Wall clock time and date at job start Tue Mar 31 2020 18:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47749 * 2 1 4 4 C 1.53000 * 109.47672 * 239.99193 * 2 1 3 5 5 C 1.52993 * 109.47457 * 176.87604 * 4 2 1 6 6 H 1.09001 * 109.47308 * 54.76272 * 5 4 2 7 7 C 1.53001 * 109.47385 * 294.76295 * 5 4 2 8 8 N 1.46498 * 109.47488 * 174.76007 * 5 4 2 9 9 C 1.36936 * 120.00493 * 204.95546 * 8 5 4 10 10 H 1.08001 * 119.99671 * 4.90512 * 9 8 5 11 11 C 1.38810 * 120.00085 * 184.91136 * 9 8 5 12 12 N 1.31626 * 120.00069 * 183.73765 * 11 9 8 13 13 Si 1.86799 * 120.00192 * 3.73926 * 11 9 8 14 14 H 1.48494 * 109.47552 * 92.00452 * 13 11 9 15 15 H 1.48495 * 109.47197 * 212.00872 * 13 11 9 16 16 H 1.48500 * 109.46959 * 332.00631 * 13 11 9 17 17 N 1.46511 * 109.46840 * 119.99400 * 2 1 3 18 18 C 1.34780 * 119.99594 * 274.30143 * 17 2 1 19 19 O 1.21588 * 120.00317 * 4.73605 * 18 17 2 20 20 C 1.47556 * 119.99397 * 184.73568 * 18 17 2 21 21 C 1.40121 * 120.59330 * 354.99164 * 20 18 17 22 22 N 1.30617 * 121.17713 * 179.97438 * 21 20 18 23 23 C 1.34915 * 122.44162 * 359.97438 * 22 21 20 24 24 C 1.40621 * 128.45644 * 179.97438 * 23 22 21 25 25 C 1.32275 * 115.90886 * 180.02562 * 24 23 22 26 26 S 1.75510 * 110.83900 * 0.02562 * 25 24 23 27 27 C 1.40088 * 119.27400 * 0.02562 * 23 22 21 28 28 C 1.39363 * 119.75465 * 359.97438 * 27 23 22 29 29 H 1.08996 * 109.47367 * 300.00915 * 1 2 3 30 30 H 1.09003 * 109.46508 * 60.00629 * 1 2 3 31 31 H 1.08998 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46980 * 296.87773 * 4 2 1 33 33 H 1.09006 * 109.46696 * 56.87296 * 4 2 1 34 34 H 1.09001 * 109.46878 * 300.00240 * 7 5 4 35 35 H 1.09005 * 109.47268 * 59.99824 * 7 5 4 36 36 H 1.09001 * 109.47323 * 179.97438 * 7 5 4 37 37 H 0.97001 * 119.99589 * 24.95137 * 8 5 4 38 38 H 0.96998 * 119.99942 * 180.02562 * 12 11 9 39 39 H 0.96999 * 119.99691 * 94.30686 * 17 2 1 40 40 H 1.07999 * 119.41109 * 359.96103 * 21 20 18 41 41 H 1.08002 * 122.04696 * 0.02562 * 24 23 22 42 42 H 1.08005 * 124.58394 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.73717 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5680 -0.6537 -1.2890 6 1 3.9737 -1.0499 -0.3581 7 6 4.0098 0.8012 -1.4594 8 7 4.0630 -1.4493 -2.4151 9 6 5.3303 -1.9670 -2.3831 10 1 5.9365 -1.8565 -1.4962 11 6 5.8359 -2.6336 -3.4908 12 7 7.0251 -3.1949 -3.4349 13 14 4.8285 -2.7342 -5.0606 14 1 5.1800 -1.5967 -5.9481 15 1 5.1214 -4.0133 -5.7557 16 1 3.3830 -2.6724 -4.7260 17 7 2.0183 -0.6905 1.1964 18 6 2.1603 -0.0146 2.3537 19 8 1.8027 1.1451 2.4284 20 6 2.7499 -0.6821 3.5302 21 6 3.0699 -2.0457 3.4906 22 7 3.5926 -2.6479 4.5251 23 6 3.8545 -2.0040 5.6814 24 6 4.4101 -2.5224 6.8647 25 6 4.5595 -1.6621 7.8583 26 16 3.9989 -0.0658 7.3916 27 6 3.5582 -0.6390 5.7876 28 6 2.9999 0.0341 4.7025 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7233 -1.7639 -1.2214 33 1 1.6317 -0.2410 -2.1383 34 1 3.6041 1.1975 -2.3902 35 1 3.6416 1.3933 -0.6214 36 1 5.0984 0.8495 -1.4873 37 1 3.4929 -1.6095 -3.1833 38 1 7.3786 -3.6604 -4.2090 39 1 2.2394 -1.6341 1.1554 40 1 2.8808 -2.6089 2.5887 41 1 4.6972 -3.5595 6.9565 42 1 4.9709 -1.9087 8.8260 43 1 2.7648 1.0862 4.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135187939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:18 Heat of formation + Delta-G solvation = 7.976140 kcal Electronic energy + Delta-G solvation = -25554.621704 eV Core-core repulsion = 21918.578191 eV Total energy + Delta-G solvation = -3636.043513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87241 -40.57234 -38.47462 -36.74958 -36.30949 -34.10615 -33.69361 -32.64849 -30.98521 -30.34604 -27.62836 -26.27863 -25.50933 -24.92340 -23.19128 -22.37363 -21.66860 -21.22193 -19.89006 -19.44443 -18.12619 -17.87207 -17.23115 -16.96642 -16.69044 -16.25129 -16.01216 -15.48085 -15.37329 -15.26006 -15.02528 -14.69745 -14.41337 -14.35146 -14.02108 -13.91300 -13.65059 -13.45124 -13.36053 -12.97733 -12.84603 -12.81087 -12.70963 -12.24349 -12.13104 -12.02906 -11.82377 -11.64524 -11.58245 -11.47055 -11.32374 -10.97182 -10.57818 -10.18620 -9.83123 -9.29094 -9.08034 -7.99079 -5.32262 -0.97181 -0.13348 0.28157 0.78965 0.82948 1.39325 1.44770 1.51487 1.81603 2.06782 2.51563 2.65174 2.95123 3.32621 3.43661 3.47678 3.55234 3.64796 3.93175 4.00113 4.01632 4.16188 4.22405 4.38586 4.46632 4.59081 4.63392 4.65824 4.71780 4.82311 4.89612 4.92935 4.97844 5.03223 5.05726 5.11479 5.26494 5.34990 5.39864 5.45258 5.60169 5.81750 6.25174 6.42977 6.61223 7.08035 7.12762 7.88902 8.09038 9.22693 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.002806 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.682345 B = 9977.652077 C =11320.993417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.171 3.829 6 H 0.043 0.957 7 C -0.160 4.160 8 N -0.750 5.750 9 C -0.224 4.224 10 H 0.051 0.949 11 C -0.068 4.068 12 N -0.987 5.987 13 Si 0.958 3.042 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.243 1.243 17 N -0.705 5.705 18 C 0.572 3.428 19 O -0.568 6.568 20 C -0.192 4.192 21 C 0.160 3.840 22 N -0.483 5.483 23 C 0.130 3.870 24 C -0.145 4.145 25 C -0.139 4.139 26 S 0.150 5.850 27 C -0.235 4.235 28 C 0.027 3.973 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.368 0.632 38 H 0.256 0.744 39 H 0.410 0.590 40 H 0.184 0.816 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 5.213 22.064 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.162 4.162 5 C 0.063 3.937 6 H 0.061 0.939 7 C -0.220 4.220 8 N -0.394 5.394 9 C -0.356 4.356 10 H 0.069 0.931 11 C -0.259 4.259 12 N -0.638 5.638 13 Si 0.786 3.214 14 H -0.213 1.213 15 H -0.226 1.226 16 H -0.167 1.167 17 N -0.357 5.357 18 C 0.359 3.641 19 O -0.448 6.448 20 C -0.200 4.200 21 C -0.012 4.012 22 N -0.192 5.192 23 C -0.004 4.004 24 C -0.174 4.174 25 C -0.276 4.276 26 S 0.414 5.586 27 C -0.352 4.352 28 C -0.003 4.003 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.201 0.799 38 H 0.065 0.935 39 H 0.247 0.753 40 H 0.201 0.799 41 H 0.186 0.814 42 H 0.235 0.765 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.614 6.467 23.006 27.503 hybrid contribution 0.241 -1.143 -1.949 2.272 sum -13.373 5.324 21.057 25.507 Atomic orbital electron populations 1.22103 0.93485 1.03024 1.02669 1.21047 0.94955 0.96895 0.82678 0.90061 1.22110 0.94213 1.02119 0.97788 1.20387 0.93201 0.90032 0.90062 0.93912 1.22354 1.00030 0.98466 1.01146 1.42825 1.13326 1.62472 1.20804 1.18976 0.91034 1.26790 0.98753 0.93125 1.25544 0.97775 1.00878 1.01678 1.69905 1.20012 1.42591 1.31273 0.85355 0.79864 0.76409 0.79766 1.21265 1.22646 1.16701 1.46001 1.66127 1.14266 1.09286 1.17873 0.77710 0.85603 0.82946 1.90756 1.51631 1.17968 1.84479 1.20841 1.07181 0.96295 0.95712 1.23161 0.90649 0.90753 0.96683 1.67619 1.12943 1.39264 0.99367 1.19801 0.97199 0.89402 0.93984 1.19875 1.03801 1.03465 0.90286 1.25948 1.02391 0.94793 1.04431 1.84270 1.62608 1.10260 1.01509 1.23787 1.10162 0.99101 1.02129 1.21103 0.89755 1.00559 0.88924 0.93213 0.90039 0.91214 0.89980 0.88867 0.92565 0.92177 0.95655 0.79856 0.93516 0.75282 0.79915 0.81385 0.76502 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.49 71.98 0.68 -2.18 16 2 C 0.15 3.34 2.40 44.99 0.11 3.45 16 3 H 0.08 2.09 5.92 -2.39 -0.01 2.08 16 4 C -0.12 -3.05 4.42 30.59 0.14 -2.91 16 5 C 0.17 5.93 2.90 44.99 0.13 6.06 16 6 H 0.04 1.59 7.47 -2.39 -0.02 1.57 16 7 C -0.16 -5.48 9.25 71.98 0.67 -4.81 16 8 N -0.75 -32.98 4.90 -322.96 -1.58 -34.57 16 9 C -0.22 -12.51 10.41 84.03 0.87 -11.64 16 10 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 11 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 12 N -0.99 -63.28 13.97 21.65 0.30 -62.98 16 13 Si 0.96 44.70 27.93 68.60 1.92 46.62 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.24 -9.78 6.26 99.48 0.62 -9.15 16 17 N -0.71 -15.96 4.31 -445.66 -1.92 -17.88 16 18 C 0.57 14.98 7.73 86.70 0.67 15.65 16 19 O -0.57 -17.97 16.12 -3.99 -0.06 -18.04 16 20 C -0.19 -4.69 5.89 -20.03 -0.12 -4.81 16 21 C 0.16 3.77 10.69 85.33 0.91 4.68 16 22 N -0.48 -12.57 10.39 -188.73 -1.96 -14.53 16 23 C 0.13 3.02 6.97 39.70 0.28 3.30 16 24 C -0.14 -2.39 10.16 21.79 0.22 -2.17 16 25 C -0.14 -1.54 11.08 66.76 0.74 -0.80 16 26 S 0.15 2.16 23.29 -56.49 -1.32 0.84 16 27 C -0.23 -5.09 6.49 22.99 0.15 -4.94 16 28 C 0.03 0.62 9.73 22.88 0.22 0.84 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.81 6.51 -2.38 -0.02 1.80 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.37 15.28 5.58 -92.71 -0.52 14.76 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.41 7.98 6.66 -92.71 -0.62 7.36 16 40 H 0.18 3.41 6.43 -2.91 -0.02 3.39 16 41 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.22 0.59 8.06 -2.91 -0.02 0.57 16 43 H 0.16 3.39 7.73 -2.91 -0.02 3.36 16 Total: -1.00 -75.70 370.26 1.35 -74.36 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.16 Total: 29.92 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.14 Total: -3.74 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.17 Total: -129.96 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.06 Total: -18.04 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.92 Total: 46.62 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.84 kcal Total: -75.70 1.35 -74.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135187939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.333 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds