Wall clock time and date at job start Tue Mar 31 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.53008 * 109.46844 * 239.99999 * 2 1 3 5 5 C 1.52995 * 109.46987 * 174.99747 * 4 2 1 6 6 H 1.09001 * 109.47020 * 55.00407 * 5 4 2 7 7 C 1.52997 * 109.46966 * 175.00075 * 5 4 2 8 8 N 1.46499 * 109.47695 * 295.00056 * 5 4 2 9 9 C 1.34777 * 120.00195 * 154.99708 * 8 5 4 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 5 11 11 C 1.47564 * 119.99835 * 180.27874 * 9 8 5 12 12 C 1.40112 * 120.58999 * 359.72482 * 11 9 8 13 13 N 1.30619 * 121.17081 * 180.02562 * 12 11 9 14 14 C 1.34904 * 122.44779 * 0.02562 * 13 12 11 15 15 C 1.40624 * 128.45885 * 179.97438 * 14 13 12 16 16 C 1.32285 * 115.90728 * 179.97438 * 15 14 13 17 17 S 1.75500 * 110.83795 * 0.02562 * 16 15 14 18 18 C 1.40092 * 119.27309 * 359.97438 * 14 13 12 19 19 C 1.39370 * 119.75107 * 359.72066 * 18 14 13 20 20 N 1.46495 * 109.47266 * 120.00264 * 2 1 3 21 21 C 1.36938 * 119.99741 * 274.99363 * 20 2 1 22 22 H 1.07996 * 120.00385 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99575 * 179.97438 * 21 20 2 24 24 N 1.31618 * 120.00656 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99680 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47152 * 90.00491 * 25 23 21 27 27 H 1.48510 * 109.47180 * 210.00203 * 25 23 21 28 28 H 1.48499 * 109.47426 * 330.00158 * 25 23 21 29 29 H 1.08991 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46691 * 300.00376 * 1 2 3 31 31 H 1.08998 * 109.47327 * 59.99518 * 1 2 3 32 32 H 1.09001 * 109.46394 * 55.00452 * 4 2 1 33 33 H 1.08994 * 109.47078 * 295.00266 * 4 2 1 34 34 H 1.08993 * 109.47268 * 60.00340 * 7 5 4 35 35 H 1.09006 * 109.47495 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47338 * 300.00179 * 7 5 4 37 37 H 0.97000 * 120.00069 * 335.00436 * 8 5 4 38 38 H 1.07995 * 119.41556 * 0.02698 * 12 11 9 39 39 H 1.08000 * 122.04542 * 359.97438 * 15 14 13 40 40 H 1.08001 * 124.57991 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.73239 * 180.27867 * 19 18 14 42 42 H 0.96999 * 120.00155 * 95.00293 * 20 2 1 43 43 H 0.96994 * 120.00302 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9953 -0.9923 -0.3870 7 6 4.0849 -1.4383 -2.4926 8 7 3.9479 0.7893 -1.4926 9 6 5.1612 1.2134 -1.0869 10 8 5.9379 0.4318 -0.5729 11 6 5.5447 2.6276 -1.2614 12 6 4.6596 3.5388 -1.8525 13 7 4.9875 4.7929 -2.0130 14 6 6.1829 5.2837 -1.6257 15 6 6.6654 6.6000 -1.7363 16 6 7.8857 6.8093 -1.2706 17 16 8.5713 5.3273 -0.6275 18 6 7.1146 4.4254 -1.0275 19 6 6.7942 3.0826 -0.8355 20 7 2.0183 -0.6906 1.1961 21 6 2.1492 -0.0075 2.3756 22 1 1.8921 1.0403 2.4243 23 6 2.6115 -0.6621 3.5091 24 7 2.9244 -1.9391 3.4501 25 14 2.7894 0.2697 5.1184 26 1 1.5214 0.1784 5.8860 27 1 3.8937 -0.3237 5.9145 28 1 3.0945 1.6949 4.8341 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -0.2616 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 3.6544 -1.0593 -3.4194 35 1 5.1713 -1.3618 -2.5384 36 1 3.7999 -2.4819 -2.3597 37 1 3.3284 1.4129 -1.9029 38 1 3.6889 3.1981 -2.1813 39 1 6.0757 7.3915 -2.1747 40 1 8.3917 7.7634 -1.2843 41 1 7.4987 2.4080 -0.3719 42 1 2.2491 -1.6318 1.1525 43 1 3.2477 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135187936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:04 Heat of formation + Delta-G solvation = 3.984128 kcal Electronic energy + Delta-G solvation = -25928.486471 eV Core-core repulsion = 22292.269852 eV Total energy + Delta-G solvation = -3636.216620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84899 -40.50600 -38.33583 -36.73891 -36.11238 -34.05068 -33.68758 -32.46573 -30.64528 -30.26780 -27.57994 -26.24830 -25.65017 -24.94666 -23.18974 -22.25670 -21.57257 -21.19532 -19.75694 -19.19146 -18.12710 -17.85393 -17.23928 -16.97406 -16.61332 -16.22823 -15.66086 -15.59857 -15.53228 -15.16218 -14.99935 -14.52643 -14.39083 -14.23780 -13.99915 -13.66077 -13.58281 -13.35344 -13.17276 -12.93402 -12.80496 -12.78148 -12.66625 -12.24569 -12.21240 -12.11472 -11.81586 -11.63078 -11.54901 -11.40709 -11.29724 -10.90708 -10.59194 -10.13219 -9.81423 -9.09746 -8.93711 -7.92078 -5.16779 -0.96380 -0.14574 0.27123 0.80734 0.84948 1.41357 1.43174 1.50166 1.86500 2.11690 2.55593 2.66985 2.94385 3.42485 3.46598 3.54616 3.66643 3.83469 3.92004 4.02664 4.05187 4.16089 4.39380 4.42705 4.56665 4.63501 4.70013 4.75496 4.82012 4.85908 4.89377 4.95820 5.04390 5.06598 5.13345 5.24755 5.27237 5.37557 5.43097 5.51320 5.62341 5.66626 6.31654 6.51034 6.59297 7.20994 7.37472 8.18563 8.37636 9.31752 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003493 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.275048 B = 8013.218379 C = 9275.234156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.049 0.951 7 C -0.152 4.152 8 N -0.693 5.693 9 C 0.562 3.438 10 O -0.579 6.579 11 C -0.189 4.189 12 C 0.166 3.834 13 N -0.474 5.474 14 C 0.133 3.867 15 C -0.139 4.139 16 C -0.138 4.138 17 S 0.135 5.865 18 C -0.234 4.234 19 C 0.018 3.982 20 N -0.731 5.731 21 C -0.224 4.224 22 H 0.068 0.932 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.958 3.042 26 H -0.284 1.284 27 H -0.300 1.300 28 H -0.276 1.276 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.196 0.804 39 H 0.176 0.824 40 H 0.220 0.780 41 H 0.141 0.859 42 H 0.370 0.630 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 17.002 -18.090 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.068 0.932 7 C -0.210 4.210 8 N -0.345 5.345 9 C 0.349 3.651 10 O -0.460 6.460 11 C -0.197 4.197 12 C -0.006 4.006 13 N -0.182 5.182 14 C -0.001 4.001 15 C -0.169 4.169 16 C -0.275 4.275 17 S 0.399 5.601 18 C -0.351 4.351 19 C -0.012 4.012 20 N -0.372 5.372 21 C -0.357 4.357 22 H 0.086 0.914 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.788 3.212 26 H -0.212 1.212 27 H -0.227 1.227 28 H -0.202 1.202 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.250 0.750 38 H 0.213 0.787 39 H 0.193 0.807 40 H 0.237 0.763 41 H 0.159 0.841 42 H 0.202 0.798 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.615 16.937 -17.341 25.408 hybrid contribution -0.679 -0.496 1.186 1.454 sum 6.936 16.441 -16.155 24.070 Atomic orbital electron populations 1.22309 0.97691 1.00881 1.00752 1.20550 0.92679 0.95312 0.86059 0.93865 1.22099 0.92443 1.02493 0.98617 1.20911 0.95876 0.80376 0.98654 0.93229 1.22089 1.00400 1.00334 0.98151 1.45724 1.15488 1.11955 1.61329 1.18102 0.82492 0.86955 0.77542 1.90794 1.52756 1.57224 1.45211 1.20845 0.97160 0.94909 1.06831 1.23213 0.99022 0.86952 0.91455 1.67641 1.16955 1.15396 1.18229 1.19819 0.89918 0.94734 0.95652 1.19876 0.97150 0.94672 1.05157 1.25957 0.97869 1.03182 1.00447 1.84399 1.12851 0.99937 1.62953 1.23738 1.02696 0.98753 1.09888 1.21065 0.95391 0.92925 0.91833 1.42600 1.78190 1.10118 1.06249 1.19493 1.33908 0.93749 0.88538 0.91364 1.25387 1.03633 0.96806 1.01029 1.69787 1.53140 1.10037 1.28992 0.85357 0.76926 0.77918 0.80960 1.21151 1.22674 1.20167 0.93911 0.95333 0.90304 0.87109 0.90309 0.89678 0.94397 0.91009 0.74978 0.78720 0.80660 0.76335 0.84077 0.79792 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.78 2.84 44.99 0.13 5.91 16 3 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 4 C -0.12 -3.19 4.29 30.60 0.13 -3.06 16 5 C 0.15 4.53 2.52 44.99 0.11 4.64 16 6 H 0.05 2.17 7.05 -2.39 -0.02 2.15 16 7 C -0.15 -3.84 9.48 71.98 0.68 -3.16 16 8 N -0.69 -19.21 4.40 -445.68 -1.96 -21.17 16 9 C 0.56 19.15 7.74 86.70 0.67 19.82 16 10 O -0.58 -25.55 16.07 -4.01 -0.06 -25.61 16 11 C -0.19 -5.43 5.89 -20.03 -0.12 -5.54 16 12 C 0.17 3.87 10.69 85.33 0.91 4.78 16 13 N -0.47 -11.66 10.39 -188.74 -1.96 -13.62 16 14 C 0.13 3.12 6.97 39.70 0.28 3.39 16 15 C -0.14 -2.22 10.16 21.79 0.22 -2.00 16 16 C -0.14 -1.61 11.08 66.76 0.74 -0.87 16 17 S 0.14 2.33 23.29 -56.49 -1.32 1.02 16 18 C -0.23 -5.74 6.49 22.99 0.15 -5.60 16 19 C 0.02 0.52 9.73 22.88 0.22 0.74 16 20 N -0.73 -36.11 4.49 -322.94 -1.45 -37.56 16 21 C -0.22 -12.66 9.93 84.03 0.83 -11.83 16 22 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 24 N -0.97 -61.33 13.06 21.65 0.28 -61.04 16 25 Si 0.96 48.47 29.55 68.60 2.03 50.50 16 26 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 28 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.02 8.14 -2.38 -0.02 1.01 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.41 8.01 6.66 -92.71 -0.62 7.39 16 38 H 0.20 3.04 6.41 -2.91 -0.02 3.02 16 39 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.14 4.24 7.72 -2.91 -0.02 4.21 16 42 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 43 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -79.58 375.95 1.38 -78.20 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.29 Total: 30.48 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.11 Total: -1.17 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -5.09 Total: -133.41 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.61 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.02 kcal Total: -79.58 1.38 -78.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135187936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.183 kcal (2) G-P(sol) polarization free energy of solvation -79.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds