Wall clock time and date at job start Tue Mar 31 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21581 * 120.00382 * 0.02562 * 9 8 5 11 11 C 1.47666 * 119.99770 * 180.02562 * 9 8 5 12 12 C 1.40156 * 119.85772 * 359.72253 * 11 9 8 13 13 C 1.36219 * 120.07984 * 179.70183 * 12 11 9 14 14 C 1.39576 * 120.43376 * 0.57309 * 13 12 11 15 15 S 1.76147 * 131.53558 * 179.72061 * 14 13 12 16 16 C 1.70623 * 90.85787 * 179.97438 * 15 14 13 17 17 N 1.27852 * 111.58876 * 0.02562 * 16 15 14 18 18 C 1.34745 * 117.84091 * 359.97438 * 17 16 15 19 19 C 1.38720 * 119.85354 * 180.02562 * 11 9 8 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 35 35 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08008 * 119.95767 * 359.97438 * 12 11 9 39 39 H 1.07997 * 119.77737 * 180.27571 * 13 12 11 40 40 H 1.08005 * 124.20892 * 179.97438 * 16 15 14 41 41 H 1.07999 * 119.97964 * 359.97438 * 19 11 9 42 42 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9378 0.4322 -0.5726 11 6 5.5471 2.6277 -1.2662 12 6 4.6516 3.5247 -1.8644 13 6 5.0006 4.8314 -2.0268 14 6 6.2534 5.2855 -1.6116 15 16 7.0006 6.8790 -1.6827 16 6 8.4158 6.2766 -0.9440 17 7 8.3165 5.0286 -0.6850 18 6 7.1681 4.4065 -1.0164 19 6 6.7967 3.0609 -0.8480 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1716 -1.3615 -2.5380 35 1 3.8002 -2.4818 -2.3594 36 1 3.6547 -1.0591 -3.4193 37 1 3.3284 1.4130 -1.9027 38 1 3.6820 3.1805 -2.1929 39 1 4.3051 5.5194 -2.4843 40 1 9.2874 6.8750 -0.7233 41 1 7.4845 2.3643 -0.3917 42 1 2.2490 -1.6318 1.1526 43 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135825739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:57 Heat of formation + Delta-G solvation = 3.463278 kcal Electronic energy + Delta-G solvation = -25971.784189 eV Core-core repulsion = 22335.544983 eV Total energy + Delta-G solvation = -3636.239206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79247 -40.72346 -38.57147 -37.69725 -36.31923 -34.22321 -32.73020 -32.07981 -30.71583 -30.13805 -27.66920 -26.31005 -25.59452 -25.15539 -23.29735 -22.47097 -21.52086 -21.35114 -19.86846 -19.45055 -18.36601 -17.65696 -17.39922 -16.73889 -16.68850 -16.25215 -15.97070 -15.75829 -15.49886 -15.37751 -15.04818 -14.87346 -14.61640 -14.45651 -14.21016 -13.57705 -13.47530 -13.17966 -13.11340 -12.96714 -12.91986 -12.80384 -12.52746 -12.20938 -12.16865 -11.91096 -11.87103 -11.57409 -11.25921 -11.19172 -11.12179 -10.91706 -10.74468 -10.16250 -9.89226 -9.21192 -9.04846 -8.34835 -5.26115 -0.72574 -0.42718 0.18193 0.60309 1.16773 1.51271 1.62756 1.75355 1.76347 2.03873 2.64605 2.69987 2.97364 3.42928 3.44109 3.59613 3.72532 3.86982 3.89127 4.02419 4.06719 4.10258 4.30814 4.42933 4.47040 4.59814 4.63222 4.72633 4.76680 4.85419 4.91879 4.93415 4.97437 5.03424 5.05966 5.17078 5.27245 5.34340 5.41344 5.53540 5.56272 5.64845 6.47220 6.51475 6.53946 7.16047 7.19664 8.06927 8.17354 9.17814 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003410 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.924186 B = 8209.649161 C = 9419.425171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.042 0.958 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.552 3.448 10 O -0.585 6.585 11 C -0.124 4.124 12 C -0.067 4.067 13 C -0.063 4.063 14 C -0.184 4.184 15 S 0.172 5.828 16 C 0.069 3.931 17 N -0.506 5.506 18 C 0.050 3.950 19 C -0.029 4.029 20 N -0.744 5.744 21 C -0.313 4.313 22 H 0.061 0.939 23 C -0.109 4.109 24 N -0.980 5.980 25 Si 1.119 2.881 26 H -0.297 1.297 27 H -0.269 1.269 28 H -0.291 1.291 29 H 0.040 0.960 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.414 0.586 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.243 0.757 41 H 0.118 0.882 42 H 0.356 0.644 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 20.088 -20.441 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.340 3.660 10 O -0.466 6.466 11 C -0.130 4.130 12 C -0.089 4.089 13 C -0.085 4.085 14 C -0.304 4.304 15 S 0.426 5.574 16 C -0.235 4.235 17 N -0.220 5.220 18 C -0.069 4.069 19 C -0.051 4.051 20 N -0.387 5.387 21 C -0.445 4.445 22 H 0.079 0.921 23 C -0.300 4.300 24 N -0.630 5.630 25 Si 0.946 3.054 26 H -0.225 1.225 27 H -0.194 1.194 28 H -0.218 1.218 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.191 0.809 39 H 0.197 0.803 40 H 0.259 0.741 41 H 0.136 0.864 42 H 0.187 0.813 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.160 20.413 -18.574 27.779 hybrid contribution -0.191 -1.482 -0.832 1.710 sum 2.970 18.931 -19.406 27.273 Atomic orbital electron populations 1.22291 0.97535 1.00829 1.00851 1.20493 0.92702 0.95243 0.85619 0.93867 1.22114 0.92401 1.02416 0.98737 1.20883 0.95832 0.80780 0.98387 0.93944 1.22093 1.00376 1.00291 0.98220 1.45683 1.15601 1.11730 1.61421 1.18484 0.82389 0.87719 0.77418 1.90792 1.52944 1.57588 1.45277 1.19692 0.95616 0.93498 1.04241 1.21285 0.99477 0.92329 0.95805 1.20439 0.93229 0.96101 0.98780 1.24530 1.01121 0.98695 1.06005 1.83716 1.08842 1.05356 1.59461 1.28860 1.04190 0.92818 0.97679 1.66227 1.23376 1.10706 1.21652 1.19117 0.90045 0.95121 1.02639 1.20671 0.95667 0.92839 0.95883 1.42635 1.79459 1.09371 1.07186 1.20279 1.38966 0.94878 0.90377 0.92096 1.26924 1.00381 0.97702 1.05015 1.70943 1.54565 1.09471 1.27978 0.82725 0.76270 0.73859 0.72579 1.22526 1.19390 1.21776 0.94036 0.95430 0.89982 0.90430 0.86801 0.94536 0.91029 0.89396 0.74754 0.80895 0.80325 0.74127 0.86403 0.81262 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 9.49 71.98 0.68 -4.28 16 2 C 0.17 6.02 2.84 44.99 0.13 6.15 16 3 H 0.04 1.59 7.56 -2.38 -0.02 1.57 16 4 C -0.12 -3.20 4.29 30.60 0.13 -3.07 16 5 C 0.15 4.60 2.52 45.00 0.11 4.72 16 6 H 0.04 1.90 7.05 -2.39 -0.02 1.88 16 7 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 8 N -0.69 -19.47 4.40 -445.56 -1.96 -21.43 16 9 C 0.55 19.56 7.73 86.73 0.67 20.23 16 10 O -0.59 -27.38 15.96 -3.97 -0.06 -27.45 16 11 C -0.12 -3.59 5.86 -20.21 -0.12 -3.71 16 12 C -0.07 -1.24 9.47 22.27 0.21 -1.03 16 13 C -0.06 -1.00 9.99 22.12 0.22 -0.78 16 14 C -0.18 -3.73 6.56 23.05 0.15 -3.57 16 15 S 0.17 2.21 23.17 -56.49 -1.31 0.90 16 16 C 0.07 1.08 12.09 130.82 1.58 2.66 16 17 N -0.51 -13.13 10.57 -194.90 -2.06 -15.19 16 18 C 0.05 1.39 6.99 39.73 0.28 1.67 16 19 C -0.03 -0.93 9.65 22.96 0.22 -0.70 16 20 N -0.74 -37.14 4.49 -322.94 -1.45 -38.59 16 21 C -0.31 -18.01 9.93 84.03 0.83 -17.18 16 22 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 23 C -0.11 -6.65 5.50 84.86 0.47 -6.19 16 24 N -0.98 -64.51 13.70 21.65 0.30 -64.21 16 25 Si 1.12 55.70 29.92 68.60 2.05 57.75 16 26 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 29 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 7.86 6.60 -92.71 -0.61 7.25 16 38 H 0.17 1.85 6.37 -2.91 -0.02 1.83 16 39 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.24 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.12 4.39 7.60 -2.91 -0.02 4.36 16 42 H 0.36 18.99 6.63 -92.71 -0.61 18.37 16 43 H 0.24 15.93 6.77 -92.71 -0.63 15.30 16 Total: -1.00 -87.93 373.59 1.73 -86.20 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.03 Total: 30.34 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 6.26 Total: -8.32 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -5.17 Total: -139.43 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 55.70 SS G_CDS: 2.05 Total: 57.75 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.31 Total: 0.90 kcal Total: -87.93 1.73 -86.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.664 kcal (2) G-P(sol) polarization free energy of solvation -87.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds