Wall clock time and date at job start Tue Mar 31 2020 18:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47125 * 2 1 4 4 C 1.52995 * 109.47458 * 239.99663 * 2 1 3 5 5 C 1.52998 * 109.47201 * 175.00136 * 4 2 1 6 6 H 1.08997 * 109.47354 * 305.00030 * 5 4 2 7 7 C 1.53003 * 109.46944 * 184.99703 * 5 4 2 8 8 N 1.46501 * 109.47191 * 65.00230 * 5 4 2 9 9 C 1.34777 * 120.00260 * 204.99988 * 8 5 4 10 10 O 1.21614 * 119.99284 * 0.02562 * 9 8 5 11 11 C 1.47365 * 120.00192 * 179.97438 * 9 8 5 12 12 C 1.38760 * 120.55584 * 359.97438 * 11 9 8 13 13 N 1.31896 * 121.12482 * 179.97438 * 12 11 9 14 14 C 1.31674 * 122.21784 * 0.02562 * 13 12 11 15 15 C 1.39285 * 121.13882 * 359.97438 * 14 13 12 16 16 S 1.75879 * 131.39800 * 180.02562 * 15 14 13 17 17 C 1.75546 * 91.52653 * 179.74812 * 16 15 14 18 18 C 1.32475 * 110.79656 * 0.34060 * 17 16 15 19 19 C 1.40013 * 115.77668 * 359.58568 * 18 17 16 20 20 N 1.46500 * 109.46736 * 119.99421 * 2 1 3 21 21 C 1.36935 * 120.00212 * 275.00130 * 20 2 1 22 22 H 1.07997 * 120.00024 * 0.02562 * 21 20 2 23 23 C 1.38820 * 119.99829 * 180.02562 * 21 20 2 24 24 N 1.31615 * 119.99917 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99623 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47494 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47088 * 120.00455 * 25 23 21 28 28 H 1.48502 * 109.46816 * 240.00177 * 25 23 21 29 29 H 1.09005 * 109.47056 * 60.00564 * 1 2 3 30 30 H 1.08999 * 109.47125 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47573 * 300.00654 * 1 2 3 32 32 H 1.09002 * 109.47514 * 55.00222 * 4 2 1 33 33 H 1.09005 * 109.47211 * 294.99966 * 4 2 1 34 34 H 1.08990 * 109.47492 * 299.99931 * 7 5 4 35 35 H 1.09000 * 109.47099 * 60.00527 * 7 5 4 36 36 H 1.09010 * 109.47026 * 179.97438 * 7 5 4 37 37 H 0.97006 * 120.00194 * 24.99433 * 8 5 4 38 38 H 1.08007 * 119.43922 * 0.02562 * 12 11 9 39 39 H 1.07996 * 119.43137 * 179.97438 * 14 13 12 40 40 H 1.07998 * 124.60387 * 180.19688 * 17 16 15 41 41 H 1.08002 * 122.11567 * 179.86599 * 18 17 16 42 42 H 0.97008 * 119.99764 * 95.00522 * 20 2 1 43 43 H 0.97006 * 119.99484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 1 3.8571 0.4357 -1.2676 7 6 4.0646 -1.2252 -2.6238 8 7 4.1537 -1.3342 -0.1822 9 6 5.3748 -0.9911 0.2736 10 8 5.9875 -0.0828 -0.2540 11 6 5.9668 -1.7159 1.4120 12 6 5.2771 -2.7531 2.0235 13 7 5.7965 -3.4096 3.0428 14 6 6.9844 -3.1209 3.5318 15 6 7.7574 -2.0972 2.9891 16 16 9.3514 -1.4906 3.4186 17 6 9.2931 -0.2936 2.1359 18 6 8.1506 -0.3728 1.4702 19 6 7.2609 -1.3634 1.9033 20 7 2.0182 -0.6905 1.1963 21 6 2.1490 -0.0073 2.3758 22 1 1.8917 1.0405 2.4243 23 6 2.6121 -0.6616 3.5092 24 7 2.9260 -1.9384 3.4498 25 14 2.7897 0.2703 5.1184 26 1 2.3749 1.6824 4.9211 27 1 1.9295 -0.3591 6.1524 28 1 4.2067 0.2284 5.5608 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6055 -0.2619 -2.1370 33 1 1.7517 -1.7716 -1.2054 34 1 3.7724 -2.2742 -2.6697 35 1 3.6265 -0.6889 -3.4656 36 1 5.1509 -1.1479 -2.6699 37 1 3.6647 -2.0585 0.2389 38 1 4.2985 -3.0280 1.6582 39 1 7.3661 -3.6877 4.3681 40 1 10.0808 0.4132 1.9203 41 1 7.9216 0.2823 0.6426 42 1 2.2490 -1.6317 1.1528 43 1 3.2493 -2.3956 4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135268989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:56 Heat of formation + Delta-G solvation = 19.848325 kcal Electronic energy + Delta-G solvation = -27509.948491 eV Core-core repulsion = 23874.419795 eV Total energy + Delta-G solvation = -3635.528697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72187 -40.19801 -38.27472 -37.20841 -35.75143 -34.14447 -33.02443 -31.41257 -31.19514 -30.11706 -27.58861 -25.67729 -25.55842 -25.34043 -22.71029 -22.09578 -21.54756 -21.27816 -19.28223 -19.09423 -18.33227 -17.33754 -17.05766 -16.84171 -16.53481 -16.06308 -15.56700 -15.51999 -15.24450 -15.06866 -14.98283 -14.75509 -14.30557 -14.14833 -13.57840 -13.57650 -13.31756 -13.20894 -13.12983 -12.96888 -12.93206 -12.79487 -12.61110 -12.28854 -12.14852 -11.94010 -11.70472 -11.60695 -11.40035 -11.11202 -10.93032 -10.77115 -10.37961 -10.03706 -9.83939 -8.87436 -8.69239 -7.83767 -5.03657 -0.68563 -0.10632 0.46140 0.84910 1.35603 1.38476 1.44196 1.46992 1.94437 2.37724 2.57964 2.93996 3.43626 3.51295 3.65041 3.79683 3.80506 3.90474 4.04318 4.18617 4.21102 4.35288 4.41311 4.45950 4.58479 4.67905 4.71258 4.85071 4.87329 4.89128 4.94668 5.09466 5.12844 5.15189 5.16982 5.34076 5.38598 5.43783 5.54840 5.62253 5.65024 5.76919 6.38045 6.65840 6.96486 7.34871 7.47466 8.18166 8.45373 9.35345 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.005617 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.821582 B = 4983.711069 C = 6559.393003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.059 0.941 7 C -0.152 4.152 8 N -0.686 5.686 9 C 0.571 3.429 10 O -0.583 6.583 11 C -0.184 4.184 12 C 0.187 3.813 13 N -0.486 5.486 14 C 0.171 3.829 15 C -0.247 4.247 16 S 0.157 5.843 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.005 4.005 20 N -0.718 5.718 21 C -0.223 4.223 22 H 0.053 0.947 23 C -0.045 4.045 24 N -0.921 5.921 25 Si 0.930 3.070 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.310 1.310 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.402 0.598 38 H 0.161 0.839 39 H 0.189 0.811 40 H 0.208 0.792 41 H 0.149 0.851 42 H 0.374 0.626 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 -2.087 -7.980 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.042 3.958 6 H 0.078 0.922 7 C -0.210 4.210 8 N -0.337 5.337 9 C 0.359 3.641 10 O -0.465 6.465 11 C -0.192 4.192 12 C 0.034 3.966 13 N -0.195 5.195 14 C 0.003 3.997 15 C -0.364 4.364 16 S 0.418 5.582 17 C -0.294 4.294 18 C -0.182 4.182 19 C -0.022 4.022 20 N -0.361 5.361 21 C -0.356 4.356 22 H 0.071 0.929 23 C -0.240 4.240 24 N -0.571 5.571 25 Si 0.764 3.236 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.239 1.239 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.241 0.759 38 H 0.178 0.822 39 H 0.206 0.794 40 H 0.225 0.775 41 H 0.166 0.834 42 H 0.209 0.791 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.335 -2.319 -6.847 11.807 hybrid contribution -0.927 1.220 0.283 1.558 sum 8.408 -1.099 -6.565 10.723 Atomic orbital electron populations 1.22263 0.97629 1.01040 1.00361 1.20500 0.92744 0.94919 0.86515 0.95300 1.22143 0.92681 1.02226 0.98793 1.20997 0.93443 0.96012 0.85335 0.92243 1.22109 1.00650 1.01900 0.96321 1.45950 1.16699 1.37180 1.33825 1.17836 0.81819 0.82416 0.82011 1.90596 1.62953 1.32158 1.60841 1.20859 0.95679 1.01461 1.01183 1.22615 0.96572 0.88750 0.88674 1.67730 1.11235 1.29434 1.11126 1.22897 0.88349 0.91540 0.96919 1.24035 1.03405 1.05283 1.03682 1.83618 1.10184 1.30422 1.33934 1.25944 1.01577 1.03385 0.98544 1.20193 0.93840 1.00239 1.03916 1.18554 0.94002 0.95242 0.94355 1.42492 1.78053 1.09895 1.05629 1.19234 1.34504 0.93294 0.88543 0.92902 1.24872 1.03644 0.96765 0.98694 1.69508 1.51185 1.07968 1.28396 0.85719 0.75927 0.78384 0.83548 1.20909 1.22320 1.23852 0.91259 0.93270 0.95356 0.87095 0.90430 0.91336 0.89354 0.94233 0.75918 0.82204 0.79418 0.77530 0.83380 0.79129 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 9.49 71.98 0.68 -4.14 16 2 C 0.16 5.66 2.89 44.99 0.13 5.79 16 3 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 4 C -0.12 -3.17 4.43 30.59 0.14 -3.04 16 5 C 0.15 4.44 2.58 44.99 0.12 4.55 16 6 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 7 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 8 N -0.69 -24.60 3.75 -445.85 -1.67 -26.27 16 9 C 0.57 23.70 7.73 86.65 0.67 24.37 16 10 O -0.58 -25.96 14.13 -4.08 -0.06 -26.01 16 11 C -0.18 -7.63 5.94 -19.60 -0.12 -7.75 16 12 C 0.19 7.65 9.00 84.81 0.76 8.41 16 13 N -0.49 -19.08 10.32 -194.65 -2.01 -21.09 16 14 C 0.17 5.73 11.20 84.97 0.95 6.69 16 15 C -0.25 -8.26 6.52 22.98 0.15 -8.11 16 16 S 0.16 3.83 23.29 -56.49 -1.32 2.51 16 17 C -0.16 -4.00 11.10 66.69 0.74 -3.26 16 18 C -0.15 -5.16 9.43 21.57 0.20 -4.96 16 19 C -0.01 -0.19 5.88 -21.24 -0.12 -0.32 16 20 N -0.72 -31.35 3.84 -322.95 -1.24 -32.59 16 21 C -0.22 -11.58 9.93 84.04 0.83 -10.74 16 22 H 0.05 2.85 7.83 -2.91 -0.02 2.83 16 23 C -0.04 -2.39 5.50 84.86 0.47 -1.92 16 24 N -0.92 -48.63 10.74 21.65 0.23 -48.40 16 25 Si 0.93 46.42 29.55 68.60 2.03 48.45 16 26 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 28 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.40 14.48 4.55 -92.70 -0.42 14.06 16 38 H 0.16 6.67 5.81 -2.91 -0.02 6.65 16 39 H 0.19 4.76 8.06 -2.91 -0.02 4.73 16 40 H 0.21 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.15 5.41 6.28 -2.91 -0.02 5.39 16 42 H 0.37 16.55 5.70 -92.70 -0.53 16.02 16 43 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 Total: -1.00 -64.38 363.44 2.35 -62.03 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: 0.10 Total: 38.79 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.29 Total: 2.59 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -4.69 Total: -128.35 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.06 Total: -26.01 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.32 Total: 2.51 kcal Total: -64.38 2.35 -62.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.878 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds