Wall clock time and date at job start Tue Mar 31 2020 18:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47125 * 2 1 4 4 C 1.52995 * 109.47458 * 239.99663 * 2 1 3 5 5 C 1.52998 * 109.47201 * 175.00136 * 4 2 1 6 6 H 1.08997 * 109.47354 * 305.00030 * 5 4 2 7 7 C 1.53003 * 109.46944 * 184.99703 * 5 4 2 8 8 N 1.46501 * 109.47191 * 65.00230 * 5 4 2 9 9 C 1.34777 * 120.00260 * 204.99988 * 8 5 4 10 10 O 1.21614 * 119.99284 * 0.02562 * 9 8 5 11 11 C 1.47365 * 120.00192 * 179.97438 * 9 8 5 12 12 C 1.38760 * 120.55584 * 359.97438 * 11 9 8 13 13 N 1.31896 * 121.12482 * 179.97438 * 12 11 9 14 14 C 1.31674 * 122.21784 * 0.02562 * 13 12 11 15 15 C 1.39285 * 121.13882 * 359.97438 * 14 13 12 16 16 S 1.75879 * 131.39800 * 180.02562 * 15 14 13 17 17 C 1.75546 * 91.52653 * 179.74812 * 16 15 14 18 18 C 1.32475 * 110.79656 * 0.34060 * 17 16 15 19 19 C 1.40013 * 115.77668 * 359.58568 * 18 17 16 20 20 N 1.46500 * 109.46736 * 119.99421 * 2 1 3 21 21 C 1.36935 * 120.00212 * 275.00130 * 20 2 1 22 22 H 1.07997 * 120.00024 * 0.02562 * 21 20 2 23 23 C 1.38820 * 119.99829 * 180.02562 * 21 20 2 24 24 N 1.31615 * 119.99917 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99623 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47494 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47088 * 120.00455 * 25 23 21 28 28 H 1.48502 * 109.46816 * 240.00177 * 25 23 21 29 29 H 1.09005 * 109.47056 * 60.00564 * 1 2 3 30 30 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47573 * 300.00654 * 1 2 3 32 32 H 1.09002 * 109.47514 * 55.00222 * 4 2 1 33 33 H 1.09005 * 109.47211 * 294.99966 * 4 2 1 34 34 H 1.08990 * 109.47492 * 299.99931 * 7 5 4 35 35 H 1.09000 * 109.47099 * 60.00527 * 7 5 4 36 36 H 1.09010 * 109.47026 * 179.97438 * 7 5 4 37 37 H 0.97006 * 120.00194 * 24.99433 * 8 5 4 38 38 H 1.08007 * 119.43922 * 0.02562 * 12 11 9 39 39 H 1.07996 * 119.43137 * 179.97438 * 14 13 12 40 40 H 1.07998 * 124.60387 * 180.19688 * 17 16 15 41 41 H 1.08002 * 122.11567 * 179.86599 * 18 17 16 42 42 H 0.97008 * 119.99764 * 95.00522 * 20 2 1 43 43 H 0.97006 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 1 3.8571 0.4357 -1.2676 7 6 4.0646 -1.2252 -2.6238 8 7 4.1537 -1.3342 -0.1822 9 6 5.3748 -0.9911 0.2736 10 8 5.9875 -0.0828 -0.2540 11 6 5.9668 -1.7159 1.4120 12 6 5.2771 -2.7531 2.0235 13 7 5.7965 -3.4096 3.0428 14 6 6.9844 -3.1209 3.5318 15 6 7.7574 -2.0972 2.9891 16 16 9.3514 -1.4906 3.4186 17 6 9.2931 -0.2936 2.1359 18 6 8.1506 -0.3728 1.4702 19 6 7.2609 -1.3634 1.9033 20 7 2.0182 -0.6905 1.1963 21 6 2.1490 -0.0073 2.3758 22 1 1.8917 1.0405 2.4243 23 6 2.6121 -0.6616 3.5092 24 7 2.9260 -1.9384 3.4498 25 14 2.7897 0.2703 5.1184 26 1 2.3749 1.6824 4.9211 27 1 1.9295 -0.3591 6.1524 28 1 4.2067 0.2284 5.5608 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6055 -0.2619 -2.1370 33 1 1.7517 -1.7716 -1.2054 34 1 3.7724 -2.2742 -2.6697 35 1 3.6265 -0.6889 -3.4656 36 1 5.1509 -1.1479 -2.6699 37 1 3.6647 -2.0585 0.2389 38 1 4.2985 -3.0280 1.6582 39 1 7.3661 -3.6877 4.3681 40 1 10.0808 0.4132 1.9203 41 1 7.9216 0.2823 0.6426 42 1 2.2490 -1.6317 1.1528 43 1 3.2493 -2.3956 4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135268989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:57 Heat of formation + Delta-G solvation = 36.014214 kcal Electronic energy + Delta-G solvation = -27509.247486 eV Core-core repulsion = 23874.419795 eV Total energy + Delta-G solvation = -3634.827691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.32603 -38.79449 -36.79623 -35.88429 -34.19371 -32.51081 -31.51108 -29.99614 -29.86957 -28.53243 -26.37456 -24.26530 -24.07577 -23.68695 -21.37658 -20.75081 -20.17491 -19.84221 -17.96394 -17.25430 -16.91534 -15.98531 -15.70388 -15.44258 -14.82725 -14.60236 -14.09257 -13.89516 -13.78951 -13.70238 -13.68126 -13.28414 -12.92104 -12.71882 -12.25891 -12.16837 -11.95227 -11.79749 -11.79291 -11.69593 -11.64350 -11.05945 -10.87609 -10.78201 -10.72117 -10.40544 -10.26144 -9.94690 -9.76282 -9.63310 -9.44975 -9.01675 -8.91448 -8.72277 -8.42082 -7.55769 -6.97729 -5.85947 -3.08590 0.64939 1.27407 1.67475 2.07655 2.67402 3.39955 3.41788 3.47015 3.49042 3.74769 4.38108 4.55230 4.76406 4.90723 5.04751 5.14459 5.23057 5.38226 5.45463 5.49108 5.52143 5.64726 5.69164 5.77877 5.86603 5.92354 5.97780 6.02878 6.09855 6.17350 6.21329 6.33296 6.37665 6.43420 6.51690 6.55596 6.66779 6.81766 6.95892 7.01600 7.12202 7.65966 8.11175 8.33961 8.37558 8.82681 9.45267 9.96355 10.32009 11.36235 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.005617 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.821582 B = 4983.711069 C = 6559.393003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.692 5.692 9 C 0.579 3.421 10 O -0.559 6.559 11 C -0.158 4.158 12 C 0.189 3.811 13 N -0.461 5.461 14 C 0.168 3.832 15 C -0.222 4.222 16 S 0.082 5.918 17 C -0.184 4.184 18 C -0.114 4.114 19 C 0.015 3.985 20 N -0.715 5.715 21 C -0.222 4.222 22 H 0.068 0.932 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.897 3.103 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.294 1.294 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.403 0.597 38 H 0.171 0.829 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.376 0.624 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.324 -1.863 -7.263 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.344 5.344 9 C 0.366 3.634 10 O -0.440 6.440 11 C -0.166 4.166 12 C 0.035 3.965 13 N -0.170 5.170 14 C 0.000 4.000 15 C -0.340 4.340 16 S 0.342 5.658 17 C -0.320 4.320 18 C -0.144 4.144 19 C -0.001 4.001 20 N -0.358 5.358 21 C -0.353 4.353 22 H 0.086 0.914 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.729 3.271 26 H -0.209 1.209 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.241 0.759 38 H 0.188 0.812 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.181 0.819 42 H 0.211 0.789 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.237 -2.089 -6.099 10.460 hybrid contribution -0.767 1.103 0.039 1.344 sum 7.470 -0.987 -6.060 9.670 Atomic orbital electron populations 1.22409 0.99183 1.00767 0.99958 1.20301 0.91748 0.95770 0.86308 0.93349 1.22222 0.93910 1.01693 0.99455 1.20826 0.92509 0.97328 0.84758 0.89748 1.22210 1.01824 1.00870 0.97182 1.45886 1.17451 1.37479 1.33575 1.17651 0.81231 0.82574 0.81911 1.90628 1.62209 1.31144 1.60015 1.20718 0.94552 1.00843 1.00488 1.22774 0.96778 0.88584 0.88381 1.67744 1.09857 1.28622 1.10734 1.22317 0.89162 0.91740 0.96804 1.23663 1.01107 1.05277 1.03908 1.83859 1.13878 1.32321 1.35702 1.25394 1.02279 1.04026 1.00268 1.20283 0.92378 0.99286 1.02437 1.18211 0.93909 0.94357 0.93609 1.42474 1.77752 1.10056 1.05483 1.19252 1.35111 0.93808 0.87142 0.91435 1.24537 1.02455 0.96073 0.97506 1.69427 1.50204 1.08074 1.29115 0.86252 0.77265 0.78889 0.84668 1.20893 1.21962 1.22119 0.94555 0.93558 0.92874 0.90676 0.91666 0.92748 0.92070 0.92356 0.75874 0.81245 0.82804 0.81463 0.81936 0.78921 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.33 16 2 C 0.17 2.99 2.89 -67.93 -0.20 2.80 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.15 2.32 2.58 -67.93 -0.17 2.14 16 6 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 7 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16 8 N -0.69 -12.10 3.75 -54.90 -0.21 -12.31 16 9 C 0.58 11.51 7.73 -12.55 -0.10 11.41 16 10 O -0.56 -11.91 14.13 5.27 0.07 -11.83 16 11 C -0.16 -3.15 5.94 -104.21 -0.62 -3.77 16 12 C 0.19 3.72 9.00 -17.33 -0.16 3.57 16 13 N -0.46 -8.92 10.32 -12.88 -0.13 -9.05 16 14 C 0.17 2.89 11.20 -17.23 -0.19 2.69 16 15 C -0.22 -3.83 6.52 -38.48 -0.25 -4.08 16 16 S 0.08 1.13 23.29 -107.50 -2.50 -1.38 16 17 C -0.18 -2.57 11.10 28.82 0.32 -2.25 16 18 C -0.11 -1.94 9.43 -40.83 -0.39 -2.33 16 19 C 0.02 0.28 5.88 -106.74 -0.63 -0.34 16 20 N -0.72 -15.38 3.84 -53.43 -0.21 -15.59 16 21 C -0.22 -5.62 9.93 -15.06 -0.15 -5.77 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -23.72 10.74 55.49 0.60 -23.13 16 25 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.40 7.04 4.55 -40.82 -0.19 6.86 16 38 H 0.17 3.37 5.81 -52.48 -0.30 3.06 16 39 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.16 2.87 6.28 -52.49 -0.33 2.54 16 42 H 0.38 8.19 5.70 -40.82 -0.23 7.96 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -28.36 363.44 -9.60 -37.97 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -5.64 Total: 15.08 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.04 Total: -2.37 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.05 Total: -60.07 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.36 -9.60 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.980 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds