Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47238 * 2 1 4 4 C 1.53003 * 109.47306 * 240.00027 * 2 1 3 5 5 C 1.52999 * 109.47015 * 175.00163 * 4 2 1 6 6 H 1.09001 * 109.47362 * 304.99190 * 5 4 2 7 7 C 1.53006 * 109.46623 * 184.99741 * 5 4 2 8 8 N 1.46496 * 109.47487 * 64.99979 * 5 4 2 9 9 C 1.34779 * 119.99965 * 205.00106 * 8 5 4 10 10 O 1.21589 * 119.99816 * 359.97438 * 9 8 5 11 11 C 1.47559 * 119.99619 * 180.02562 * 9 8 5 12 12 C 1.40119 * 120.59555 * 359.97438 * 11 9 8 13 13 N 1.30608 * 121.17512 * 180.02562 * 12 11 9 14 14 C 1.34906 * 122.44678 * 0.02562 * 13 12 11 15 15 C 1.40623 * 128.45858 * 179.97438 * 14 13 12 16 16 C 1.32283 * 115.90657 * 180.02562 * 15 14 13 17 17 S 1.75497 * 110.83933 * 359.97438 * 16 15 14 18 18 C 1.40096 * 119.27542 * 0.02562 * 14 13 12 19 19 C 1.39369 * 119.74799 * 359.71839 * 18 14 13 20 20 N 1.46502 * 109.47038 * 119.99715 * 2 1 3 21 21 C 1.36933 * 120.00246 * 274.99579 * 20 2 1 22 22 H 1.08007 * 119.99759 * 0.02562 * 21 20 2 23 23 C 1.38809 * 120.00508 * 180.02562 * 21 20 2 24 24 N 1.31621 * 119.99714 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00237 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47177 * 90.00182 * 25 23 21 27 27 H 1.48501 * 109.46807 * 209.99840 * 25 23 21 28 28 H 1.48496 * 109.47203 * 329.99798 * 25 23 21 29 29 H 1.09000 * 109.47047 * 300.00187 * 1 2 3 30 30 H 1.08997 * 109.46895 * 59.99809 * 1 2 3 31 31 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47229 * 54.99742 * 4 2 1 33 33 H 1.08998 * 109.46376 * 295.00183 * 4 2 1 34 34 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 36 36 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 37 37 H 0.97003 * 119.99991 * 24.99180 * 8 5 4 38 38 H 1.08000 * 119.41188 * 0.03505 * 12 11 9 39 39 H 1.07999 * 122.05085 * 359.97340 * 15 14 13 40 40 H 1.08007 * 124.58073 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.73174 * 180.30587 * 19 18 14 42 42 H 0.96996 * 119.99996 * 95.00273 * 20 2 1 43 43 H 0.97000 * 120.00356 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2251 -2.6240 8 7 4.1537 -1.3342 -0.1824 9 6 5.3748 -0.9910 0.2734 10 8 5.9878 -0.0834 -0.2547 11 6 5.9681 -1.7175 1.4125 12 6 5.2728 -2.7657 2.0299 13 7 5.7870 -3.4160 3.0391 14 6 7.0031 -3.1237 3.5447 15 6 7.6739 -3.7353 4.6187 16 6 8.8683 -3.2459 4.9080 17 16 9.2819 -1.9278 3.8258 18 6 7.7507 -2.0854 2.9739 19 6 7.2338 -1.3747 1.8922 20 7 2.0183 -0.6906 1.1962 21 6 2.1492 -0.0074 2.3757 22 1 1.8920 1.0405 2.4243 23 6 2.6124 -0.6615 3.5091 24 7 2.9263 -1.9384 3.4498 25 14 2.7902 0.2703 5.1183 26 1 1.5227 0.1781 5.8863 27 1 3.8952 -0.3224 5.9138 28 1 3.0942 1.6957 4.8339 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2055 34 1 5.1508 -1.1478 -2.6701 35 1 3.7723 -2.2741 -2.6698 36 1 3.6264 -0.6887 -3.4657 37 1 3.6647 -2.0584 0.2387 38 1 4.2944 -3.0408 1.6646 39 1 7.2401 -4.5538 5.1739 40 1 9.5036 -3.6092 5.7024 41 1 7.7986 -0.5747 1.4369 42 1 2.2490 -1.6317 1.1527 43 1 3.2496 -2.3957 4.2418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135187937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = 18.351521 kcal Electronic energy + Delta-G solvation = -27192.795078 eV Core-core repulsion = 23557.201475 eV Total energy + Delta-G solvation = -3635.593603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64842 -40.38039 -38.31902 -36.60168 -35.80539 -34.05553 -33.46003 -32.35728 -30.65824 -29.95830 -27.57660 -26.04211 -25.54981 -24.75487 -23.10008 -22.02465 -21.67633 -21.15182 -19.41889 -19.08412 -17.99072 -17.71568 -17.11698 -16.85394 -16.56965 -16.09652 -15.63404 -15.49022 -15.31381 -15.10817 -14.92521 -14.33364 -14.20347 -14.15022 -13.80173 -13.57777 -13.52266 -13.30123 -13.18718 -12.90978 -12.78306 -12.63425 -12.59740 -12.27036 -12.18376 -12.08255 -11.69892 -11.60102 -11.45070 -11.39326 -11.11273 -10.87310 -10.31588 -9.95472 -9.64528 -8.96174 -8.77729 -7.83552 -5.03218 -0.78744 0.11215 0.38774 0.86412 0.96787 1.38731 1.43919 1.46048 2.00462 2.34712 2.58110 2.89146 3.21783 3.50990 3.61182 3.72058 3.87980 3.90645 4.04933 4.16147 4.19517 4.24543 4.40354 4.49941 4.59795 4.71068 4.71494 4.86334 4.87722 4.90686 4.93801 5.03038 5.11582 5.14183 5.16729 5.18798 5.39837 5.44579 5.52284 5.63009 5.65558 5.74587 6.38155 6.62459 6.92972 7.29571 7.48077 8.19194 8.46475 9.35319 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.005042 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.613766 B = 5552.175092 C = 7138.254291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.060 0.940 7 C -0.153 4.153 8 N -0.683 5.683 9 C 0.574 3.426 10 O -0.588 6.588 11 C -0.195 4.195 12 C 0.215 3.785 13 N -0.479 5.479 14 C 0.127 3.873 15 C -0.143 4.143 16 C -0.141 4.141 17 S 0.132 5.868 18 C -0.243 4.243 19 C 0.013 3.987 20 N -0.718 5.718 21 C -0.223 4.223 22 H 0.054 0.946 23 C -0.044 4.044 24 N -0.922 5.922 25 Si 0.929 3.071 26 H -0.292 1.292 27 H -0.308 1.308 28 H -0.289 1.289 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.404 0.596 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.220 0.780 41 H 0.147 0.853 42 H 0.375 0.625 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 -4.465 -6.031 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.048 0.952 4 C -0.159 4.159 5 C 0.041 3.959 6 H 0.078 0.922 7 C -0.211 4.211 8 N -0.333 5.333 9 C 0.361 3.639 10 O -0.471 6.471 11 C -0.203 4.203 12 C 0.044 3.956 13 N -0.188 5.188 14 C -0.007 4.007 15 C -0.173 4.173 16 C -0.278 4.278 17 S 0.394 5.606 18 C -0.359 4.359 19 C -0.018 4.018 20 N -0.361 5.361 21 C -0.356 4.356 22 H 0.072 0.928 23 C -0.239 4.239 24 N -0.571 5.571 25 Si 0.763 3.237 26 H -0.220 1.220 27 H -0.236 1.236 28 H -0.216 1.216 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.243 0.757 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.236 0.764 41 H 0.165 0.835 42 H 0.209 0.791 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.070 -3.476 -5.965 11.399 hybrid contribution -1.111 0.027 1.440 1.819 sum 7.959 -3.449 -4.525 9.784 Atomic orbital electron populations 1.22266 0.97661 1.01044 1.00358 1.20508 0.92724 0.94967 0.86499 0.95226 1.22146 0.92591 1.02314 0.98805 1.21031 0.93512 0.96060 0.85309 0.92168 1.22118 1.00693 1.01996 0.96259 1.45933 1.16567 1.37094 1.33724 1.17799 0.81945 0.82250 0.81862 1.90663 1.63231 1.32309 1.60884 1.20961 0.96828 1.01505 1.01012 1.22739 0.96564 0.88273 0.88026 1.67590 1.10098 1.30061 1.11034 1.19920 0.91224 0.93415 0.96153 1.19850 0.95548 1.04061 0.97853 1.25857 0.99513 0.98675 1.03721 1.83902 1.13054 1.36010 1.27654 1.23672 1.03262 1.04464 1.04532 1.20978 0.93499 0.95777 0.91521 1.42490 1.78103 1.09924 1.05622 1.19195 1.34534 0.93333 0.88528 0.92826 1.24855 1.03695 0.96728 0.98624 1.69492 1.51286 1.07963 1.28366 0.85815 0.76367 0.78027 0.83514 1.21994 1.23557 1.21574 0.95369 0.91263 0.93266 0.87047 0.90312 0.94188 0.91187 0.89323 0.75716 0.81714 0.81719 0.76367 0.83526 0.79085 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.49 71.98 0.68 -4.10 16 2 C 0.16 5.58 2.89 44.99 0.13 5.71 16 3 H 0.03 1.14 8.08 -2.38 -0.02 1.12 16 4 C -0.12 -3.11 4.43 30.60 0.14 -2.98 16 5 C 0.14 4.32 2.57 44.99 0.12 4.44 16 6 H 0.06 2.11 7.58 -2.39 -0.02 2.10 16 7 C -0.15 -3.60 9.48 71.98 0.68 -2.92 16 8 N -0.68 -24.02 3.75 -445.67 -1.67 -25.69 16 9 C 0.57 23.44 7.74 86.70 0.67 24.11 16 10 O -0.59 -26.40 16.07 -4.00 -0.06 -26.46 16 11 C -0.19 -7.92 5.89 -20.03 -0.12 -8.03 16 12 C 0.22 8.84 9.01 85.33 0.77 9.60 16 13 N -0.48 -19.71 10.39 -188.73 -1.96 -21.67 16 14 C 0.13 4.65 6.97 39.70 0.28 4.92 16 15 C -0.14 -3.97 10.16 21.79 0.22 -3.75 16 16 C -0.14 -2.96 11.08 66.76 0.74 -2.22 16 17 S 0.13 3.27 23.29 -56.49 -1.32 1.96 16 18 C -0.24 -8.43 6.49 22.99 0.15 -8.28 16 19 C 0.01 0.48 9.73 22.88 0.22 0.70 16 20 N -0.72 -31.05 3.84 -322.92 -1.24 -32.30 16 21 C -0.22 -11.50 9.93 84.03 0.83 -10.67 16 22 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 23 C -0.04 -2.35 5.50 84.86 0.47 -1.88 16 24 N -0.92 -48.70 10.73 21.65 0.23 -48.46 16 25 Si 0.93 46.47 29.55 68.60 2.03 48.50 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 28 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.40 14.17 4.56 -92.71 -0.42 13.75 16 38 H 0.17 6.79 5.84 -2.91 -0.02 6.77 16 39 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.15 5.25 7.72 -2.91 -0.02 5.22 16 42 H 0.37 16.34 5.70 -92.71 -0.53 15.82 16 43 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -65.30 367.18 2.08 -63.22 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.10 Total: 36.25 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.98 Total: 4.66 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -4.64 Total: -128.12 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.06 Total: -26.46 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.96 kcal Total: -65.30 2.08 -63.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135187937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.572 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds