Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09000 * 109.46953 * 54.99872 * 5 4 2 7 7 C 1.53001 * 109.47239 * 175.00020 * 5 4 2 8 8 N 1.46500 * 109.46937 * 295.00311 * 5 4 2 9 9 C 1.34770 * 120.00009 * 154.99831 * 8 5 4 10 10 O 1.21612 * 120.00099 * 0.02562 * 9 8 5 11 11 C 1.47370 * 120.00151 * 179.97438 * 9 8 5 12 12 C 1.38764 * 120.54900 * 359.71944 * 11 9 8 13 13 N 1.31910 * 121.11253 * 179.67765 * 12 11 9 14 14 C 1.31670 * 122.22026 * 0.64182 * 13 12 11 15 15 C 1.39284 * 121.13990 * 359.65515 * 14 13 12 16 16 S 1.75882 * 131.39371 * 180.02562 * 15 14 13 17 17 C 1.75556 * 91.52178 * 179.97438 * 16 15 14 18 18 C 1.32473 * 110.79340 * 0.02562 * 17 16 15 19 19 C 1.40009 * 115.78020 * 0.02562 * 18 17 16 20 20 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 31 31 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 34 34 H 1.09004 * 109.46844 * 60.00283 * 7 5 4 35 35 H 1.08998 * 109.47096 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.46930 * 300.00039 * 7 5 4 37 37 H 0.97001 * 119.99738 * 334.99867 * 8 5 4 38 38 H 1.07999 * 119.44385 * 0.02562 * 12 11 9 39 39 H 1.08004 * 119.42550 * 179.67592 * 14 13 12 40 40 H 1.08000 * 124.59768 * 179.97438 * 17 16 15 41 41 H 1.08000 * 122.10634 * 180.02562 * 18 17 16 42 42 H 0.97000 * 119.99792 * 94.99575 * 20 2 1 43 43 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.9954 -0.9924 -0.3866 7 6 4.0852 -1.4386 -2.4923 8 7 3.9481 0.7892 -1.4923 9 6 5.1613 1.2132 -1.0865 10 8 5.9381 0.4315 -0.5724 11 6 5.5470 2.6241 -1.2668 12 6 4.6723 3.5244 -1.8583 13 7 5.0036 4.7910 -2.0195 14 6 6.1737 5.2638 -1.6440 15 6 7.1249 4.4407 -1.0458 16 16 8.7444 4.7783 -0.4487 17 6 8.9602 3.1082 0.0474 18 6 7.8815 2.3916 -0.2315 19 6 6.8303 3.0861 -0.8421 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6062 -0.6633 3.5106 24 7 2.7268 -0.0080 4.6457 25 14 3.0504 -2.4758 3.4268 26 1 4.4848 -2.6179 3.0695 27 1 2.8044 -3.1073 4.7481 28 1 2.2151 -3.1430 2.3961 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5139 -0.8901 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.6547 -1.0596 -3.4192 35 1 5.1715 -1.3614 -2.5384 36 1 3.8001 -2.4822 -2.3592 37 1 3.3286 1.4126 -1.9027 38 1 3.7017 3.1835 -2.1872 39 1 6.3997 6.3080 -1.8024 40 1 9.8517 2.7178 0.5156 41 1 7.8171 1.3381 -0.0024 42 1 2.2489 -1.6318 1.1527 43 1 3.0466 -0.4660 5.4386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135268987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = 7.704287 kcal Electronic energy + Delta-G solvation = -26397.544371 eV Core-core repulsion = 22761.489069 eV Total energy + Delta-G solvation = -3636.055302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.93365 -40.35387 -38.41758 -37.41135 -36.11403 -34.19232 -33.34064 -31.58261 -31.40418 -30.83256 -27.61674 -25.88983 -25.57104 -25.30945 -22.83583 -22.20906 -21.81782 -21.27150 -19.87397 -19.39065 -18.55106 -17.47725 -17.18793 -16.98457 -16.61713 -16.25332 -15.92381 -15.46508 -15.28946 -15.22286 -15.13187 -14.90041 -14.60483 -14.30755 -14.04785 -13.74910 -13.45213 -13.33600 -13.26542 -13.12913 -13.00697 -12.83892 -12.65326 -12.30764 -12.03813 -12.01873 -11.89245 -11.70124 -11.44869 -11.36986 -11.01817 -10.97899 -10.62793 -10.19486 -10.04252 -9.27741 -8.92408 -8.02265 -5.32335 -0.87856 -0.35679 0.35283 0.73463 1.20658 1.31561 1.37968 1.42444 1.75390 2.12134 2.47109 2.70071 3.21269 3.30988 3.42184 3.61458 3.65276 3.67007 3.82347 3.94865 4.06163 4.20981 4.27999 4.33884 4.48727 4.51790 4.65426 4.76106 4.77624 4.83101 4.89523 4.99849 5.02766 5.08496 5.15062 5.21336 5.30428 5.33983 5.37722 5.57268 5.60846 5.79094 6.22619 6.50310 6.65484 7.10592 7.20395 7.89362 8.05095 9.20123 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003846 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.111241 B = 7277.940406 C = 8169.034394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.042 0.958 4 C -0.121 4.121 5 C 0.142 3.858 6 H 0.052 0.948 7 C -0.152 4.152 8 N -0.697 5.697 9 C 0.559 3.441 10 O -0.572 6.572 11 C -0.172 4.172 12 C 0.133 3.867 13 N -0.488 5.488 14 C 0.187 3.813 15 C -0.237 4.237 16 S 0.183 5.817 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.006 4.006 20 N -0.749 5.749 21 C -0.213 4.213 22 H 0.052 0.948 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.947 3.053 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.244 1.244 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.411 0.589 38 H 0.189 0.811 39 H 0.203 0.797 40 H 0.202 0.798 41 H 0.140 0.860 42 H 0.362 0.638 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 7.934 -20.927 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.060 0.940 4 C -0.159 4.159 5 C 0.038 3.962 6 H 0.070 0.930 7 C -0.210 4.210 8 N -0.349 5.349 9 C 0.346 3.654 10 O -0.452 6.452 11 C -0.180 4.180 12 C -0.020 4.020 13 N -0.197 5.197 14 C 0.020 3.980 15 C -0.355 4.355 16 S 0.446 5.554 17 C -0.296 4.296 18 C -0.190 4.190 19 C -0.023 4.023 20 N -0.392 5.392 21 C -0.344 4.344 22 H 0.070 0.930 23 C -0.258 4.258 24 N -0.640 5.640 25 Si 0.776 3.224 26 H -0.219 1.219 27 H -0.224 1.224 28 H -0.169 1.169 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.249 0.751 38 H 0.205 0.795 39 H 0.219 0.781 40 H 0.219 0.781 41 H 0.158 0.842 42 H 0.195 0.805 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.731 9.309 -20.758 24.367 hybrid contribution -0.146 -2.780 1.313 3.078 sum 8.585 6.529 -19.444 22.235 Atomic orbital electron populations 1.22286 0.97187 1.01401 1.00825 1.20530 0.92905 0.95388 0.85392 0.94008 1.22162 0.92409 1.02944 0.98430 1.20990 0.95917 0.80510 0.98832 0.93019 1.22099 1.00429 1.00431 0.98041 1.45769 1.15580 1.12013 1.61565 1.18126 0.82490 0.87136 0.77632 1.90714 1.52474 1.57111 1.44950 1.20884 0.95714 0.95045 1.06328 1.23065 0.98871 0.87947 0.92114 1.67832 1.18117 1.14792 1.18988 1.23005 0.85962 1.00550 0.88507 1.24156 1.03442 0.97538 1.10328 1.83805 1.05275 1.07083 1.59228 1.26011 1.02953 0.97256 1.03352 1.20229 0.93062 1.02899 1.02805 1.18526 0.94179 0.93009 0.96601 1.42823 1.79909 1.09314 1.07177 1.18953 1.34049 0.93979 0.87452 0.93020 1.25419 1.02923 1.02147 0.95355 1.69879 1.55524 1.37537 1.01027 0.85509 0.78097 0.81663 0.77154 1.21860 1.22361 1.16869 0.92984 0.95700 0.90139 0.89279 0.86832 0.89845 0.94411 0.90483 0.75125 0.79460 0.78082 0.78092 0.84196 0.80499 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 9.49 71.98 0.68 -4.12 16 2 C 0.17 5.63 2.84 44.99 0.13 5.76 16 3 H 0.04 1.53 7.56 -2.39 -0.02 1.51 16 4 C -0.12 -2.91 4.29 30.59 0.13 -2.78 16 5 C 0.14 4.03 2.52 44.99 0.11 4.14 16 6 H 0.05 2.02 7.05 -2.39 -0.02 2.00 16 7 C -0.15 -3.42 9.48 71.98 0.68 -2.74 16 8 N -0.70 -18.99 4.40 -445.85 -1.96 -20.95 16 9 C 0.56 19.13 7.73 86.65 0.67 19.80 16 10 O -0.57 -24.35 14.13 -4.07 -0.06 -24.40 16 11 C -0.17 -5.18 5.94 -19.60 -0.12 -5.30 16 12 C 0.13 3.17 10.67 84.81 0.90 4.07 16 13 N -0.49 -11.26 10.32 -194.64 -2.01 -13.27 16 14 C 0.19 3.77 11.20 84.97 0.95 4.72 16 15 C -0.24 -5.55 6.52 22.98 0.15 -5.40 16 16 S 0.18 3.23 23.29 -56.49 -1.32 1.92 16 17 C -0.16 -3.43 11.10 66.69 0.74 -2.69 16 18 C -0.16 -4.78 9.43 21.57 0.20 -4.58 16 19 C -0.01 -0.19 5.88 -21.24 -0.12 -0.31 16 20 N -0.75 -34.34 4.30 -322.93 -1.39 -35.73 16 21 C -0.21 -12.37 10.41 84.04 0.87 -11.49 16 22 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 24 N -0.99 -66.03 13.97 21.65 0.30 -65.72 16 25 Si 0.95 47.97 27.74 68.60 1.90 49.87 16 26 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 27 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 28 H -0.24 -10.89 6.51 99.48 0.65 -10.24 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 8.09 6.64 -92.71 -0.62 7.47 16 38 H 0.19 3.17 6.37 -2.91 -0.02 3.15 16 39 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.14 4.91 6.28 -2.91 -0.02 4.89 16 42 H 0.36 16.23 5.66 -92.71 -0.52 15.71 16 43 H 0.25 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -83.04 369.06 1.79 -81.25 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.15 Total: 31.63 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 6.46 Total: -4.59 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -5.06 Total: -135.67 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.90 Total: 49.87 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.32 Total: 1.92 kcal Total: -83.04 1.79 -81.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.957 kcal (2) G-P(sol) polarization free energy of solvation -83.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds