Wall clock time and date at job start Tue Mar 31 2020 18:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21619 * 119.99893 * 0.02562 * 18 17 2 20 20 C 1.47176 * 120.00013 * 179.97438 * 18 17 2 21 21 C 1.33716 * 124.66832 * 179.72304 * 20 18 17 22 22 C 1.40421 * 115.60700 * 179.79047 * 21 20 18 23 23 N 1.34868 * 128.52889 * 180.17424 * 22 21 20 24 24 C 1.30756 * 122.22955 * 180.32550 * 23 22 21 25 25 C 1.38972 * 121.42755 * 359.97438 * 24 23 22 26 26 C 1.37862 * 119.16638 * 359.97438 * 25 24 23 27 27 C 1.39992 * 112.46606 * 0.49046 * 22 21 20 28 28 S 1.75504 * 124.66699 * 0.02587 * 20 18 17 29 29 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 31 31 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 33 33 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 34 34 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 36 36 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 37 37 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 38 38 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 39 39 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 40 40 H 1.08002 * 122.18971 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.28604 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.41256 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.68137 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8573 1.1616 2.4119 20 6 2.6370 -0.7122 3.5590 21 6 2.8051 -0.1367 4.7542 22 6 3.2796 -0.9795 5.7723 23 7 3.5367 -0.6774 7.0613 24 6 3.9854 -1.5655 7.9096 25 6 4.2228 -2.8797 7.5250 26 6 3.9787 -3.2525 6.2204 27 6 3.4999 -2.2875 5.3247 28 16 3.0882 -2.4072 3.6188 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0277 0.0005 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 5.1507 -1.1479 -2.6701 35 1 3.7721 -2.2742 -2.6699 36 1 3.6263 -0.6888 -3.4657 37 1 3.6646 -2.0586 0.2387 38 1 4.4079 -2.8955 1.5989 39 1 2.2489 -1.6318 1.1527 40 1 2.5874 0.9071 4.9259 41 1 4.1747 -1.2717 8.9314 42 1 4.5931 -3.6000 8.2394 43 1 4.1550 -4.2671 5.8950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135181280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:53 Heat of formation + Delta-G solvation = 35.907987 kcal Electronic energy + Delta-G solvation = -27077.812485 eV Core-core repulsion = 23442.980187 eV Total energy + Delta-G solvation = -3634.832297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.88351 -39.37179 -37.11487 -34.99680 -34.42569 -32.71989 -32.03883 -30.94404 -29.19176 -28.46413 -26.51206 -24.67084 -23.79396 -23.59129 -21.88803 -20.55836 -20.47658 -19.61381 -17.99938 -17.64852 -16.58917 -16.23110 -15.70338 -15.34592 -15.18621 -14.60964 -14.40533 -14.25508 -13.89139 -13.74319 -13.50838 -13.22295 -13.08403 -12.87930 -12.34010 -12.28806 -12.12767 -11.92278 -11.84938 -11.71632 -11.31519 -11.05154 -10.87942 -10.71165 -10.53720 -10.45313 -10.27810 -10.09332 -9.99501 -9.56611 -9.36868 -9.18716 -9.03819 -8.62812 -8.21075 -7.53715 -6.87193 -6.34881 -3.20768 0.65427 1.48484 1.95769 2.30481 2.41604 3.42494 3.46965 3.48742 3.61955 3.71876 4.20399 4.50630 4.58778 4.90746 5.04506 5.16380 5.20868 5.26588 5.30639 5.39696 5.42412 5.49999 5.68438 5.69286 5.79626 5.83754 5.94972 5.95824 6.04631 6.17240 6.21042 6.21196 6.31053 6.32803 6.41128 6.47577 6.59639 6.65895 6.84857 6.93111 6.95597 7.58187 7.90543 8.26482 8.46711 8.64654 8.92855 9.76892 9.91894 11.09744 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.005470 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.841045 B = 5117.210267 C = 6646.060785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.171 3.829 6 H 0.053 0.947 7 C -0.162 4.162 8 N -0.726 5.726 9 C -0.288 4.288 10 H 0.068 0.932 11 C -0.053 4.053 12 N -0.903 5.903 13 Si 1.070 2.930 14 H -0.283 1.283 15 H -0.295 1.295 16 H -0.295 1.295 17 N -0.698 5.698 18 C 0.599 3.401 19 O -0.544 6.544 20 C -0.222 4.222 21 C -0.071 4.071 22 C 0.105 3.895 23 N -0.459 5.459 24 C 0.113 3.887 25 C -0.178 4.178 26 C -0.028 4.028 27 C -0.215 4.215 28 S 0.272 5.728 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.360 0.640 38 H 0.250 0.750 39 H 0.395 0.605 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 -2.791 1.738 7.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.062 3.938 6 H 0.071 0.929 7 C -0.222 4.222 8 N -0.369 5.369 9 C -0.419 4.419 10 H 0.086 0.914 11 C -0.250 4.250 12 N -0.551 5.551 13 Si 0.900 3.100 14 H -0.208 1.208 15 H -0.222 1.222 16 H -0.223 1.223 17 N -0.350 5.350 18 C 0.385 3.615 19 O -0.423 6.423 20 C -0.346 4.346 21 C -0.106 4.106 22 C -0.028 4.028 23 N -0.168 5.168 24 C -0.062 4.062 25 C -0.203 4.203 26 C -0.058 4.058 27 C -0.337 4.337 28 S 0.545 5.455 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.195 0.805 38 H 0.065 0.935 39 H 0.232 0.768 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.153 0.847 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.128 -2.411 1.662 6.792 hybrid contribution -0.591 -0.042 -0.340 0.683 sum -6.718 -2.453 1.323 7.273 Atomic orbital electron populations 1.22213 0.95834 1.01815 1.02289 1.20868 0.92857 0.97809 0.83904 0.89463 1.22249 0.97647 1.00666 0.96883 1.20298 0.89692 0.96037 0.87765 0.92897 1.22377 1.01699 1.00298 0.97860 1.42622 1.18971 1.39775 1.35547 1.20242 0.93498 1.14964 1.13200 0.91425 1.25603 1.05624 0.97877 0.95860 1.71041 1.12392 1.29549 1.42133 0.83333 0.74735 0.75617 0.76264 1.20833 1.22236 1.22263 1.45848 1.66479 1.13698 1.08942 1.16919 0.76870 0.85850 0.81861 1.90728 1.51658 1.15026 1.84921 1.23750 1.11716 1.01122 0.98042 1.19453 1.00668 1.00870 0.89598 1.18627 1.02084 0.90549 0.91498 1.67458 1.11129 1.36574 1.01647 1.22510 0.95701 0.89388 0.98620 1.21927 1.03798 0.98123 0.96448 1.20819 0.94571 0.98277 0.92097 1.24044 1.10059 0.99351 1.00198 1.84593 1.57658 1.03669 0.99542 0.92124 0.91820 0.92717 0.90245 0.91765 0.92690 0.93623 0.94188 0.80544 0.93549 0.76845 0.83496 0.82850 0.84679 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.15 0.35 -1.77 16 2 C 0.15 2.36 2.57 -67.93 -0.17 2.18 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.14 -1.92 4.43 -26.73 -0.12 -2.04 16 5 C 0.17 3.03 2.89 -67.93 -0.20 2.83 16 6 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 7 C -0.16 -2.63 9.49 37.16 0.35 -2.27 16 8 N -0.73 -15.51 3.84 -53.43 -0.21 -15.72 16 9 C -0.29 -7.20 9.93 -15.06 -0.15 -7.35 16 10 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 11 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 12 N -0.90 -23.05 11.56 55.49 0.64 -22.41 16 13 Si 1.07 24.90 29.92 -169.99 -5.09 19.81 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 17 N -0.70 -12.56 3.80 -54.97 -0.21 -12.77 16 18 C 0.60 12.45 7.76 -12.63 -0.10 12.35 16 19 O -0.54 -12.45 16.39 5.26 0.09 -12.37 16 20 C -0.22 -4.57 6.33 -37.54 -0.24 -4.81 16 21 C -0.07 -1.46 9.82 -40.35 -0.40 -1.86 16 22 C 0.10 2.10 6.95 -85.05 -0.59 1.51 16 23 N -0.46 -8.51 10.41 -11.35 -0.12 -8.63 16 24 C 0.11 1.66 11.15 -17.74 -0.20 1.46 16 25 C -0.18 -2.42 10.11 -39.45 -0.40 -2.82 16 26 C -0.03 -0.44 10.19 -39.02 -0.40 -0.84 16 27 C -0.22 -4.09 6.51 -38.23 -0.25 -4.34 16 28 S 0.27 5.20 18.55 -107.50 -1.99 3.20 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.36 7.68 4.54 -40.82 -0.19 7.49 16 38 H 0.25 6.06 5.22 -40.82 -0.21 5.85 16 39 H 0.39 7.00 5.56 -40.82 -0.23 6.78 16 40 H 0.15 2.98 7.96 -52.49 -0.42 2.56 16 41 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -29.85 364.98 -9.69 -39.55 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.71 Total: 13.07 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.60 Total: -9.24 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.11 Total: -59.53 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.81 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.99 Total: 3.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.85 -9.69 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135181280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.453 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds