Wall clock time and date at job start Tue Mar 31 2020 18:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47038 * 2 1 4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3 5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.36932 * 120.00140 * 205.00132 * 8 5 4 10 10 H 1.07994 * 120.00447 * 359.97438 * 9 8 5 11 11 C 1.38813 * 119.99838 * 180.02562 * 9 8 5 12 12 N 1.31623 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46920 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47001 * 120.00056 * 13 11 9 16 16 H 1.48500 * 109.47076 * 239.99780 * 13 11 9 17 17 N 1.46503 * 109.47413 * 120.00380 * 2 1 3 18 18 C 1.34776 * 119.99872 * 275.00321 * 17 2 1 19 19 O 1.21618 * 120.00057 * 359.97438 * 18 17 2 20 20 C 1.47365 * 120.00170 * 180.02562 * 18 17 2 21 21 C 1.38764 * 120.55288 * 359.71556 * 20 18 17 22 22 N 1.31902 * 121.12130 * 179.68100 * 21 20 18 23 23 C 1.31675 * 122.21526 * 0.63611 * 22 21 20 24 24 C 1.39285 * 121.13974 * 359.65952 * 23 22 21 25 25 S 1.75885 * 131.39448 * 180.02562 * 24 23 22 26 26 C 1.75554 * 91.52275 * 179.97438 * 25 24 23 27 27 C 1.32472 * 110.79412 * 0.02562 * 26 25 24 28 28 C 1.40010 * 115.78247 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47551 * 60.00098 * 1 2 3 30 30 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47226 * 299.99876 * 1 2 3 32 32 H 1.08998 * 109.47250 * 54.99993 * 4 2 1 33 33 H 1.08998 * 109.47252 * 294.99917 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 37 37 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 38 38 H 0.97001 * 119.99679 * 180.02562 * 12 11 9 39 39 H 0.97002 * 120.00011 * 94.99370 * 17 2 1 40 40 H 1.07998 * 119.43848 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.42727 * 179.67458 * 23 22 21 42 42 H 1.07998 * 124.59870 * 179.97438 * 26 25 24 43 43 H 1.08003 * 122.10935 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2805 10 1 5.9388 -0.1795 -0.1885 11 6 5.9524 -1.6691 1.3520 12 7 5.2890 -2.6519 1.9234 13 14 7.6452 -1.1940 1.9832 14 1 8.1764 -0.0669 1.1752 15 1 7.5448 -0.7797 3.4058 16 1 8.5604 -2.3580 1.8701 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0184 2.3571 19 8 1.8582 1.1617 2.4117 20 6 2.6389 -0.7130 3.5602 21 6 2.9672 -2.0603 3.5121 22 7 3.4144 -2.6916 4.5805 23 6 3.5607 -2.0889 5.7420 24 6 3.2534 -0.7392 5.8970 25 16 3.3446 0.3211 7.2973 26 6 2.7512 1.6837 6.3629 27 6 2.5164 1.3273 5.1088 28 6 2.7799 -0.0119 4.7967 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.7722 -2.2741 -2.6701 35 1 3.6263 -0.6886 -3.4658 36 1 5.1507 -1.1477 -2.6703 37 1 3.6646 -2.0585 0.2385 38 1 5.6790 -3.1292 2.6724 39 1 2.2490 -1.6319 1.1525 40 1 2.8601 -2.5999 2.5828 41 1 3.9257 -2.6507 6.5891 42 1 2.5977 2.6773 6.7572 43 1 2.1458 2.0260 4.3732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135268993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:06 Heat of formation + Delta-G solvation = 36.023975 kcal Electronic energy + Delta-G solvation = -27508.424773 eV Core-core repulsion = 23873.597506 eV Total energy + Delta-G solvation = -3634.827268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.32808 -38.79546 -36.79585 -35.88589 -34.19317 -32.50931 -31.51222 -29.99660 -29.87146 -28.53108 -26.37424 -24.26690 -24.07727 -23.68585 -21.37746 -20.75226 -20.17540 -19.84222 -17.96546 -17.25254 -16.91673 -15.98691 -15.70567 -15.44492 -14.82603 -14.60249 -14.09320 -13.89556 -13.78969 -13.70244 -13.68303 -13.28458 -12.92091 -12.71824 -12.26197 -12.16826 -11.95294 -11.79853 -11.79293 -11.69559 -11.64520 -11.05778 -10.87575 -10.78073 -10.72208 -10.40483 -10.26061 -9.94597 -9.76131 -9.63472 -9.45128 -9.01496 -8.91576 -8.72507 -8.42140 -7.55914 -6.97555 -5.85644 -3.08407 0.64852 1.27062 1.67341 2.07492 2.67248 3.40050 3.41632 3.47076 3.49108 3.74612 4.37925 4.55377 4.76183 4.90531 5.04712 5.14208 5.22886 5.38251 5.45474 5.48979 5.52250 5.64778 5.68959 5.77687 5.86568 5.92328 5.97827 6.02610 6.09878 6.17265 6.21351 6.33312 6.37688 6.43235 6.51721 6.55687 6.66582 6.81851 6.95486 7.01583 7.12095 7.66210 8.11084 8.34220 8.37302 8.82515 9.45541 9.96612 10.32283 11.36537 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.005617 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.467321 B = 4983.561285 C = 6558.192711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.223 4.223 10 H 0.068 0.932 11 C -0.009 4.009 12 N -0.920 5.920 13 Si 0.897 3.103 14 H -0.283 1.283 15 H -0.294 1.294 16 H -0.292 1.292 17 N -0.692 5.692 18 C 0.579 3.421 19 O -0.559 6.559 20 C -0.157 4.157 21 C 0.188 3.812 22 N -0.461 5.461 23 C 0.168 3.832 24 C -0.222 4.222 25 S 0.082 5.918 26 C -0.184 4.184 27 C -0.114 4.114 28 C 0.015 3.985 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.376 0.624 38 H 0.260 0.740 39 H 0.403 0.597 40 H 0.170 0.830 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 3.176 3.525 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.103 0.897 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.353 4.353 10 H 0.086 0.914 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.729 3.271 14 H -0.209 1.209 15 H -0.221 1.221 16 H -0.220 1.220 17 N -0.344 5.344 18 C 0.366 3.634 19 O -0.440 6.440 20 C -0.165 4.165 21 C 0.034 3.966 22 N -0.169 5.169 23 C 0.000 4.000 24 C -0.339 4.339 25 S 0.342 5.658 26 C -0.320 4.320 27 C -0.144 4.144 28 C -0.001 4.001 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.211 0.789 38 H 0.070 0.930 39 H 0.241 0.759 40 H 0.187 0.813 41 H 0.172 0.828 42 H 0.185 0.815 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.765 3.040 4.887 10.486 hybrid contribution 0.728 0.652 -0.926 1.347 sum -8.037 3.692 3.960 9.691 Atomic orbital electron populations 1.22209 0.96163 1.01712 1.02000 1.20826 0.92546 0.97759 0.84291 0.89748 1.22221 0.97769 1.00675 0.96614 1.20302 0.89715 0.95925 0.88181 0.93354 1.22410 1.01537 1.00367 0.98002 1.42470 1.18670 1.39847 1.34773 1.19245 0.93054 1.12806 1.10239 0.91444 1.24537 0.98308 0.98794 0.98910 1.69431 1.37562 1.24025 1.25807 0.86256 0.84854 0.77430 0.78553 1.20894 1.22115 1.21972 1.45885 1.65605 1.14291 1.08599 1.17651 0.76794 0.86073 0.82855 1.90629 1.52311 1.15627 1.85422 1.20719 1.07114 0.95625 0.93070 1.22770 0.87502 0.90106 0.96190 1.67745 1.12128 1.38496 0.98543 1.22318 0.93265 0.88554 0.95903 1.23664 1.11801 1.00210 0.98246 1.83863 1.70173 1.00509 1.11222 1.25395 1.06507 1.02626 0.97427 1.20282 1.01658 0.95641 0.96803 1.18208 0.96378 0.93218 0.92298 0.92063 0.92752 0.92358 0.90678 0.91667 0.93558 0.94563 0.92875 0.78923 0.92979 0.75868 0.81283 0.82798 0.81459 0.81931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16 2 C 0.15 2.32 2.57 -67.93 -0.17 2.14 16 3 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.17 3.00 2.89 -67.93 -0.20 2.80 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 8 N -0.71 -15.39 3.84 -53.43 -0.21 -15.60 16 9 C -0.22 -5.63 9.93 -15.06 -0.15 -5.78 16 10 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -23.74 10.79 55.49 0.60 -23.15 16 13 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 N -0.69 -12.09 3.75 -54.90 -0.21 -12.30 16 18 C 0.58 11.50 7.73 -12.55 -0.10 11.40 16 19 O -0.56 -11.90 14.13 5.26 0.07 -11.83 16 20 C -0.16 -3.13 5.94 -104.21 -0.62 -3.75 16 21 C 0.19 3.71 9.01 -17.33 -0.16 3.55 16 22 N -0.46 -8.91 10.32 -12.88 -0.13 -9.04 16 23 C 0.17 2.88 11.20 -17.23 -0.19 2.69 16 24 C -0.22 -3.82 6.52 -38.48 -0.25 -4.07 16 25 S 0.08 1.13 23.29 -107.50 -2.50 -1.38 16 26 C -0.18 -2.56 11.10 28.81 0.32 -2.24 16 27 C -0.11 -1.94 9.43 -40.84 -0.39 -2.33 16 28 C 0.01 0.28 5.88 -106.74 -0.63 -0.35 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.38 8.19 5.70 -40.82 -0.23 7.96 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.40 7.04 4.55 -40.82 -0.19 6.86 16 40 H 0.17 3.35 5.84 -52.49 -0.31 3.04 16 41 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.16 2.87 6.28 -52.48 -0.33 2.54 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -28.39 363.54 -9.60 -37.99 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -5.64 Total: 15.05 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.04 Total: -2.37 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.05 Total: -60.08 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.39 -9.60 -37.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds