Wall clock time and date at job start Tue Mar 31 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.53008 * 109.46844 * 239.99999 * 2 1 3 5 5 C 1.52995 * 109.46987 * 174.99747 * 4 2 1 6 6 H 1.09001 * 109.47020 * 55.00407 * 5 4 2 7 7 C 1.52997 * 109.46966 * 175.00075 * 5 4 2 8 8 N 1.46499 * 109.47695 * 295.00056 * 5 4 2 9 9 C 1.34777 * 120.00195 * 154.99708 * 8 5 4 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 5 11 11 C 1.47564 * 119.99835 * 180.27874 * 9 8 5 12 12 C 1.40112 * 120.58999 * 359.72482 * 11 9 8 13 13 N 1.30619 * 121.17081 * 180.02562 * 12 11 9 14 14 C 1.34904 * 122.44779 * 0.02562 * 13 12 11 15 15 C 1.40624 * 128.45885 * 179.97438 * 14 13 12 16 16 C 1.32285 * 115.90728 * 179.97438 * 15 14 13 17 17 S 1.75500 * 110.83795 * 0.02562 * 16 15 14 18 18 C 1.40092 * 119.27309 * 359.97438 * 14 13 12 19 19 C 1.39370 * 119.75107 * 359.72066 * 18 14 13 20 20 N 1.46495 * 109.47266 * 120.00264 * 2 1 3 21 21 C 1.36938 * 119.99741 * 274.99363 * 20 2 1 22 22 H 1.07996 * 120.00385 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99575 * 179.97438 * 21 20 2 24 24 N 1.31618 * 120.00656 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99680 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47152 * 90.00491 * 25 23 21 27 27 H 1.48510 * 109.47180 * 210.00203 * 25 23 21 28 28 H 1.48499 * 109.47426 * 330.00158 * 25 23 21 29 29 H 1.08991 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46691 * 300.00376 * 1 2 3 31 31 H 1.08998 * 109.47327 * 59.99518 * 1 2 3 32 32 H 1.09001 * 109.46394 * 55.00452 * 4 2 1 33 33 H 1.08994 * 109.47078 * 295.00266 * 4 2 1 34 34 H 1.08993 * 109.47268 * 60.00340 * 7 5 4 35 35 H 1.09006 * 109.47495 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47338 * 300.00179 * 7 5 4 37 37 H 0.97000 * 120.00069 * 335.00436 * 8 5 4 38 38 H 1.07995 * 119.41556 * 0.02698 * 12 11 9 39 39 H 1.08000 * 122.04542 * 359.97438 * 15 14 13 40 40 H 1.08001 * 124.57991 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.73239 * 180.27867 * 19 18 14 42 42 H 0.96999 * 120.00155 * 95.00293 * 20 2 1 43 43 H 0.96994 * 120.00302 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9953 -0.9923 -0.3870 7 6 4.0849 -1.4383 -2.4926 8 7 3.9479 0.7893 -1.4926 9 6 5.1612 1.2134 -1.0869 10 8 5.9379 0.4318 -0.5729 11 6 5.5447 2.6276 -1.2614 12 6 4.6596 3.5388 -1.8525 13 7 4.9875 4.7929 -2.0130 14 6 6.1829 5.2837 -1.6257 15 6 6.6654 6.6000 -1.7363 16 6 7.8857 6.8093 -1.2706 17 16 8.5713 5.3273 -0.6275 18 6 7.1146 4.4254 -1.0275 19 6 6.7942 3.0826 -0.8355 20 7 2.0183 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3756 22 1 1.8921 1.0403 2.4243 23 6 2.6115 -0.6621 3.5091 24 7 2.9244 -1.9391 3.4501 25 14 2.7894 0.2697 5.1184 26 1 1.5214 0.1784 5.8860 27 1 3.8937 -0.3237 5.9145 28 1 3.0945 1.6949 4.8341 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -0.2616 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 3.6544 -1.0593 -3.4194 35 1 5.1713 -1.3618 -2.5384 36 1 3.7999 -2.4819 -2.3597 37 1 3.3284 1.4129 -1.9029 38 1 3.6889 3.1981 -2.1813 39 1 6.0757 7.3915 -2.1747 40 1 8.3917 7.7634 -1.2843 41 1 7.4987 2.4080 -0.3719 42 1 2.2491 -1.6318 1.1525 43 1 3.2477 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135187936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:05 Heat of formation + Delta-G solvation = 27.166721 kcal Electronic energy + Delta-G solvation = -25927.481199 eV Core-core repulsion = 22292.269852 eV Total energy + Delta-G solvation = -3635.211347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84291 -39.32426 -36.89662 -35.87798 -34.52003 -32.68862 -32.23298 -31.18598 -29.52735 -28.57219 -26.33228 -25.29530 -24.01928 -23.58473 -22.18697 -21.15415 -20.39451 -19.73079 -18.68462 -17.26921 -17.13014 -16.79791 -16.35391 -15.70034 -15.14136 -14.76766 -14.52035 -14.31046 -14.14378 -13.91804 -13.63883 -13.36775 -13.13462 -12.98099 -12.85781 -12.68605 -12.17109 -12.03029 -11.92722 -11.72802 -11.60247 -11.39799 -11.04847 -10.81906 -10.67173 -10.59716 -10.43213 -10.21300 -10.09053 -9.88628 -9.59922 -9.50831 -9.03943 -8.85719 -8.75007 -8.30398 -6.89925 -5.70865 -2.98704 -0.04708 0.81334 1.07147 1.54005 1.67659 2.97809 3.27458 3.46805 3.52266 3.53674 3.70890 3.77156 4.35795 4.54767 4.62770 4.64906 4.76383 4.89812 5.08673 5.23116 5.39488 5.40175 5.48098 5.56158 5.62999 5.67907 5.72330 5.83724 5.88616 5.93686 6.02311 6.12938 6.17031 6.29699 6.35466 6.44382 6.57397 6.68614 6.78674 6.91883 7.08711 7.51372 7.68434 7.74884 8.40079 8.47663 9.59076 10.16214 10.50324 11.51882 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003493 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.275048 B = 8013.218379 C = 9275.234156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.565 3.435 10 O -0.524 6.524 11 C -0.168 4.168 12 C 0.159 3.841 13 N -0.461 5.461 14 C 0.140 3.860 15 C -0.118 4.118 16 C -0.169 4.169 17 S 0.123 5.877 18 C -0.209 4.209 19 C 0.029 3.971 20 N -0.720 5.720 21 C -0.234 4.234 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.393 0.607 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.154 0.846 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 13.979 -15.934 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.220 4.220 8 N -0.359 5.359 9 C 0.350 3.650 10 O -0.401 6.401 11 C -0.177 4.177 12 C -0.013 4.013 13 N -0.169 5.169 14 C 0.006 3.994 15 C -0.148 4.148 16 C -0.306 4.306 17 S 0.387 5.613 18 C -0.326 4.326 19 C -0.002 4.002 20 N -0.362 5.362 21 C -0.366 4.366 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.195 0.805 41 H 0.171 0.829 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.529 13.855 -15.129 22.217 hybrid contribution -1.012 0.298 0.593 1.210 sum 7.517 14.153 -14.536 21.635 Atomic orbital electron populations 1.22458 0.99497 1.00824 0.99803 1.20230 0.91611 0.95524 0.86555 0.93664 1.22183 0.93536 1.02402 0.98897 1.21095 0.95284 0.79522 1.00088 0.87390 1.22186 1.01552 1.00260 0.97956 1.45863 1.15851 1.12019 1.62131 1.17700 0.82502 0.86288 0.78482 1.90827 1.51079 1.55615 1.42536 1.21007 0.96191 0.95966 1.04555 1.22848 0.98486 0.87479 0.92520 1.67561 1.16439 1.15349 1.17556 1.19238 0.90166 0.93467 0.96483 1.19642 0.96114 0.95435 1.03650 1.25427 0.98844 1.02699 1.03629 1.84378 1.14284 0.99330 1.63352 1.23547 1.00875 0.99137 1.09033 1.21024 0.95358 0.92068 0.91702 1.42391 1.77976 1.10560 1.05259 1.19153 1.36393 0.93668 0.87347 0.91534 1.24678 1.02207 0.95920 0.97888 1.69639 1.50968 1.08611 1.28744 0.86276 0.77234 0.78869 0.84342 1.21829 1.21802 1.20942 0.93514 0.92917 0.94670 0.91930 0.90432 0.93037 0.92487 0.91576 0.77188 0.81645 0.82828 0.80508 0.82859 0.78329 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.92 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.24 2.52 -67.94 -0.17 2.07 16 6 H 0.11 2.23 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 8 N -0.71 -9.98 4.40 -54.84 -0.24 -10.22 16 9 C 0.57 9.25 7.74 -12.46 -0.10 9.15 16 10 O -0.52 -10.73 16.07 5.28 0.08 -10.65 16 11 C -0.17 -2.36 5.89 -104.87 -0.62 -2.98 16 12 C 0.16 1.93 10.69 -17.36 -0.19 1.75 16 13 N -0.46 -5.99 10.39 -11.01 -0.11 -6.11 16 14 C 0.14 1.74 6.97 -84.92 -0.59 1.15 16 15 C -0.12 -1.11 10.16 -40.61 -0.41 -1.52 16 16 C -0.17 -1.29 11.08 28.81 0.32 -0.97 16 17 S 0.12 1.16 23.29 -107.50 -2.50 -1.35 16 18 C -0.21 -2.59 6.49 -38.47 -0.25 -2.84 16 19 C 0.03 0.39 9.73 -38.64 -0.38 0.02 16 20 N -0.72 -17.47 4.49 -53.43 -0.24 -17.71 16 21 C -0.23 -6.49 9.93 -15.06 -0.15 -6.64 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 25 Si 0.90 23.02 29.55 -169.99 -5.02 18.00 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.39 4.27 6.66 -40.82 -0.27 4.00 16 38 H 0.17 1.49 6.41 -52.49 -0.34 1.15 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.15 2.07 7.72 -52.49 -0.41 1.67 16 42 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -34.23 375.95 -9.74 -43.97 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.86 Total: 10.65 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.23 Total: -4.56 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.13 Total: -61.73 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.50 Total: -1.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.23 -9.74 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135187936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.138 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds