Wall clock time and date at job start Tue Mar 31 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.52998 * 109.47003 * 240.00073 * 2 1 3 5 5 C 1.53005 * 109.46959 * 175.00174 * 4 2 1 6 6 H 1.08998 * 109.46933 * 304.99772 * 5 4 2 7 7 C 1.53004 * 109.46908 * 184.99904 * 5 4 2 8 8 N 1.46502 * 109.47257 * 65.00016 * 5 4 2 9 9 C 1.34778 * 119.99975 * 204.99629 * 8 5 4 10 10 O 1.21575 * 119.99797 * 0.02562 * 9 8 5 11 11 C 1.47653 * 119.99889 * 179.97438 * 9 8 5 12 12 C 1.40163 * 119.85630 * 0.02562 * 11 9 8 13 13 C 1.36221 * 120.07578 * 180.02562 * 12 11 9 14 14 C 1.39573 * 120.43825 * 359.97438 * 13 12 11 15 15 S 1.76143 * 131.53580 * 180.02562 * 14 13 12 16 16 C 1.70628 * 90.85965 * 179.97438 * 15 14 13 17 17 N 1.27845 * 111.58426 * 359.75798 * 16 15 14 18 18 C 1.34744 * 117.84376 * 0.45024 * 17 16 15 19 19 C 1.38715 * 119.85682 * 180.02562 * 11 9 8 20 20 N 1.46503 * 109.46991 * 120.00163 * 2 1 3 21 21 C 1.36938 * 119.99932 * 274.99459 * 20 2 1 22 22 H 1.07999 * 120.00230 * 0.02562 * 21 20 2 23 23 C 1.38816 * 120.00151 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99522 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00086 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47474 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47059 * 120.00259 * 25 23 21 28 28 H 1.48502 * 109.47403 * 239.99790 * 25 23 21 29 29 H 1.08997 * 109.47110 * 300.00081 * 1 2 3 30 30 H 1.09001 * 109.46693 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47362 * 55.00034 * 4 2 1 33 33 H 1.09004 * 109.47415 * 294.99863 * 4 2 1 34 34 H 1.08998 * 109.47216 * 299.99695 * 7 5 4 35 35 H 1.08996 * 109.47180 * 60.00138 * 7 5 4 36 36 H 1.08998 * 109.46940 * 179.97438 * 7 5 4 37 37 H 0.97004 * 119.99868 * 24.99999 * 8 5 4 38 38 H 1.07994 * 119.96223 * 0.02562 * 12 11 9 39 39 H 1.08001 * 119.77782 * 180.02562 * 13 12 11 40 40 H 1.08006 * 124.20542 * 179.97438 * 16 15 14 41 41 H 1.08007 * 119.97481 * 359.97438 * 19 11 9 42 42 H 0.97000 * 120.00277 * 95.00001 * 20 2 1 43 43 H 0.97004 * 120.00047 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1824 9 6 5.3748 -0.9912 0.2733 10 8 5.9874 -0.0831 -0.2541 11 6 5.9680 -1.7174 1.4138 12 6 5.2588 -2.7635 2.0200 13 6 5.8016 -3.4362 3.0728 14 6 7.0649 -3.0920 3.5562 15 16 8.0305 -3.7507 4.8740 16 6 9.2794 -2.6337 4.5514 17 7 8.9870 -1.8729 3.5665 18 6 7.7936 -2.0504 2.9666 19 6 7.2248 -1.3616 1.8808 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8920 1.0403 2.4244 23 6 2.6123 -0.6618 3.5091 24 7 2.9262 -1.9386 3.4497 25 14 2.7902 0.2699 5.1182 26 1 2.3742 1.6818 4.9214 27 1 1.9300 -0.3595 6.1523 28 1 4.2071 0.2279 5.5607 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.7722 -2.2741 -2.6699 35 1 3.6264 -0.6887 -3.4657 36 1 5.1507 -1.1477 -2.6701 37 1 3.6647 -2.0585 0.2386 38 1 4.2809 -3.0364 1.6519 39 1 5.2511 -4.2416 3.5360 40 1 10.2035 -2.5788 5.1077 41 1 7.7670 -0.5550 1.4097 42 1 2.2490 -1.6318 1.1526 43 1 3.2495 -2.3959 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135825745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:01 Heat of formation + Delta-G solvation = 35.550995 kcal Electronic energy + Delta-G solvation = -27183.572501 eV Core-core repulsion = 23548.724723 eV Total energy + Delta-G solvation = -3634.847778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.23302 -39.16985 -36.98578 -36.12654 -34.23475 -32.39072 -31.14898 -30.49469 -29.35018 -28.49849 -26.37764 -24.86848 -23.75792 -23.65584 -21.77659 -20.86705 -20.28607 -19.53330 -18.35927 -17.26818 -16.81580 -16.18197 -15.81803 -15.32621 -14.84447 -14.64321 -14.24912 -14.15397 -13.84957 -13.65629 -13.50691 -13.36222 -12.98862 -12.76073 -12.68646 -12.18852 -11.96048 -11.80931 -11.70180 -11.54216 -11.40680 -11.03742 -10.88778 -10.78980 -10.71287 -10.40652 -10.27364 -9.95478 -9.82089 -9.75128 -9.50510 -9.36213 -9.04247 -8.47262 -8.32936 -7.78794 -7.00045 -5.90541 -3.11419 0.73487 1.18319 1.46578 1.91019 2.65703 3.37950 3.38858 3.46120 3.48395 3.67059 4.26310 4.31977 4.53650 4.92833 5.03819 5.21502 5.37133 5.40895 5.46520 5.49634 5.55524 5.62865 5.65516 5.82021 5.89116 5.93156 5.97688 6.09690 6.18343 6.20208 6.33628 6.37193 6.41044 6.51700 6.55055 6.67680 6.75981 6.80825 6.98101 7.01907 7.13235 7.64189 7.77089 8.12982 8.30528 8.83025 9.42762 9.94503 10.30534 11.31915 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.004993 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.208311 B = 5605.978549 C = 7192.573016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.084 0.916 7 C -0.163 4.163 8 N -0.691 5.691 9 C 0.574 3.426 10 O -0.558 6.558 11 C -0.119 4.119 12 C 0.001 3.999 13 C -0.079 4.079 14 C -0.149 4.149 15 S 0.071 5.929 16 C 0.049 3.951 17 N -0.454 5.454 18 C 0.045 3.955 19 C -0.004 4.004 20 N -0.716 5.716 21 C -0.219 4.219 22 H 0.068 0.932 23 C -0.009 4.009 24 N -0.926 5.926 25 Si 0.897 3.103 26 H -0.283 1.283 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.403 0.597 38 H 0.149 0.851 39 H 0.131 0.869 40 H 0.198 0.802 41 H 0.141 0.859 42 H 0.376 0.624 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -6.060 -4.728 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.344 5.344 9 C 0.361 3.639 10 O -0.439 6.439 11 C -0.124 4.124 12 C -0.023 4.023 13 C -0.102 4.102 14 C -0.268 4.268 15 S 0.323 5.677 16 C -0.257 4.257 17 N -0.166 5.166 18 C -0.073 4.073 19 C -0.026 4.026 20 N -0.358 5.358 21 C -0.350 4.350 22 H 0.086 0.914 23 C -0.204 4.204 24 N -0.574 5.574 25 Si 0.729 3.271 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.166 0.834 39 H 0.149 0.851 40 H 0.215 0.785 41 H 0.158 0.842 42 H 0.211 0.789 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.445 -5.620 -4.388 8.971 hybrid contribution -0.454 0.473 0.899 1.113 sum 4.990 -5.147 -3.489 7.973 Atomic orbital electron populations 1.22408 0.99192 1.00737 0.99979 1.20305 0.91726 0.95813 0.86315 0.93311 1.22218 0.93936 1.01641 0.99451 1.20834 0.92491 0.97385 0.84819 0.89749 1.22211 1.01881 1.00834 0.97185 1.45867 1.17484 1.37481 1.33533 1.17862 0.81340 0.82599 0.82079 1.90701 1.62336 1.30957 1.59866 1.19709 0.94947 0.98979 0.98812 1.21015 0.97255 0.91232 0.92752 1.19863 0.91568 1.01645 0.97126 1.23971 1.01118 1.01297 1.00436 1.83811 1.12116 1.38416 1.33318 1.27856 1.03693 0.96068 0.98086 1.66114 1.16940 1.25162 1.08362 1.18926 0.90191 0.98167 0.99983 1.20603 0.93475 0.96746 0.91734 1.42470 1.77810 1.10061 1.05483 1.19265 1.34803 0.93826 0.87123 0.91418 1.24473 1.02407 0.96047 0.97491 1.69494 1.51086 1.08320 1.28543 0.86243 0.77313 0.78996 0.84499 1.20851 1.22054 1.22009 0.92874 0.94537 0.93587 0.90685 0.91705 0.92759 0.92072 0.92311 0.75767 0.83353 0.85105 0.78493 0.84173 0.78897 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.17 2.95 2.89 -67.93 -0.20 2.76 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.15 2.30 2.57 -67.92 -0.17 2.12 16 6 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 7 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 8 N -0.69 -11.90 3.75 -54.81 -0.21 -12.11 16 9 C 0.57 11.35 7.73 -12.42 -0.10 11.25 16 10 O -0.56 -12.34 15.96 5.30 0.08 -12.25 16 11 C -0.12 -2.29 5.86 -105.15 -0.62 -2.90 16 12 C 0.00 0.01 7.75 -39.58 -0.31 -0.29 16 13 C -0.08 -1.36 9.99 -39.81 -0.40 -1.76 16 14 C -0.15 -2.59 6.56 -38.38 -0.25 -2.84 16 15 S 0.07 0.97 23.17 -107.50 -2.49 -1.52 16 16 C 0.05 0.66 12.09 51.10 0.62 1.28 16 17 N -0.45 -7.82 10.57 -13.03 -0.14 -7.96 16 18 C 0.05 0.85 6.99 -84.98 -0.59 0.25 16 19 C 0.00 -0.07 9.65 -38.51 -0.37 -0.44 16 20 N -0.72 -15.10 3.84 -53.43 -0.21 -15.30 16 21 C -0.22 -5.45 9.93 -15.06 -0.15 -5.60 16 22 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -22.71 10.70 55.49 0.59 -22.11 16 25 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 6.81 4.51 -40.82 -0.18 6.63 16 38 H 0.15 2.64 5.82 -52.49 -0.31 2.34 16 39 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.14 2.71 7.60 -52.48 -0.40 2.31 16 42 H 0.38 7.95 5.70 -40.82 -0.23 7.72 16 43 H 0.25 6.29 8.31 -40.82 -0.34 5.95 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -28.65 366.45 -9.62 -38.27 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.71 Total: 13.23 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.05 Total: -2.52 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.05 Total: -57.48 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.65 -9.62 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds