Wall clock time and date at job start Tue Mar 31 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21581 * 120.00382 * 0.02562 * 9 8 5 11 11 C 1.47666 * 119.99770 * 180.02562 * 9 8 5 12 12 C 1.40156 * 119.85772 * 359.72253 * 11 9 8 13 13 C 1.36219 * 120.07984 * 179.70183 * 12 11 9 14 14 C 1.39576 * 120.43376 * 0.57309 * 13 12 11 15 15 S 1.76147 * 131.53558 * 179.72061 * 14 13 12 16 16 C 1.70623 * 90.85787 * 179.97438 * 15 14 13 17 17 N 1.27852 * 111.58876 * 0.02562 * 16 15 14 18 18 C 1.34745 * 117.84091 * 359.97438 * 17 16 15 19 19 C 1.38720 * 119.85354 * 180.02562 * 11 9 8 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 35 35 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08008 * 119.95767 * 359.97438 * 12 11 9 39 39 H 1.07997 * 119.77737 * 180.27571 * 13 12 11 40 40 H 1.08005 * 124.20892 * 179.97438 * 16 15 14 41 41 H 1.07999 * 119.97964 * 359.97438 * 19 11 9 42 42 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9378 0.4322 -0.5726 11 6 5.5471 2.6277 -1.2662 12 6 4.6516 3.5247 -1.8644 13 6 5.0006 4.8314 -2.0268 14 6 6.2534 5.2855 -1.6116 15 16 7.0006 6.8790 -1.6827 16 6 8.4158 6.2766 -0.9440 17 7 8.3165 5.0286 -0.6850 18 6 7.1681 4.4065 -1.0164 19 6 6.7967 3.0609 -0.8480 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1716 -1.3615 -2.5380 35 1 3.8002 -2.4818 -2.3594 36 1 3.6547 -1.0591 -3.4193 37 1 3.3284 1.4130 -1.9027 38 1 3.6820 3.1805 -2.1929 39 1 4.3051 5.5194 -2.4843 40 1 9.2874 6.8750 -0.7233 41 1 7.4845 2.3643 -0.3917 42 1 2.2490 -1.6318 1.1526 43 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135825739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:57 Heat of formation + Delta-G solvation = 29.151679 kcal Electronic energy + Delta-G solvation = -25970.670256 eV Core-core repulsion = 22335.544983 eV Total energy + Delta-G solvation = -3635.125273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82520 -39.55190 -37.24902 -36.59828 -34.66928 -32.42509 -31.57976 -31.02939 -29.70343 -28.29903 -26.40998 -25.47542 -24.21983 -23.37692 -22.40069 -21.22775 -20.27429 -19.91042 -18.99366 -17.51874 -17.20314 -16.59303 -16.47805 -15.61901 -15.18847 -14.93251 -14.68438 -14.32932 -14.28160 -14.13050 -13.84006 -13.54466 -13.31597 -13.16664 -13.05855 -12.34748 -12.22533 -12.14124 -11.99720 -11.70846 -11.70514 -11.32211 -11.04453 -10.70590 -10.49448 -10.44743 -10.38417 -10.10339 -9.98860 -9.95286 -9.76844 -9.11278 -9.08968 -8.85585 -8.80197 -8.42301 -6.96187 -6.02063 -3.01639 0.08260 0.55671 0.90283 1.36022 1.96963 2.87502 3.18185 3.55943 3.62065 3.70003 3.74258 3.76094 4.26265 4.62737 4.65002 4.73433 4.83214 4.93274 5.02665 5.15880 5.32594 5.37672 5.58163 5.60271 5.67292 5.77355 5.77860 5.80765 5.86810 5.92032 5.97075 6.04042 6.20164 6.25231 6.29233 6.36234 6.46295 6.59129 6.72247 6.84167 7.00148 7.24980 7.67353 7.87296 8.40580 8.83406 9.30132 10.16223 10.30577 11.46501 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003410 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.924186 B = 8209.649161 C = 9419.425171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.560 3.440 10 O -0.524 6.524 11 C -0.113 4.113 12 C -0.069 4.069 13 C -0.078 4.078 14 C -0.164 4.164 15 S 0.097 5.903 16 C 0.065 3.935 17 N -0.455 5.455 18 C 0.069 3.931 19 C 0.004 3.996 20 N -0.731 5.731 21 C -0.326 4.326 22 H 0.061 0.939 23 C -0.043 4.043 24 N -0.944 5.944 25 Si 1.078 2.922 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.288 1.288 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.206 0.794 41 H 0.152 0.848 42 H 0.366 0.634 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 16.303 -17.621 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.041 3.959 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.345 3.655 10 O -0.400 6.400 11 C -0.119 4.119 12 C -0.091 4.091 13 C -0.100 4.100 14 C -0.283 4.283 15 S 0.350 5.650 16 C -0.241 4.241 17 N -0.167 5.167 18 C -0.050 4.050 19 C -0.018 4.018 20 N -0.374 5.374 21 C -0.457 4.457 22 H 0.079 0.921 23 C -0.241 4.241 24 N -0.589 5.589 25 Si 0.909 3.091 26 H -0.224 1.224 27 H -0.223 1.223 28 H -0.214 1.214 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.222 0.778 41 H 0.169 0.831 42 H 0.199 0.801 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.402 16.556 -15.677 23.432 hybrid contribution -0.905 -0.499 -1.594 1.900 sum 4.497 16.057 -17.272 24.008 Atomic orbital electron populations 1.22444 0.99460 1.00747 0.99875 1.20156 0.91559 0.95519 0.86080 0.93533 1.22203 0.93691 1.02258 0.98997 1.21049 0.95102 0.79875 0.99913 0.87828 1.22190 1.01680 1.00154 0.97954 1.45840 1.16063 1.11790 1.62322 1.17922 0.82378 0.86756 0.78408 1.90829 1.51067 1.55721 1.42392 1.19838 0.94947 0.94604 1.02525 1.20994 0.99040 0.92471 0.96598 1.19948 0.93479 0.96005 1.00614 1.24065 1.00713 0.96948 1.06560 1.83982 1.10968 1.08707 1.61302 1.28118 1.02537 0.93638 0.99805 1.66201 1.22684 1.08769 1.19059 1.19089 0.88828 0.95327 1.01766 1.20803 0.95185 0.91994 0.93820 1.42401 1.79133 1.09664 1.06250 1.19972 1.41738 0.94887 0.89123 0.92089 1.25652 0.99450 0.97486 1.01479 1.70841 1.51486 1.08212 1.28397 0.83265 0.75825 0.74186 0.75801 1.22369 1.22301 1.21418 0.93651 0.92833 0.94606 0.90624 0.91847 0.92362 0.91660 0.92982 0.77164 0.84283 0.84519 0.77793 0.83073 0.80115 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.18 3.31 2.84 -67.93 -0.19 3.12 16 3 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 4 C -0.13 -1.95 4.29 -26.73 -0.11 -2.07 16 5 C 0.14 2.28 2.52 -67.93 -0.17 2.11 16 6 H 0.10 2.17 7.05 -51.93 -0.37 1.80 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.79 16 8 N -0.71 -10.15 4.40 -54.80 -0.24 -10.39 16 9 C 0.56 9.37 7.73 -12.41 -0.10 9.28 16 10 O -0.52 -11.09 15.96 5.29 0.08 -11.00 16 11 C -0.11 -1.57 5.86 -105.15 -0.62 -2.19 16 12 C -0.07 -0.72 9.47 -39.59 -0.37 -1.09 16 13 C -0.08 -0.75 9.99 -39.81 -0.40 -1.15 16 14 C -0.16 -1.83 6.56 -38.37 -0.25 -2.08 16 15 S 0.10 0.79 23.17 -107.50 -2.49 -1.70 16 16 C 0.06 0.57 12.09 51.11 0.62 1.19 16 17 N -0.46 -5.85 10.57 -13.02 -0.14 -5.99 16 18 C 0.07 0.94 6.99 -84.99 -0.59 0.34 16 19 C 0.00 0.05 9.65 -38.51 -0.37 -0.32 16 20 N -0.73 -17.86 4.49 -53.43 -0.24 -18.10 16 21 C -0.33 -9.20 9.93 -15.06 -0.15 -9.35 16 22 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 23 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 24 N -0.94 -29.79 13.70 55.49 0.76 -29.03 16 25 Si 1.08 27.02 29.92 -169.99 -5.09 21.94 16 26 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.30 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.39 4.30 6.60 -40.82 -0.27 4.03 16 38 H 0.14 1.04 6.37 -52.48 -0.33 0.71 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.21 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.15 2.37 7.60 -52.49 -0.40 1.97 16 42 H 0.37 9.34 6.63 -40.82 -0.27 9.07 16 43 H 0.25 7.89 6.77 -40.82 -0.28 7.62 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -36.26 373.59 -9.57 -45.82 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.74 Total: 10.70 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.10 Total: -7.88 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.14 Total: -63.50 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 27.02 SS G_CDS: -5.09 Total: 21.94 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.26 -9.57 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.976 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds