Wall clock time and date at job start Tue Mar 31 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21606 * 120.00526 * 359.97438 * 9 8 5 11 11 C 1.47376 * 119.99624 * 180.02562 * 9 8 5 12 12 C 1.38757 * 120.55001 * 359.71783 * 11 9 8 13 13 N 1.31908 * 121.11645 * 179.72849 * 12 11 9 14 14 C 1.31677 * 122.21798 * 0.59071 * 13 12 11 15 15 C 1.39285 * 121.13872 * 359.67686 * 14 13 12 16 16 S 1.75880 * 131.39801 * 180.02562 * 15 14 13 17 17 C 1.75545 * 91.52606 * 180.02562 * 16 15 14 18 18 C 1.32480 * 110.79555 * 359.97438 * 17 16 15 19 19 C 1.40006 * 115.77666 * 0.02562 * 18 17 16 20 20 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 30 30 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 31 31 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 33 33 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 34 34 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 35 35 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 37 37 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 38 38 H 1.07997 * 119.44434 * 0.02562 * 12 11 9 39 39 H 1.07999 * 119.42520 * 179.70069 * 14 13 12 40 40 H 1.08002 * 124.60475 * 179.97438 * 17 16 15 41 41 H 1.07995 * 122.10760 * 180.02562 * 18 17 16 42 42 H 0.97004 * 119.99747 * 265.00379 * 20 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9380 0.4318 0.5725 11 6 5.5468 2.6244 1.2668 12 6 4.6676 3.5272 1.8476 13 7 5.0031 4.7913 2.0192 14 6 6.1729 5.2645 1.6430 15 6 7.1243 4.4413 1.0453 16 16 8.7439 4.7788 0.4483 17 6 8.9601 3.1086 -0.0471 18 6 7.8814 2.3919 0.2319 19 6 6.8295 3.0867 0.8410 20 7 2.0183 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4242 23 6 2.6112 -0.6619 -3.5093 24 7 2.9290 -1.9378 -3.4489 25 14 2.7902 0.2701 -5.1183 26 1 3.3049 -0.6469 -6.1669 27 1 1.4669 0.8022 -5.5320 28 1 3.7411 1.3958 -4.9350 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8001 -2.4819 2.3594 35 1 5.1715 -1.3617 2.5381 36 1 3.6546 -1.0593 3.4193 37 1 3.3285 1.4129 1.9027 38 1 3.6939 3.1881 2.1690 39 1 6.3986 6.3087 1.8009 40 1 9.8515 2.7183 -0.5156 41 1 7.8176 1.3382 0.0038 42 1 2.2489 -1.6318 -1.1526 43 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135268991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:02 Heat of formation + Delta-G solvation = 28.569228 kcal Electronic energy + Delta-G solvation = -26393.962402 eV Core-core repulsion = 22758.811872 eV Total energy + Delta-G solvation = -3635.150530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94572 -39.19381 -37.00166 -36.42508 -34.63507 -32.68725 -31.94113 -30.51786 -30.17129 -28.31041 -26.41968 -24.88927 -24.63228 -23.40940 -21.72810 -21.21793 -20.55325 -19.89938 -18.57147 -17.61276 -17.28718 -16.54139 -16.17427 -15.73521 -15.16866 -14.85824 -14.53570 -14.27480 -14.24222 -14.16043 -13.72348 -13.55456 -13.23151 -13.02426 -12.86676 -12.42140 -12.21308 -12.15919 -12.12871 -11.72095 -11.71664 -11.15234 -11.05500 -10.73919 -10.51352 -10.47619 -10.30595 -10.11688 -10.06448 -9.93250 -9.51369 -9.26370 -9.11889 -8.87863 -8.84217 -8.08844 -6.97887 -6.03640 -3.03036 0.07897 0.54695 1.18293 1.62511 2.17333 2.86500 3.22967 3.54056 3.58226 3.71559 3.74939 4.05632 4.29517 4.51605 4.59022 4.71699 4.87275 4.97353 5.08965 5.15669 5.30908 5.33111 5.40126 5.58072 5.65671 5.71468 5.79117 5.84542 5.91302 5.96455 6.03092 6.12679 6.19060 6.20607 6.27454 6.35434 6.46025 6.57704 6.70235 6.83294 6.99938 7.54221 7.63126 7.85559 8.36022 8.81688 9.28528 10.14642 10.29131 11.44759 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004015 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.725056 B = 6971.778615 C = 8216.484705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.564 3.436 10 O -0.523 6.523 11 C -0.139 4.139 12 C 0.123 3.877 13 N -0.475 5.475 14 C 0.176 3.824 15 C -0.216 4.216 16 S 0.113 5.887 17 C -0.172 4.172 18 C -0.120 4.120 19 C 0.018 3.982 20 N -0.731 5.731 21 C -0.325 4.325 22 H 0.060 0.940 23 C -0.043 4.043 24 N -0.943 5.943 25 Si 1.075 2.925 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.297 1.297 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.393 0.607 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.170 0.830 42 H 0.366 0.634 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 11.900 15.003 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.041 3.959 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.359 5.359 9 C 0.350 3.650 10 O -0.400 6.400 11 C -0.146 4.146 12 C -0.031 4.031 13 N -0.184 5.184 14 C 0.008 3.992 15 C -0.333 4.333 16 S 0.375 5.625 17 C -0.307 4.307 18 C -0.149 4.149 19 C 0.001 3.999 20 N -0.374 5.374 21 C -0.456 4.456 22 H 0.078 0.922 23 C -0.241 4.241 24 N -0.589 5.589 25 Si 0.906 3.094 26 H -0.210 1.210 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.228 0.772 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.187 0.813 42 H 0.199 0.801 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.142 13.175 13.292 20.829 hybrid contribution -1.123 -1.575 1.393 2.384 sum 8.019 11.599 14.685 20.359 Atomic orbital electron populations 1.22440 0.99394 1.00745 0.99939 1.20160 0.91610 0.95509 0.86063 0.93546 1.22204 0.93643 1.02278 0.99052 1.21050 0.95163 0.79738 0.99900 0.87804 1.22188 1.01622 1.00159 0.97985 1.45869 1.15969 1.11902 1.62205 1.17727 0.82382 0.86477 0.78439 1.90752 1.50926 1.55717 1.42570 1.20930 0.94485 0.95643 1.03578 1.22708 0.98533 0.88206 0.93621 1.67722 1.17472 1.15172 1.18014 1.22348 0.86922 0.99184 0.90716 1.23854 1.01557 0.98279 1.09633 1.84086 1.07728 1.09449 1.61254 1.25590 1.03268 0.96185 1.05680 1.20350 0.91246 1.03585 0.99691 1.18272 0.93927 0.91639 0.96062 1.42399 1.79136 1.09659 1.06251 1.19943 1.41755 0.94828 0.89091 0.92158 1.25643 0.99466 0.97514 1.01445 1.70877 1.51238 1.08397 1.28379 0.83316 0.75787 0.74393 0.75905 1.21022 1.22375 1.22435 0.94546 0.92819 0.93650 0.91772 0.90592 0.91634 0.92407 0.92945 0.77177 0.82008 0.81788 0.80702 0.81276 0.80109 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.18 3.33 2.84 -67.93 -0.19 3.13 16 3 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 4 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16 5 C 0.15 2.27 2.52 -67.93 -0.17 2.10 16 6 H 0.10 2.14 7.05 -51.93 -0.37 1.77 16 7 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 8 N -0.71 -10.22 4.40 -54.90 -0.24 -10.46 16 9 C 0.56 9.44 7.73 -12.54 -0.10 9.34 16 10 O -0.52 -10.56 14.13 5.27 0.07 -10.48 16 11 C -0.14 -2.04 5.94 -104.21 -0.62 -2.66 16 12 C 0.12 1.52 10.67 -17.33 -0.18 1.34 16 13 N -0.48 -5.84 10.32 -12.88 -0.13 -5.98 16 14 C 0.18 1.93 11.20 -17.23 -0.19 1.74 16 15 C -0.22 -2.61 6.52 -38.48 -0.25 -2.86 16 16 S 0.11 1.10 23.29 -107.50 -2.50 -1.41 16 17 C -0.17 -1.86 11.10 28.82 0.32 -1.54 16 18 C -0.12 -1.67 9.43 -40.84 -0.39 -2.06 16 19 C 0.02 0.26 5.88 -106.74 -0.63 -0.37 16 20 N -0.73 -17.83 4.49 -53.43 -0.24 -18.07 16 21 C -0.33 -9.15 9.93 -15.06 -0.15 -9.30 16 22 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 23 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 24 N -0.94 -29.54 13.70 55.49 0.76 -28.78 16 25 Si 1.07 26.82 29.92 -169.99 -5.09 21.73 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.39 4.47 6.64 -40.82 -0.27 4.20 16 38 H 0.16 1.55 6.37 -52.49 -0.33 1.21 16 39 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.17 2.65 6.28 -52.49 -0.33 2.32 16 42 H 0.37 9.29 6.63 -40.82 -0.27 9.02 16 43 H 0.25 7.82 6.77 -40.82 -0.28 7.55 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -34.74 370.48 -9.52 -44.26 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.68 Total: 12.50 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.06 Total: -8.89 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.15 Total: -63.29 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -5.09 Total: 21.73 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.74 -9.52 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.824 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds