.2657 12 6 6.7239 3.1416 0.9033 13 6 6.8877 4.5126 1.1594 14 7 7.9562 5.2937 0.9005 15 6 7.9783 6.5665 1.1991 16 6 6.8923 7.1878 1.8039 17 6 5.7684 6.4437 2.0938 18 6 5.7630 5.0812 1.7685 19 16 4.5246 3.8520 1.9909 20 7 2.0184 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4241 23 6 2.6112 -0.6620 -3.5093 24 7 2.9234 -1.9393 -3.4505 25 14 2.7902 0.2700 -5.1183 26 1 4.1527 0.8542 -5.2031 27 1 2.5790 -0.6610 -6.2557 28 1 1.7808 1.3579 -5.1751 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.6547 -1.0594 3.4192 35 1 3.8002 -2.4820 2.3593 36 1 5.1715 -1.3611 2.5384 37 1 3.3285 1.4128 1.9028 38 1 7.4973 2.5460 0.4414 39 1 8.8596 7.1475 0.9707 40 1 6.9280 8.2403 2.0430 41 1 4.9107 6.9016 2.5640 42 1 2.2490 -1.6317 -1.1527 43 1 3.2460 -2.3967 -4.2427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135181279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:48 Heat of formation + Delta-G solvation = 2.143233 kcal Electronic energy + Delta-G solvation = -25771.393034 eV Core-core repulsion = 22135.096587 eV Total energy + Delta-G solvation = -3636.296447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51784 -40.91842 -38.45928 -36.67243 -36.09560 -34.07857 -33.53520 -32.45129 -30.75288 -30.36428 -27.62474 -26.31752 -25.65910 -25.12045 -23.36147 -22.09861 -21.50941 -21.21011 -19.74132 -19.20678 -18.17629 -17.67611 -17.26460 -16.85159 -16.59613 -16.25882 -15.92571 -15.62720 -15.56478 -15.48968 -15.13440 -14.54453 -14.32789 -14.27107 -13.96418 -13.63068 -13.42239 -13.30953 -13.20094 -12.96380 -12.82124 -12.77484 -12.66519 -12.33768 -12.28181 -12.19611 -11.85468 -11.58627 -11.53550 -11.45124 -11.30165 -10.93240 -10.52193 -10.22417 -9.81294 -9.13055 -8.95700 -7.93340 -5.18338 -0.98183 0.02459 0.13661 0.54953 0.72425 1.40010 1.43463 1.49607 1.87025 2.00934 2.54709 2.69136 3.08720 3.41313 3.51840 3.63691 3.79485 3.83918 3.98925 4.00265 4.09545 4.34163 4.37219 4.50006 4.51750 4.55969 4.65653 4.69774 4.77667 4.81373 4.90976 4.92856 5.02212 5.04387 5.10348 5.19666 5.32265 5.36607 5.47809 5.55659 5.56122 5.63806 6.30236 6.36032 6.80701 7.04501 7.36146 8.16389 8.35905 9.30448 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.003610 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.795030 B = 7753.561575 C = 8896.335167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.119 4.119 5 C 0.144 3.856 6 H 0.052 0.948 7 C -0.152 4.152 8 N -0.693 5.693 9 C 0.580 3.420 10 O -0.567 6.567 11 C -0.220 4.220 12 C -0.055 4.055 13 C 0.084 3.916 14 N -0.490 5.490 15 C 0.119 3.881 16 C -0.133 4.133 17 C -0.042 4.042 18 C -0.199 4.199 19 S 0.204 5.796 20 N -0.731 5.731 21 C -0.226 4.226 22 H 0.069 0.931 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.958 3.042 26 H -0.299 1.299 27 H -0.293 1.293 28 H -0.267 1.267 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.408 0.592 38 H 0.140 0.860 39 H 0.198 0.802 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.371 0.629 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 19.748 20.496 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.070 0.930 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.366 3.634 10 O -0.447 6.447 11 C -0.341 4.341 12 C -0.088 4.088 13 C -0.047 4.047 14 N -0.200 5.200 15 C -0.053 4.053 16 C -0.156 4.156 17 C -0.072 4.072 18 C -0.318 4.318 19 S 0.470 5.530 20 N -0.372 5.372 21 C -0.358 4.358 22 H 0.087 0.913 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.788 3.212 26 H -0.227 1.227 27 H -0.220 1.220 28 H -0.191 1.191 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.245 0.755 38 H 0.157 0.843 39 H 0.214 0.786 40 H 0.211 0.789 41 H 0.195 0.805 42 H 0.203 0.797 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.607 18.733 20.228 27.616 hybrid contribution 1.070 0.061 -1.741 2.044 sum 2.677 18.794 18.487 26.498 Atomic orbital electron populations 1.22297 0.97425 1.01009 1.00794 1.20542 0.92891 0.95139 0.86062 0.94206 1.22112 0.92190 1.02741 0.98671 1.20997 0.96169 0.79837 0.98945 0.92983 1.22102 1.00459 1.00476 0.97993 1.45722 1.15140 1.12249 1.61318 1.17350 0.82640 0.85654 0.77768 1.90825 1.52709 1.56260 1.44882 1.23732 1.00563 0.98548 1.11277 1.19934 0.97223 0.93455 0.98209 1.18740 0.91608 0.93244 1.01099 1.67571 1.26134 1.08282 1.18000 1.23548 1.00081 0.88963 0.92711 1.22727 0.92230 1.03363 0.97259 1.21472 1.00644 0.88686 0.96407 1.24137 0.99251 1.01221 1.07192 1.83542 1.14035 0.94848 1.60597 1.42594 1.78236 1.10120 1.06230 1.19497 1.34076 0.93745 0.88510 0.91316 1.25402 1.03543 0.96811 1.01097 1.69790 1.53081 1.09998 1.29053 0.85355 0.77437 0.77815 0.80566 1.22688 1.21987 1.19137 0.90334 0.95191 0.93739 0.87237 0.89890 0.89654 0.90580 0.94350 0.75507 0.84254 0.78578 0.78874 0.80530 0.79740 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.49 71.98 0.68 -4.33 16 2 C 0.16 5.92 2.84 44.99 0.13 6.05 16 3 H 0.04 1.50 7.56 -2.39 -0.02 1.48 16 4 C -0.12 -3.33 4.29 30.59 0.13 -3.20 16 5 C 0.14 4.70 2.52 44.99 0.11 4.81 16 6 H 0.05 2.34 7.05 -2.39 -0.02 2.33 16 7 C -0.15 -4.02 9.48 71.98 0.68 -3.33 16 8 N -0.69 -21.05 4.44 -446.05 -1.98 -23.03 16 9 C 0.58 21.38 7.76 86.59 0.67 22.06 16 10 O -0.57 -26.59 16.39 -4.10 -0.07 -26.66 16 11 C -0.22 -6.81 6.33 23.59 0.15 -6.66 16 12 C -0.05 -1.76 9.82 21.78 0.21 -1.55 16 13 C 0.08 2.33 6.95 39.63 0.28 2.61 16 14 N -0.49 -12.49 10.41 -189.84 -1.98 -14.46 16 15 C 0.12 1.78 11.15 85.03 0.95 2.73 16 16 C -0.13 -1.25 10.11 22.36 0.23 -1.02 16 17 C -0.04 -0.54 10.19 22.63 0.23 -0.31 16 18 C -0.20 -4.24 6.51 23.14 0.15 -4.09 16 19 S 0.20 4.24 22.26 -56.49 -1.26 2.98 16 20 N -0.73 -36.66 4.49 -322.93 -1.45 -38.11 16 21 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 22 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -61.89 13.06 21.65 0.28 -61.60 16 25 Si 0.96 48.97 29.55 68.60 2.03 51.00 16 26 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 27 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 9.46 7.66 -92.71 -0.71 8.75 16 38 H 0.14 4.94 7.96 -2.91 -0.02 4.92 16 39 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 41 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.37 20.23 7.80 -92.71 -0.72 19.50 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -83.29 378.28 1.09 -82.20 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.39 Total: 30.10 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.91 Total: -2.43 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -5.13 Total: -137.20 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.07 Total: -26.66 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.26 Total: 2.98 kcal Total: -83.29 1.09 -82.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135181279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.343 kcal (2) G-P(sol) polarization free energy of solvation -83.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds