Wall clock time and date at job start Tue Mar 31 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21619 * 119.99893 * 0.02562 * 18 17 2 20 20 C 1.47176 * 120.00013 * 179.97438 * 18 17 2 21 21 C 1.33716 * 124.66832 * 179.72304 * 20 18 17 22 22 C 1.40421 * 115.60700 * 179.79047 * 21 20 18 23 23 N 1.34868 * 128.52889 * 180.17424 * 22 21 20 24 24 C 1.30756 * 122.22955 * 180.32550 * 23 22 21 25 25 C 1.38972 * 121.42755 * 359.97438 * 24 23 22 26 26 C 1.37862 * 119.16638 * 359.97438 * 25 24 23 27 27 C 1.39992 * 112.46606 * 0.49046 * 22 21 20 28 28 S 1.75504 * 124.66699 * 0.02587 * 20 18 17 29 29 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 31 31 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 33 33 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 34 34 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 36 36 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 37 37 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 38 38 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 39 39 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 40 40 H 1.08002 * 122.18971 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.28604 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.41256 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.68137 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8573 1.1616 2.4119 20 6 2.6370 -0.7122 3.5590 21 6 2.8051 -0.1367 4.7542 22 6 3.2796 -0.9795 5.7723 23 7 3.5367 -0.6774 7.0613 24 6 3.9854 -1.5655 7.9096 25 6 4.2228 -2.8797 7.5250 26 6 3.9787 -3.2525 6.2204 27 6 3.4999 -2.2875 5.3247 28 16 3.0882 -2.4072 3.6188 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0277 0.0005 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 5.1507 -1.1479 -2.6701 35 1 3.7721 -2.2742 -2.6699 36 1 3.6263 -0.6888 -3.4657 37 1 3.6646 -2.0586 0.2387 38 1 4.4079 -2.8955 1.5989 39 1 2.2489 -1.6318 1.1527 40 1 2.5874 0.9071 4.9259 41 1 4.1747 -1.2717 8.9314 42 1 4.5931 -3.6000 8.2394 43 1 4.1550 -4.2671 5.8950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135181280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:52 Heat of formation + Delta-G solvation = 18.198525 kcal Electronic energy + Delta-G solvation = -27078.580425 eV Core-core repulsion = 23442.980187 eV Total energy + Delta-G solvation = -3635.600237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31752 -40.84192 -38.59972 -36.47518 -35.99076 -34.33371 -33.35173 -32.38468 -30.62310 -29.99018 -27.71057 -26.11409 -25.54657 -24.94587 -23.26239 -21.99276 -21.84457 -21.11864 -19.53069 -19.36954 -17.96194 -17.65025 -17.10337 -16.83844 -16.62903 -16.17462 -15.94617 -15.68489 -15.51791 -15.30246 -15.05989 -14.54864 -14.45835 -14.14015 -13.78351 -13.57578 -13.46703 -13.26286 -13.07533 -12.92420 -12.83702 -12.59427 -12.53003 -12.24935 -12.07749 -11.85049 -11.82644 -11.67980 -11.37480 -11.21039 -11.11289 -10.92468 -10.38253 -10.13601 -9.61867 -9.13874 -8.47786 -8.24687 -5.10564 -0.77085 0.18299 0.47268 0.85743 0.91115 1.53803 1.60529 1.74557 1.95643 2.19980 2.67071 2.84639 3.24772 3.49049 3.63902 3.74545 3.80252 3.89006 3.98782 4.04236 4.12083 4.24241 4.45307 4.49576 4.56117 4.67641 4.70092 4.73864 4.76922 4.79516 4.85502 4.97072 5.02179 5.05777 5.13397 5.16632 5.27970 5.30012 5.49955 5.55133 5.68982 5.71421 6.37656 6.63526 6.95080 7.06618 7.18817 8.03481 8.16389 9.23298 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.005470 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.841045 B = 5117.210267 C = 6646.060785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.122 4.122 5 C 0.164 3.836 6 H 0.029 0.971 7 C -0.152 4.152 8 N -0.731 5.731 9 C -0.310 4.310 10 H 0.047 0.953 11 C -0.084 4.084 12 N -0.922 5.922 13 Si 1.098 2.902 14 H -0.289 1.289 15 H -0.283 1.283 16 H -0.306 1.306 17 N -0.687 5.687 18 C 0.591 3.409 19 O -0.576 6.576 20 C -0.239 4.239 21 C -0.079 4.079 22 C 0.078 3.922 23 N -0.488 5.488 24 C 0.115 3.885 25 C -0.147 4.147 26 C -0.047 4.047 27 C -0.225 4.225 28 S 0.276 5.724 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.359 0.641 38 H 0.252 0.748 39 H 0.397 0.603 40 H 0.138 0.862 41 H 0.200 0.800 42 H 0.189 0.811 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -4.628 2.928 9.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.047 0.953 7 C -0.211 4.211 8 N -0.376 5.376 9 C -0.442 4.442 10 H 0.065 0.935 11 C -0.279 4.279 12 N -0.571 5.571 13 Si 0.928 3.072 14 H -0.215 1.215 15 H -0.210 1.210 16 H -0.234 1.234 17 N -0.337 5.337 18 C 0.378 3.622 19 O -0.458 6.458 20 C -0.362 4.362 21 C -0.115 4.115 22 C -0.052 4.052 23 N -0.197 5.197 24 C -0.059 4.059 25 C -0.171 4.171 26 C -0.077 4.077 27 C -0.345 4.345 28 S 0.549 5.451 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.193 0.807 38 H 0.066 0.934 39 H 0.234 0.766 40 H 0.156 0.844 41 H 0.216 0.784 42 H 0.206 0.794 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.836 -4.263 2.833 8.540 hybrid contribution -0.442 0.522 -0.334 0.761 sum -7.279 -3.741 2.499 8.557 Atomic orbital electron populations 1.22127 0.93192 1.03045 1.02734 1.21099 0.94854 0.96431 0.83653 0.92105 1.22183 0.94777 1.01693 0.97324 1.20476 0.92077 0.94393 0.87433 0.95327 1.22233 1.00097 1.00840 0.97968 1.42569 1.18088 1.40180 1.36713 1.20118 0.95230 1.15035 1.13836 0.93473 1.26162 1.07101 0.98259 0.96410 1.71041 1.13129 1.30195 1.42784 0.82938 0.73836 0.74458 0.75954 1.21498 1.20953 1.23417 1.45904 1.65284 1.13674 1.08867 1.17125 0.76719 0.85637 0.82752 1.90692 1.53299 1.16255 1.85568 1.23892 1.12136 1.02128 0.98042 1.19619 1.00710 1.00844 0.90358 1.18669 1.03345 0.90886 0.92344 1.67509 1.12603 1.38294 1.01338 1.23447 0.93112 0.89517 0.99809 1.22559 1.00016 0.98464 0.96049 1.21310 0.94753 0.98876 0.92736 1.24334 1.10025 0.99866 1.00320 1.84388 1.58114 1.02191 1.00393 0.94154 0.88905 0.91026 0.86563 0.90294 0.95306 0.93188 0.90965 0.80683 0.93416 0.76586 0.84396 0.78359 0.79425 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.48 71.98 0.68 -3.07 16 2 C 0.14 4.47 2.57 44.99 0.12 4.59 16 3 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 4 C -0.12 -3.23 4.43 30.59 0.14 -3.10 16 5 C 0.16 5.83 2.89 44.99 0.13 5.96 16 6 H 0.03 1.14 8.08 -2.39 -0.02 1.13 16 7 C -0.15 -4.77 9.49 71.98 0.68 -4.09 16 8 N -0.73 -32.11 3.84 -322.95 -1.24 -33.35 16 9 C -0.31 -16.16 9.93 84.03 0.83 -15.33 16 10 H 0.05 2.57 7.83 -2.91 -0.02 2.55 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 12 N -0.92 -47.96 11.56 21.65 0.25 -47.71 16 13 Si 1.10 51.80 29.92 68.60 2.05 53.85 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 17 N -0.69 -25.37 3.80 -446.06 -1.69 -27.06 16 18 C 0.59 25.76 7.76 86.59 0.67 26.44 16 19 O -0.58 -27.85 16.39 -4.09 -0.07 -27.92 16 20 C -0.24 -10.25 6.33 23.59 0.15 -10.11 16 21 C -0.08 -3.43 9.82 21.77 0.21 -3.21 16 22 C 0.08 3.14 6.95 39.63 0.28 3.42 16 23 N -0.49 -17.38 10.41 -189.83 -1.98 -19.35 16 24 C 0.12 2.93 11.15 85.03 0.95 3.88 16 25 C -0.15 -3.26 10.11 22.36 0.23 -3.03 16 26 C -0.05 -1.35 10.19 22.63 0.23 -1.12 16 27 C -0.22 -8.37 6.51 23.15 0.15 -8.22 16 28 S 0.28 10.69 18.55 -56.49 -1.05 9.65 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.36 15.61 4.54 -92.71 -0.42 15.19 16 38 H 0.25 12.45 5.22 -92.71 -0.48 11.97 16 39 H 0.40 14.35 5.56 -92.71 -0.52 13.84 16 40 H 0.14 5.99 7.96 -2.91 -0.02 5.97 16 41 H 0.20 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -69.68 364.98 2.59 -67.10 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.39 Total: 35.78 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 5.92 Total: -10.98 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -4.66 Total: -127.48 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.07 Total: -27.92 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Atomic # 16 Polarization: 10.69 SS G_CDS: -1.05 Total: 9.65 kcal Total: -69.68 2.59 -67.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135181280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.296 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds