Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09000 * 109.46953 * 54.99872 * 5 4 2 7 7 C 1.53001 * 109.47239 * 175.00020 * 5 4 2 8 8 N 1.46500 * 109.46937 * 295.00311 * 5 4 2 9 9 C 1.34770 * 120.00009 * 154.99831 * 8 5 4 10 10 O 1.21612 * 120.00099 * 0.02562 * 9 8 5 11 11 C 1.47370 * 120.00151 * 179.97438 * 9 8 5 12 12 C 1.38764 * 120.54900 * 359.71944 * 11 9 8 13 13 N 1.31910 * 121.11253 * 179.67765 * 12 11 9 14 14 C 1.31670 * 122.22026 * 0.64182 * 13 12 11 15 15 C 1.39284 * 121.13990 * 359.65515 * 14 13 12 16 16 S 1.75882 * 131.39371 * 180.02562 * 15 14 13 17 17 C 1.75556 * 91.52178 * 179.97438 * 16 15 14 18 18 C 1.32473 * 110.79340 * 0.02562 * 17 16 15 19 19 C 1.40009 * 115.78020 * 0.02562 * 18 17 16 20 20 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 31 31 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 34 34 H 1.09004 * 109.46844 * 60.00283 * 7 5 4 35 35 H 1.08998 * 109.47096 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.46930 * 300.00039 * 7 5 4 37 37 H 0.97001 * 119.99738 * 334.99867 * 8 5 4 38 38 H 1.07999 * 119.44385 * 0.02562 * 12 11 9 39 39 H 1.08004 * 119.42550 * 179.67592 * 14 13 12 40 40 H 1.08000 * 124.59768 * 179.97438 * 17 16 15 41 41 H 1.08000 * 122.10634 * 180.02562 * 18 17 16 42 42 H 0.97000 * 119.99792 * 94.99575 * 20 2 1 43 43 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.9954 -0.9924 -0.3866 7 6 4.0852 -1.4386 -2.4923 8 7 3.9481 0.7892 -1.4923 9 6 5.1613 1.2132 -1.0865 10 8 5.9381 0.4315 -0.5724 11 6 5.5470 2.6241 -1.2668 12 6 4.6723 3.5244 -1.8583 13 7 5.0036 4.7910 -2.0195 14 6 6.1737 5.2638 -1.6440 15 6 7.1249 4.4407 -1.0458 16 16 8.7444 4.7783 -0.4487 17 6 8.9602 3.1082 0.0474 18 6 7.8815 2.3916 -0.2315 19 6 6.8303 3.0861 -0.8421 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6062 -0.6633 3.5106 24 7 2.7268 -0.0080 4.6457 25 14 3.0504 -2.4758 3.4268 26 1 4.4848 -2.6179 3.0695 27 1 2.8044 -3.1073 4.7481 28 1 2.2151 -3.1430 2.3961 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5139 -0.8901 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.6547 -1.0596 -3.4192 35 1 5.1715 -1.3614 -2.5384 36 1 3.8001 -2.4822 -2.3592 37 1 3.3286 1.4126 -1.9027 38 1 3.7017 3.1835 -2.1872 39 1 6.3997 6.3080 -1.8024 40 1 9.8517 2.7178 0.5156 41 1 7.8171 1.3381 -0.0024 42 1 2.2489 -1.6318 1.1527 43 1 3.0466 -0.4660 5.4386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135268987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = 32.075980 kcal Electronic energy + Delta-G solvation = -26396.487535 eV Core-core repulsion = 22761.489069 eV Total energy + Delta-G solvation = -3634.998466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.92764 -39.20713 -37.03487 -36.40990 -34.59889 -32.58798 -31.86303 -30.49638 -30.26211 -29.21128 -26.45273 -24.87316 -24.61205 -23.30655 -21.70501 -21.20142 -20.54970 -19.84906 -18.59449 -17.66987 -17.43716 -16.51536 -16.14949 -15.80449 -15.16292 -14.77348 -14.54176 -14.30881 -14.23030 -14.11936 -13.75142 -13.61957 -13.07377 -12.86852 -12.66733 -12.41769 -12.38998 -12.17240 -12.15442 -11.99407 -11.73968 -11.26609 -11.12429 -10.91157 -10.67483 -10.52960 -10.31850 -10.27480 -10.03894 -9.96963 -9.54535 -9.51129 -9.23736 -8.90447 -8.86991 -8.06207 -7.22984 -5.72419 -3.07435 0.10388 0.57629 1.21101 1.65146 2.19927 2.87244 3.21730 3.40390 3.44285 3.49221 3.73331 4.08352 4.31880 4.54374 4.60646 4.63667 4.89470 4.93405 5.10230 5.16041 5.22004 5.27931 5.38344 5.50334 5.57586 5.72602 5.74835 5.78188 5.85181 5.97532 5.98978 6.14166 6.17875 6.19109 6.24651 6.31262 6.41671 6.50080 6.67305 6.80239 6.98298 7.56846 7.61924 8.02683 8.34744 8.46236 9.24804 9.97617 10.16592 11.46195 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003846 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.111241 B = 7277.940406 C = 8169.034394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.144 3.856 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.709 5.709 9 C 0.566 3.434 10 O -0.525 6.525 11 C -0.139 4.139 12 C 0.124 3.876 13 N -0.475 5.475 14 C 0.177 3.823 15 C -0.215 4.215 16 S 0.113 5.887 17 C -0.172 4.172 18 C -0.120 4.120 19 C 0.018 3.982 20 N -0.745 5.745 21 C -0.238 4.238 22 H 0.087 0.913 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.360 0.640 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 7.374 -17.854 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.040 3.960 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.352 3.648 10 O -0.402 6.402 11 C -0.147 4.147 12 C -0.030 4.030 13 N -0.184 5.184 14 C 0.009 3.991 15 C -0.333 4.333 16 S 0.375 5.625 17 C -0.307 4.307 18 C -0.149 4.149 19 C 0.001 3.999 20 N -0.388 5.388 21 C -0.368 4.368 22 H 0.105 0.895 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.711 3.289 26 H -0.210 1.210 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.187 0.813 42 H 0.192 0.808 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.208 8.734 -17.591 21.691 hybrid contribution -0.342 -2.815 0.408 2.865 sum 8.866 5.919 -17.182 20.221 Atomic orbital electron populations 1.22423 0.98939 1.00848 1.00376 1.20204 0.91820 0.95815 0.85515 0.92780 1.22236 0.93614 1.02320 0.99243 1.21053 0.95201 0.79967 0.99811 0.88027 1.22198 1.01697 1.00070 0.98079 1.45854 1.16044 1.11804 1.62296 1.17718 0.82306 0.86494 0.78296 1.90743 1.51000 1.55760 1.42662 1.20900 0.94528 0.95628 1.03605 1.22711 0.98508 0.88185 0.93571 1.67718 1.17400 1.15092 1.18162 1.22347 0.86861 0.99200 0.90686 1.23848 1.01581 0.98279 1.09592 1.84091 1.07763 1.09446 1.61212 1.25583 1.03274 0.96206 1.05678 1.20335 0.91268 1.03555 0.99704 1.18263 0.93885 0.91642 0.96064 1.42774 1.79688 1.09213 1.07173 1.19002 1.36865 0.95296 0.85638 0.89477 1.24634 1.01456 0.97334 0.95543 1.69696 1.52911 1.35543 1.00131 0.86603 0.78629 0.86961 0.76682 1.20973 1.21886 1.20371 0.93626 0.92406 0.94316 0.90550 0.91399 0.92796 0.92350 0.91695 0.77022 0.81969 0.81792 0.80748 0.81329 0.80762 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.49 37.16 0.35 -2.38 16 2 C 0.18 3.13 2.84 -67.93 -0.19 2.94 16 3 H 0.05 1.01 7.56 -51.93 -0.39 0.61 16 4 C -0.14 -1.84 4.29 -26.73 -0.11 -1.96 16 5 C 0.14 2.10 2.52 -67.93 -0.17 1.93 16 6 H 0.10 1.93 7.05 -51.93 -0.37 1.57 16 7 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 8 N -0.71 -9.74 4.40 -54.90 -0.24 -9.98 16 9 C 0.57 9.20 7.73 -12.55 -0.10 9.11 16 10 O -0.52 -10.29 14.13 5.27 0.07 -10.21 16 11 C -0.14 -2.02 5.94 -104.21 -0.62 -2.64 16 12 C 0.12 1.52 10.67 -17.32 -0.18 1.33 16 13 N -0.47 -5.86 10.32 -12.87 -0.13 -5.99 16 14 C 0.18 1.96 11.20 -17.23 -0.19 1.77 16 15 C -0.22 -2.63 6.52 -38.49 -0.25 -2.88 16 16 S 0.11 1.11 23.29 -107.50 -2.50 -1.39 16 17 C -0.17 -1.88 11.10 28.82 0.32 -1.56 16 18 C -0.12 -1.67 9.43 -40.84 -0.39 -2.06 16 19 C 0.02 0.26 5.88 -106.75 -0.63 -0.36 16 20 N -0.75 -17.11 4.30 -53.42 -0.23 -17.34 16 21 C -0.24 -6.70 10.41 -15.06 -0.16 -6.85 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -29.88 13.97 55.49 0.78 -29.11 16 25 Si 0.88 22.60 27.74 -169.99 -4.72 17.89 16 26 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -6.62 6.51 56.52 0.37 -6.25 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.39 4.21 6.64 -40.82 -0.27 3.94 16 38 H 0.16 1.50 6.37 -52.49 -0.33 1.17 16 39 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.17 2.62 6.28 -52.49 -0.33 2.29 16 42 H 0.36 8.23 5.66 -40.82 -0.23 8.00 16 43 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -34.99 369.06 -9.22 -44.21 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.74 Total: 11.53 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.06 Total: -5.17 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.17 Total: -62.42 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.72 Total: 17.89 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.50 Total: -1.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.99 -9.22 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.284 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds