Wall clock time and date at job start Tue Mar 31 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21606 * 120.00526 * 359.97438 * 9 8 5 11 11 C 1.47376 * 119.99624 * 180.02562 * 9 8 5 12 12 C 1.38757 * 120.55001 * 359.71783 * 11 9 8 13 13 N 1.31908 * 121.11645 * 179.72849 * 12 11 9 14 14 C 1.31677 * 122.21798 * 0.59071 * 13 12 11 15 15 C 1.39285 * 121.13872 * 359.67686 * 14 13 12 16 16 S 1.75880 * 131.39801 * 180.02562 * 15 14 13 17 17 C 1.75545 * 91.52606 * 180.02562 * 16 15 14 18 18 C 1.32480 * 110.79555 * 359.97438 * 17 16 15 19 19 C 1.40006 * 115.77666 * 0.02562 * 18 17 16 20 20 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 30 30 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 31 31 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 33 33 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 34 34 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 35 35 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 37 37 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 38 38 H 1.07997 * 119.44434 * 0.02562 * 12 11 9 39 39 H 1.07999 * 119.42520 * 179.70069 * 14 13 12 40 40 H 1.08002 * 124.60475 * 179.97438 * 17 16 15 41 41 H 1.07995 * 122.10760 * 180.02562 * 18 17 16 42 42 H 0.97004 * 119.99747 * 265.00379 * 20 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9380 0.4318 0.5725 11 6 5.5468 2.6244 1.2668 12 6 4.6676 3.5272 1.8476 13 7 5.0031 4.7913 2.0192 14 6 6.1729 5.2645 1.6430 15 6 7.1243 4.4413 1.0453 16 16 8.7439 4.7788 0.4483 17 6 8.9601 3.1086 -0.0471 18 6 7.8814 2.3919 0.2319 19 6 6.8295 3.0867 0.8410 20 7 2.0183 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4242 23 6 2.6112 -0.6619 -3.5093 24 7 2.9290 -1.9378 -3.4489 25 14 2.7902 0.2701 -5.1183 26 1 3.3049 -0.6469 -6.1669 27 1 1.4669 0.8022 -5.5320 28 1 3.7411 1.3958 -4.9350 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8001 -2.4819 2.3594 35 1 5.1715 -1.3617 2.5381 36 1 3.6546 -1.0593 3.4193 37 1 3.3285 1.4129 1.9027 38 1 3.6939 3.1881 2.1690 39 1 6.3986 6.3087 1.8009 40 1 9.8515 2.7183 -0.5156 41 1 7.8176 1.3382 0.0038 42 1 2.2489 -1.6318 -1.1526 43 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135268991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:01 Heat of formation + Delta-G solvation = 5.070979 kcal Electronic energy + Delta-G solvation = -26394.981362 eV Core-core repulsion = 22758.811872 eV Total energy + Delta-G solvation = -3636.169490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96323 -40.38790 -38.45091 -37.43474 -36.24533 -34.30405 -33.30923 -31.46133 -31.33665 -30.16792 -27.68974 -25.92494 -25.61485 -25.48283 -22.91960 -22.23086 -21.85930 -21.32533 -19.68723 -19.37379 -18.56786 -17.50664 -17.22183 -16.93416 -16.69164 -16.28679 -15.96922 -15.50263 -15.48648 -15.29149 -15.14616 -14.93866 -14.68620 -14.41615 -13.78826 -13.58093 -13.47612 -13.35327 -13.19046 -13.11863 -12.93466 -12.79580 -12.55684 -12.21650 -12.05168 -11.93509 -11.88625 -11.59479 -11.40179 -11.19393 -11.04299 -10.92386 -10.65685 -10.21912 -10.08475 -9.06303 -8.93905 -8.35890 -5.27112 -0.90108 -0.37977 0.33875 0.71834 1.18679 1.50368 1.60790 1.72292 1.76375 2.07472 2.67258 2.68746 3.18316 3.39890 3.42685 3.58797 3.64715 3.70736 3.84560 3.92460 4.01488 4.18415 4.26090 4.28557 4.45004 4.47077 4.59502 4.70531 4.73744 4.76549 4.83781 4.93615 5.00730 5.01345 5.11454 5.17111 5.24708 5.29880 5.33349 5.51646 5.53419 5.62807 6.46328 6.52828 6.63103 7.14648 7.17158 8.05755 8.15908 9.16416 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004015 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.725056 B = 6971.778615 C = 8216.484705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.040 0.960 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.045 0.955 7 C -0.151 4.151 8 N -0.697 5.697 9 C 0.558 3.442 10 O -0.573 6.573 11 C -0.172 4.172 12 C 0.133 3.867 13 N -0.488 5.488 14 C 0.188 3.812 15 C -0.237 4.237 16 S 0.188 5.812 17 C -0.159 4.159 18 C -0.162 4.162 19 C -0.006 4.006 20 N -0.743 5.743 21 C -0.315 4.315 22 H 0.058 0.942 23 C -0.107 4.107 24 N -0.977 5.977 25 Si 1.117 2.883 26 H -0.292 1.292 27 H -0.274 1.274 28 H -0.288 1.288 29 H 0.079 0.921 30 H 0.026 0.974 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.410 0.590 38 H 0.187 0.813 39 H 0.204 0.796 40 H 0.202 0.798 41 H 0.138 0.862 42 H 0.357 0.643 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 14.970 16.876 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.058 0.942 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.064 0.936 7 C -0.209 4.209 8 N -0.349 5.349 9 C 0.345 3.655 10 O -0.453 6.453 11 C -0.180 4.180 12 C -0.019 4.019 13 N -0.197 5.197 14 C 0.021 3.979 15 C -0.354 4.354 16 S 0.451 5.549 17 C -0.295 4.295 18 C -0.191 4.191 19 C -0.023 4.023 20 N -0.386 5.386 21 C -0.447 4.447 22 H 0.076 0.924 23 C -0.298 4.298 24 N -0.626 5.626 25 Si 0.943 3.057 26 H -0.218 1.218 27 H -0.200 1.200 28 H -0.215 1.215 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.203 0.797 39 H 0.221 0.779 40 H 0.219 0.781 41 H 0.156 0.844 42 H 0.189 0.811 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.644 16.300 15.236 23.928 hybrid contribution -0.898 -2.391 0.882 2.702 sum 7.746 13.908 16.118 22.654 Atomic orbital electron populations 1.22292 0.97587 1.00877 1.00777 1.20467 0.92680 0.95112 0.85745 0.94214 1.22112 0.92605 1.02423 0.98601 1.20866 0.95692 0.80592 0.98472 0.93638 1.22084 1.00425 1.00285 0.98097 1.45748 1.15673 1.11825 1.61616 1.18194 0.82392 0.87305 0.77624 1.90727 1.52431 1.57220 1.44925 1.20849 0.95804 0.94717 1.06594 1.23030 0.98824 0.87998 0.92081 1.67844 1.18239 1.14742 1.18833 1.23028 0.85939 1.00560 0.88338 1.24162 1.03473 0.97435 1.10359 1.83796 1.05114 1.06870 1.59119 1.26018 1.02864 0.97337 1.03233 1.20220 0.93146 1.02825 1.02956 1.18511 0.94114 0.93060 0.96568 1.42605 1.79471 1.09376 1.07104 1.20226 1.39302 0.94748 0.90397 0.92417 1.26921 1.00246 0.97725 1.04914 1.70975 1.54121 1.09582 1.27955 0.82760 0.76820 0.73488 0.72626 1.21808 1.20026 1.21530 0.90177 0.95445 0.93869 0.87094 0.90276 0.90928 0.94364 0.89710 0.75186 0.79653 0.77935 0.78071 0.84426 0.81149 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.49 71.98 0.68 -4.45 16 2 C 0.17 6.20 2.84 44.99 0.13 6.33 16 3 H 0.04 1.52 7.56 -2.39 -0.02 1.51 16 4 C -0.12 -3.31 4.29 30.59 0.13 -3.18 16 5 C 0.15 4.71 2.52 44.99 0.11 4.82 16 6 H 0.05 2.01 7.05 -2.39 -0.02 2.00 16 7 C -0.15 -3.90 9.48 71.98 0.68 -3.22 16 8 N -0.70 -20.26 4.40 -445.86 -1.96 -22.22 16 9 C 0.56 19.75 7.73 86.65 0.67 20.42 16 10 O -0.57 -25.40 14.13 -4.05 -0.06 -25.46 16 11 C -0.17 -5.19 5.94 -19.60 -0.12 -5.31 16 12 C 0.13 3.16 10.67 84.81 0.90 4.06 16 13 N -0.49 -10.93 10.32 -194.65 -2.01 -12.94 16 14 C 0.19 3.64 11.20 84.97 0.95 4.59 16 15 C -0.24 -5.36 6.52 22.98 0.15 -5.21 16 16 S 0.19 3.16 23.29 -56.49 -1.32 1.84 16 17 C -0.16 -3.32 11.10 66.69 0.74 -2.58 16 18 C -0.16 -4.80 9.43 21.57 0.20 -4.60 16 19 C -0.01 -0.17 5.88 -21.24 -0.12 -0.29 16 20 N -0.74 -37.25 4.49 -322.95 -1.45 -38.70 16 21 C -0.31 -18.16 9.93 84.03 0.83 -17.33 16 22 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 23 C -0.11 -6.47 5.50 84.86 0.47 -6.01 16 24 N -0.98 -63.68 13.70 21.65 0.30 -63.38 16 25 Si 1.12 55.18 29.92 68.60 2.05 57.23 16 26 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 8.72 6.64 -92.71 -0.62 8.10 16 38 H 0.19 3.18 6.37 -2.91 -0.02 3.16 16 39 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 40 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.14 4.90 6.28 -2.91 -0.02 4.88 16 42 H 0.36 18.99 6.63 -92.71 -0.61 18.38 16 43 H 0.24 15.76 6.77 -92.71 -0.63 15.13 16 Total: -1.00 -81.62 370.48 1.94 -79.68 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.03 Total: 35.90 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 6.42 Total: -11.95 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -5.12 Total: -137.24 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.46 kcal Atomic # 14 Polarization: 55.18 SS G_CDS: 2.05 Total: 57.23 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.32 Total: 1.84 kcal Total: -81.62 1.94 -79.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.749 kcal (2) G-P(sol) polarization free energy of solvation -81.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds