Wall clock time and date at job start Tue Mar 31 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47749 * 2 1 4 4 C 1.53000 * 109.47672 * 239.99193 * 2 1 3 5 5 C 1.52993 * 109.47457 * 176.87604 * 4 2 1 6 6 H 1.09001 * 109.47308 * 54.76272 * 5 4 2 7 7 C 1.53001 * 109.47385 * 294.76295 * 5 4 2 8 8 N 1.46498 * 109.47488 * 174.76007 * 5 4 2 9 9 C 1.36936 * 120.00493 * 204.95546 * 8 5 4 10 10 H 1.08001 * 119.99671 * 4.90512 * 9 8 5 11 11 C 1.38810 * 120.00085 * 184.91136 * 9 8 5 12 12 N 1.31626 * 120.00069 * 183.73765 * 11 9 8 13 13 Si 1.86799 * 120.00192 * 3.73926 * 11 9 8 14 14 H 1.48494 * 109.47552 * 92.00452 * 13 11 9 15 15 H 1.48495 * 109.47197 * 212.00872 * 13 11 9 16 16 H 1.48500 * 109.46959 * 332.00631 * 13 11 9 17 17 N 1.46511 * 109.46840 * 119.99400 * 2 1 3 18 18 C 1.34780 * 119.99594 * 274.30143 * 17 2 1 19 19 O 1.21588 * 120.00317 * 4.73605 * 18 17 2 20 20 C 1.47556 * 119.99397 * 184.73568 * 18 17 2 21 21 C 1.40121 * 120.59330 * 354.99164 * 20 18 17 22 22 N 1.30617 * 121.17713 * 179.97438 * 21 20 18 23 23 C 1.34915 * 122.44162 * 359.97438 * 22 21 20 24 24 C 1.40621 * 128.45644 * 179.97438 * 23 22 21 25 25 C 1.32275 * 115.90886 * 180.02562 * 24 23 22 26 26 S 1.75510 * 110.83900 * 0.02562 * 25 24 23 27 27 C 1.40088 * 119.27400 * 0.02562 * 23 22 21 28 28 C 1.39363 * 119.75465 * 359.97438 * 27 23 22 29 29 H 1.08996 * 109.47367 * 300.00915 * 1 2 3 30 30 H 1.09003 * 109.46508 * 60.00629 * 1 2 3 31 31 H 1.08998 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46980 * 296.87773 * 4 2 1 33 33 H 1.09006 * 109.46696 * 56.87296 * 4 2 1 34 34 H 1.09001 * 109.46878 * 300.00240 * 7 5 4 35 35 H 1.09005 * 109.47268 * 59.99824 * 7 5 4 36 36 H 1.09001 * 109.47323 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99589 * 24.95137 * 8 5 4 38 38 H 0.96998 * 119.99942 * 180.02562 * 12 11 9 39 39 H 0.96999 * 119.99691 * 94.30686 * 17 2 1 40 40 H 1.07999 * 119.41109 * 359.96103 * 21 20 18 41 41 H 1.08002 * 122.04696 * 0.02562 * 24 23 22 42 42 H 1.08005 * 124.58394 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.73717 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5680 -0.6537 -1.2890 6 1 3.9737 -1.0499 -0.3581 7 6 4.0098 0.8012 -1.4594 8 7 4.0630 -1.4493 -2.4151 9 6 5.3303 -1.9670 -2.3831 10 1 5.9365 -1.8565 -1.4962 11 6 5.8359 -2.6336 -3.4908 12 7 7.0251 -3.1949 -3.4349 13 14 4.8285 -2.7342 -5.0606 14 1 5.1800 -1.5967 -5.9481 15 1 5.1214 -4.0133 -5.7557 16 1 3.3830 -2.6724 -4.7260 17 7 2.0183 -0.6905 1.1964 18 6 2.1603 -0.0146 2.3537 19 8 1.8027 1.1451 2.4284 20 6 2.7499 -0.6821 3.5302 21 6 3.0699 -2.0457 3.4906 22 7 3.5926 -2.6479 4.5251 23 6 3.8545 -2.0040 5.6814 24 6 4.4101 -2.5224 6.8647 25 6 4.5595 -1.6621 7.8583 26 16 3.9989 -0.0658 7.3916 27 6 3.5582 -0.6390 5.7876 28 6 2.9999 0.0341 4.7025 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7233 -1.7639 -1.2214 33 1 1.6317 -0.2410 -2.1383 34 1 3.6041 1.1975 -2.3902 35 1 3.6416 1.3933 -0.6214 36 1 5.0984 0.8495 -1.4873 37 1 3.4929 -1.6095 -3.1833 38 1 7.3786 -3.6604 -4.2090 39 1 2.2394 -1.6341 1.1554 40 1 2.8808 -2.6089 2.5887 41 1 4.6972 -3.5595 6.9565 42 1 4.9709 -1.9087 8.8260 43 1 2.7648 1.0862 4.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135187939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:19 Heat of formation + Delta-G solvation = 30.652885 kcal Electronic energy + Delta-G solvation = -25553.638367 eV Core-core repulsion = 21918.578191 eV Total energy + Delta-G solvation = -3635.060176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98840 -39.59802 -37.17032 -35.98251 -34.84172 -32.81524 -32.37863 -31.35266 -29.75704 -29.06264 -26.41710 -25.43096 -24.17826 -23.56791 -22.26390 -21.28649 -20.64038 -19.84816 -18.85195 -17.68597 -17.21740 -16.99236 -16.43546 -15.97374 -15.32633 -14.90209 -14.59267 -14.50409 -14.30063 -14.26732 -13.73712 -13.50988 -13.31809 -13.11366 -12.94796 -12.65242 -12.61612 -12.22022 -12.03698 -11.99576 -11.75786 -11.48375 -11.33138 -11.02618 -10.78524 -10.68235 -10.57081 -10.30890 -10.21979 -9.98925 -9.66191 -9.59705 -9.21527 -8.99496 -8.95011 -8.38861 -7.28149 -5.77879 -3.13617 -0.16133 0.72442 0.98561 1.45374 1.57153 2.75712 3.02057 3.34590 3.39563 3.44581 3.54442 3.70760 4.25981 4.40700 4.49643 4.57683 4.66857 4.76933 4.79543 5.08411 5.14543 5.25379 5.33470 5.47177 5.47649 5.53856 5.60026 5.61962 5.69507 5.73216 5.81532 5.92973 6.05584 6.09903 6.16229 6.21613 6.37217 6.48099 6.53716 6.81341 7.01197 7.39421 7.46790 7.99638 8.07012 8.41275 9.20494 9.92721 10.12876 11.40436 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.002806 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.682345 B = 9977.652077 C =11320.993417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.095 0.905 4 C -0.138 4.138 5 C 0.177 3.823 6 H 0.054 0.946 7 C -0.168 4.168 8 N -0.750 5.750 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.711 5.711 18 C 0.569 3.431 19 O -0.537 6.537 20 C -0.177 4.177 21 C 0.162 3.838 22 N -0.457 5.457 23 C 0.145 3.855 24 C -0.118 4.118 25 C -0.166 4.166 26 S 0.121 5.879 27 C -0.212 4.212 28 C 0.030 3.970 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.402 0.598 40 H 0.169 0.831 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 4.941 21.361 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.113 0.887 4 C -0.177 4.177 5 C 0.068 3.932 6 H 0.072 0.928 7 C -0.228 4.228 8 N -0.394 5.394 9 C -0.372 4.372 10 H 0.106 0.894 11 C -0.192 4.192 12 N -0.581 5.581 13 Si 0.718 3.282 14 H -0.212 1.212 15 H -0.219 1.219 16 H -0.205 1.205 17 N -0.362 5.362 18 C 0.355 3.645 19 O -0.415 6.415 20 C -0.185 4.185 21 C -0.010 4.010 22 N -0.165 5.165 23 C 0.011 3.989 24 C -0.148 4.148 25 C -0.303 4.303 26 S 0.384 5.616 27 C -0.329 4.329 28 C 0.000 4.000 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.195 0.805 38 H 0.069 0.931 39 H 0.238 0.762 40 H 0.186 0.814 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.489 6.173 22.276 25.813 hybrid contribution -0.486 -1.120 -1.962 2.311 sum -11.974 5.053 20.314 24.116 Atomic orbital electron populations 1.22177 0.95341 1.02126 1.02420 1.21104 0.93632 0.97901 0.83339 0.88737 1.22255 0.98031 1.00964 0.96416 1.20169 0.90121 0.90737 0.92163 0.92791 1.22470 1.02135 0.98435 0.99747 1.42854 1.15076 1.62150 1.19284 1.19053 0.89624 1.28114 1.00377 0.89359 1.24700 0.96355 1.00384 0.97752 1.69711 1.17500 1.40649 1.30274 0.86511 0.79634 0.77124 0.84913 1.21237 1.21866 1.20481 1.46018 1.66638 1.13918 1.09645 1.17759 0.78236 0.86022 0.82512 1.90781 1.50079 1.16710 1.83917 1.20923 1.05904 0.95987 0.95720 1.22929 0.91029 0.90760 0.96274 1.67611 1.11850 1.38478 0.98553 1.19287 0.97224 0.88848 0.93504 1.19687 1.02275 1.02248 0.90603 1.25438 1.05092 0.96124 1.03645 1.84334 1.63541 1.09813 1.03868 1.23548 1.09754 0.98930 1.00672 1.20966 0.90026 1.00355 0.88676 0.92201 0.91538 0.92446 0.91020 0.90473 0.93594 0.94097 0.92491 0.80543 0.93087 0.76180 0.81421 0.82631 0.80407 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.49 37.16 0.35 -1.36 16 2 C 0.14 1.76 2.40 -67.93 -0.16 1.60 16 3 H 0.09 1.29 5.92 -51.93 -0.31 0.98 16 4 C -0.14 -1.88 4.42 -26.73 -0.12 -2.00 16 5 C 0.18 3.17 2.90 -67.93 -0.20 2.98 16 6 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 7 C -0.17 -2.94 9.25 37.16 0.34 -2.59 16 8 N -0.75 -16.95 4.90 -53.43 -0.26 -17.21 16 9 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 10 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 11 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 12 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 13 Si 0.89 21.84 27.93 -169.99 -4.75 17.09 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.32 6.26 56.52 0.35 -5.97 16 17 N -0.71 -8.32 4.31 -54.83 -0.24 -8.55 16 18 C 0.57 7.43 7.73 -12.46 -0.10 7.33 16 19 O -0.54 -8.45 16.12 5.29 0.09 -8.36 16 20 C -0.18 -2.11 5.89 -104.87 -0.62 -2.73 16 21 C 0.16 1.87 10.69 -17.36 -0.19 1.69 16 22 N -0.46 -5.84 10.39 -11.00 -0.11 -5.95 16 23 C 0.15 1.70 6.97 -84.92 -0.59 1.11 16 24 C -0.12 -1.05 10.16 -40.61 -0.41 -1.46 16 25 C -0.17 -1.14 11.08 28.81 0.32 -0.82 16 26 S 0.12 0.98 23.29 -107.50 -2.50 -1.53 16 27 C -0.21 -2.32 6.49 -38.47 -0.25 -2.57 16 28 C 0.03 0.34 9.73 -38.64 -0.38 -0.03 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.63 6.51 -51.93 -0.34 0.30 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.36 8.04 5.58 -40.82 -0.23 7.81 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.40 4.08 6.66 -40.82 -0.27 3.81 16 40 H 0.17 1.54 6.43 -52.49 -0.34 1.20 16 41 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.15 1.61 7.73 -52.49 -0.41 1.21 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -33.93 370.26 -9.35 -43.28 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.69 Total: 9.61 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.24 Total: -5.66 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.16 Total: -60.02 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.75 Total: 17.09 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.93 -9.35 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135187939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.935 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds