Wall clock time and date at job start Tue Mar 31 2020 18:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47038 * 2 1 4 4 C 1.53001 * 109.46947 * 240.00138 * 2 1 3 5 5 C 1.52997 * 109.47049 * 175.00112 * 4 2 1 6 6 H 1.09001 * 109.47289 * 305.00191 * 5 4 2 7 7 C 1.53006 * 109.47127 * 185.00237 * 5 4 2 8 8 N 1.46500 * 109.47473 * 64.99864 * 5 4 2 9 9 C 1.36932 * 120.00140 * 205.00132 * 8 5 4 10 10 H 1.07994 * 120.00447 * 359.97438 * 9 8 5 11 11 C 1.38813 * 119.99838 * 180.02562 * 9 8 5 12 12 N 1.31623 * 120.00145 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46920 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47001 * 120.00056 * 13 11 9 16 16 H 1.48500 * 109.47076 * 239.99780 * 13 11 9 17 17 N 1.46503 * 109.47413 * 120.00380 * 2 1 3 18 18 C 1.34776 * 119.99872 * 275.00321 * 17 2 1 19 19 O 1.21618 * 120.00057 * 359.97438 * 18 17 2 20 20 C 1.47365 * 120.00170 * 180.02562 * 18 17 2 21 21 C 1.38764 * 120.55288 * 359.71556 * 20 18 17 22 22 N 1.31902 * 121.12130 * 179.68100 * 21 20 18 23 23 C 1.31675 * 122.21526 * 0.63611 * 22 21 20 24 24 C 1.39285 * 121.13974 * 359.65952 * 23 22 21 25 25 S 1.75885 * 131.39448 * 180.02562 * 24 23 22 26 26 C 1.75554 * 91.52275 * 179.97438 * 25 24 23 27 27 C 1.32472 * 110.79412 * 0.02562 * 26 25 24 28 28 C 1.40010 * 115.78247 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47551 * 60.00098 * 1 2 3 30 30 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47226 * 299.99876 * 1 2 3 32 32 H 1.08998 * 109.47250 * 54.99993 * 4 2 1 33 33 H 1.08998 * 109.47252 * 294.99917 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 37 37 H 0.97005 * 119.99374 * 25.00210 * 8 5 4 38 38 H 0.97001 * 119.99679 * 180.02562 * 12 11 9 39 39 H 0.97002 * 120.00011 * 94.99370 * 17 2 1 40 40 H 1.07998 * 119.43848 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.42727 * 179.67458 * 23 22 21 42 42 H 1.07998 * 124.59870 * 179.97438 * 26 25 24 43 43 H 1.08003 * 122.10935 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6242 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9856 0.2805 10 1 5.9388 -0.1795 -0.1885 11 6 5.9524 -1.6691 1.3520 12 7 5.2890 -2.6519 1.9234 13 14 7.6452 -1.1940 1.9832 14 1 8.1764 -0.0669 1.1752 15 1 7.5448 -0.7797 3.4058 16 1 8.5604 -2.3580 1.8701 17 7 2.0184 -0.6907 1.1961 18 6 2.1471 -0.0184 2.3571 19 8 1.8582 1.1617 2.4117 20 6 2.6389 -0.7130 3.5602 21 6 2.9672 -2.0603 3.5121 22 7 3.4144 -2.6916 4.5805 23 6 3.5607 -2.0889 5.7420 24 6 3.2534 -0.7392 5.8970 25 16 3.3446 0.3211 7.2973 26 6 2.7512 1.6837 6.3629 27 6 2.5164 1.3273 5.1088 28 6 2.7799 -0.0119 4.7967 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.7722 -2.2741 -2.6701 35 1 3.6263 -0.6886 -3.4658 36 1 5.1507 -1.1477 -2.6703 37 1 3.6646 -2.0585 0.2385 38 1 5.6790 -3.1292 2.6724 39 1 2.2490 -1.6319 1.1525 40 1 2.8601 -2.5999 2.5828 41 1 3.9257 -2.6507 6.5891 42 1 2.5977 2.6773 6.7572 43 1 2.1458 2.0260 4.3732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135268993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:05 Heat of formation + Delta-G solvation = 19.835885 kcal Electronic energy + Delta-G solvation = -27509.126742 eV Core-core repulsion = 23873.597506 eV Total energy + Delta-G solvation = -3635.529236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72258 -40.19818 -38.27425 -37.20901 -35.75126 -34.14314 -33.02551 -31.41214 -31.19608 -30.11701 -27.58855 -25.67680 -25.55871 -25.34193 -22.71057 -22.09631 -21.54786 -21.27815 -19.28282 -19.09368 -18.33282 -17.33832 -17.05837 -16.84275 -16.53511 -16.06206 -15.56745 -15.51892 -15.24551 -15.06899 -14.98386 -14.75486 -14.30573 -14.14813 -13.57949 -13.57646 -13.31811 -13.20849 -13.13055 -12.96963 -12.93236 -12.79513 -12.61099 -12.28793 -12.14839 -11.94044 -11.70447 -11.60647 -11.40049 -11.11302 -10.92967 -10.77164 -10.37989 -10.03796 -9.83955 -8.87352 -8.69328 -7.83656 -5.03612 -0.68555 -0.10848 0.46106 0.84856 1.35562 1.38461 1.44111 1.46953 1.94391 2.37645 2.57976 2.93950 3.43544 3.51311 3.64892 3.79659 3.80408 3.90426 4.04355 4.18634 4.20954 4.35257 4.41284 4.45895 4.58484 4.67799 4.71193 4.85095 4.87298 4.89114 4.94664 5.09444 5.12803 5.15214 5.17001 5.33992 5.38623 5.43790 5.54679 5.62270 5.64959 5.76874 6.38124 6.65829 6.96393 7.34808 7.47554 8.18253 8.45469 9.35456 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.005617 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.467321 B = 4983.561285 C = 6558.192711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.059 0.941 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.029 0.971 7 C -0.153 4.153 8 N -0.718 5.718 9 C -0.223 4.223 10 H 0.053 0.947 11 C -0.045 4.045 12 N -0.921 5.921 13 Si 0.930 3.070 14 H -0.284 1.284 15 H -0.310 1.310 16 H -0.296 1.296 17 N -0.686 5.686 18 C 0.571 3.429 19 O -0.583 6.583 20 C -0.184 4.184 21 C 0.186 3.814 22 N -0.486 5.486 23 C 0.171 3.829 24 C -0.246 4.246 25 S 0.157 5.843 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.005 4.005 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.402 0.598 40 H 0.161 0.839 41 H 0.189 0.811 42 H 0.208 0.792 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 3.609 4.209 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.078 0.922 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.047 0.953 7 C -0.213 4.213 8 N -0.361 5.361 9 C -0.356 4.356 10 H 0.071 0.929 11 C -0.240 4.240 12 N -0.571 5.571 13 Si 0.764 3.236 14 H -0.209 1.209 15 H -0.238 1.238 16 H -0.223 1.223 17 N -0.336 5.336 18 C 0.359 3.641 19 O -0.465 6.465 20 C -0.191 4.191 21 C 0.033 3.967 22 N -0.195 5.195 23 C 0.003 3.997 24 C -0.364 4.364 25 S 0.418 5.582 26 C -0.295 4.295 27 C -0.182 4.182 28 C -0.022 4.022 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.209 0.791 38 H 0.059 0.941 39 H 0.241 0.759 40 H 0.178 0.822 41 H 0.206 0.794 42 H 0.225 0.775 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.849 3.471 5.543 11.823 hybrid contribution 1.036 0.628 -0.984 1.561 sum -8.814 4.099 4.559 10.736 Atomic orbital electron populations 1.22109 0.93706 1.02755 1.02412 1.20996 0.94405 0.96370 0.84016 0.92242 1.22142 0.94799 1.01636 0.97264 1.20502 0.92165 0.94419 0.87594 0.95302 1.22263 1.00014 1.00854 0.98163 1.42489 1.17618 1.40085 1.35872 1.19230 0.94366 1.12025 1.09969 0.92907 1.24873 0.99643 0.99666 0.99786 1.69512 1.37489 1.24365 1.25695 0.85722 0.83788 0.76919 0.77163 1.20907 1.23839 1.22334 1.45949 1.64843 1.14164 1.08690 1.17836 0.76728 0.85937 0.83586 1.90597 1.53603 1.16446 1.85897 1.20859 1.08436 0.95964 0.93860 1.22610 0.87720 0.90056 0.96269 1.67731 1.13301 1.39195 0.99262 1.22896 0.91759 0.89011 0.96057 1.24034 1.11675 1.00831 0.99832 1.83622 1.68171 0.98260 1.08113 1.25944 1.02745 1.04511 0.96251 1.20192 1.04875 0.94976 0.98137 1.18550 0.96669 0.94379 0.92569 0.89347 0.91338 0.94233 0.87096 0.90431 0.93268 0.91264 0.95359 0.79129 0.94070 0.75915 0.82233 0.79418 0.77531 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 2 C 0.15 4.44 2.57 44.99 0.12 4.55 16 3 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 4 C -0.12 -3.17 4.43 30.59 0.14 -3.04 16 5 C 0.16 5.66 2.89 44.99 0.13 5.79 16 6 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 7 C -0.15 -4.82 9.49 71.98 0.68 -4.14 16 8 N -0.72 -31.36 3.84 -322.94 -1.24 -32.60 16 9 C -0.22 -11.59 9.93 84.03 0.83 -10.75 16 10 H 0.05 2.85 7.83 -2.91 -0.02 2.83 16 11 C -0.04 -2.39 5.50 84.86 0.47 -1.92 16 12 N -0.92 -48.66 10.79 21.65 0.23 -48.43 16 13 Si 0.93 46.43 29.55 68.60 2.03 48.46 16 14 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.31 -16.14 7.11 99.48 0.71 -15.44 16 16 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 17 N -0.69 -24.59 3.75 -445.85 -1.67 -26.26 16 18 C 0.57 23.68 7.73 86.65 0.67 24.35 16 19 O -0.58 -25.94 14.13 -4.09 -0.06 -26.00 16 20 C -0.18 -7.60 5.94 -19.60 -0.12 -7.72 16 21 C 0.19 7.62 9.01 84.81 0.76 8.38 16 22 N -0.49 -19.06 10.32 -194.65 -2.01 -21.07 16 23 C 0.17 5.72 11.20 84.97 0.95 6.68 16 24 C -0.25 -8.24 6.52 22.98 0.15 -8.09 16 25 S 0.16 3.82 23.29 -56.49 -1.32 2.51 16 26 C -0.16 -4.00 11.10 66.69 0.74 -3.26 16 27 C -0.15 -5.15 9.43 21.57 0.20 -4.95 16 28 C -0.01 -0.20 5.88 -21.24 -0.12 -0.32 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.37 16.56 5.70 -92.70 -0.53 16.03 16 38 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.40 14.47 4.55 -92.71 -0.42 14.05 16 40 H 0.16 6.64 5.84 -2.91 -0.02 6.63 16 41 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.21 3.45 8.06 -2.91 -0.02 3.42 16 43 H 0.15 5.41 6.28 -2.91 -0.02 5.39 16 Total: -1.00 -64.42 363.54 2.35 -62.07 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.10 Total: 38.75 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 6.29 Total: 2.57 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -4.69 Total: -128.36 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.06 Total: -26.00 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.32 Total: 2.51 kcal Total: -64.42 2.35 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135268993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.903 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds