Wall clock time and date at job start Tue Mar 31 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.52998 * 109.47003 * 240.00073 * 2 1 3 5 5 C 1.53005 * 109.46959 * 175.00174 * 4 2 1 6 6 H 1.08998 * 109.46933 * 304.99772 * 5 4 2 7 7 C 1.53004 * 109.46908 * 184.99904 * 5 4 2 8 8 N 1.46502 * 109.47257 * 65.00016 * 5 4 2 9 9 C 1.34778 * 119.99975 * 204.99629 * 8 5 4 10 10 O 1.21575 * 119.99797 * 0.02562 * 9 8 5 11 11 C 1.47653 * 119.99889 * 179.97438 * 9 8 5 12 12 C 1.40163 * 119.85630 * 0.02562 * 11 9 8 13 13 C 1.36221 * 120.07578 * 180.02562 * 12 11 9 14 14 C 1.39573 * 120.43825 * 359.97438 * 13 12 11 15 15 S 1.76143 * 131.53580 * 180.02562 * 14 13 12 16 16 C 1.70628 * 90.85965 * 179.97438 * 15 14 13 17 17 N 1.27845 * 111.58426 * 359.75798 * 16 15 14 18 18 C 1.34744 * 117.84376 * 0.45024 * 17 16 15 19 19 C 1.38715 * 119.85682 * 180.02562 * 11 9 8 20 20 N 1.46503 * 109.46991 * 120.00163 * 2 1 3 21 21 C 1.36938 * 119.99932 * 274.99459 * 20 2 1 22 22 H 1.07999 * 120.00230 * 0.02562 * 21 20 2 23 23 C 1.38816 * 120.00151 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99522 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00086 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47474 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47059 * 120.00259 * 25 23 21 28 28 H 1.48502 * 109.47403 * 239.99790 * 25 23 21 29 29 H 1.08997 * 109.47110 * 300.00081 * 1 2 3 30 30 H 1.09001 * 109.46693 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47362 * 55.00034 * 4 2 1 33 33 H 1.09004 * 109.47415 * 294.99863 * 4 2 1 34 34 H 1.08998 * 109.47216 * 299.99695 * 7 5 4 35 35 H 1.08996 * 109.47180 * 60.00138 * 7 5 4 36 36 H 1.08998 * 109.46940 * 179.97438 * 7 5 4 37 37 H 0.97004 * 119.99868 * 24.99999 * 8 5 4 38 38 H 1.07994 * 119.96223 * 0.02562 * 12 11 9 39 39 H 1.08001 * 119.77782 * 180.02562 * 13 12 11 40 40 H 1.08006 * 124.20542 * 179.97438 * 16 15 14 41 41 H 1.08007 * 119.97481 * 359.97438 * 19 11 9 42 42 H 0.97000 * 120.00277 * 95.00001 * 20 2 1 43 43 H 0.97004 * 120.00047 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1824 9 6 5.3748 -0.9912 0.2733 10 8 5.9874 -0.0831 -0.2541 11 6 5.9680 -1.7174 1.4138 12 6 5.2588 -2.7635 2.0200 13 6 5.8016 -3.4362 3.0728 14 6 7.0649 -3.0920 3.5562 15 16 8.0305 -3.7507 4.8740 16 6 9.2794 -2.6337 4.5514 17 7 8.9870 -1.8729 3.5665 18 6 7.7936 -2.0504 2.9666 19 6 7.2248 -1.3616 1.8808 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8920 1.0403 2.4244 23 6 2.6123 -0.6618 3.5091 24 7 2.9262 -1.9386 3.4497 25 14 2.7902 0.2699 5.1182 26 1 2.3742 1.6818 4.9214 27 1 1.9300 -0.3595 6.1523 28 1 4.2071 0.2279 5.5607 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.7722 -2.2741 -2.6699 35 1 3.6264 -0.6887 -3.4657 36 1 5.1507 -1.1477 -2.6701 37 1 3.6647 -2.0585 0.2386 38 1 4.2809 -3.0364 1.6519 39 1 5.2511 -4.2416 3.5360 40 1 10.2035 -2.5788 5.1077 41 1 7.7670 -0.5550 1.4097 42 1 2.2490 -1.6318 1.1526 43 1 3.2495 -2.3959 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135825745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:01 Heat of formation + Delta-G solvation = 19.073956 kcal Electronic energy + Delta-G solvation = -27184.286999 eV Core-core repulsion = 23548.724723 eV Total energy + Delta-G solvation = -3635.562276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60533 -40.56861 -38.40298 -37.52450 -35.78670 -34.04608 -32.58810 -31.88468 -30.76915 -30.00566 -27.57650 -26.15029 -25.52518 -25.02235 -23.14634 -22.16868 -21.69175 -20.97189 -19.65464 -19.08278 -18.14518 -17.56277 -17.18463 -16.76846 -16.45045 -16.05350 -15.64954 -15.60281 -15.48997 -15.15450 -14.88529 -14.67713 -14.33975 -14.18715 -14.01684 -13.56405 -13.30885 -13.23919 -12.92301 -12.88458 -12.79677 -12.71321 -12.60300 -12.26401 -12.13349 -12.04760 -11.69263 -11.58173 -11.38748 -11.12120 -10.92174 -10.85895 -10.69420 -9.91832 -9.68507 -9.05782 -8.74936 -7.83317 -5.00790 -0.52579 -0.24273 0.27139 0.70657 1.35868 1.40718 1.47855 1.49011 1.92332 2.30254 2.60063 2.87777 3.08993 3.52083 3.58793 3.76578 3.91921 4.06189 4.15986 4.19979 4.22256 4.27408 4.40748 4.57701 4.59890 4.70816 4.76219 4.86584 4.90570 4.94430 5.07359 5.10375 5.16328 5.18811 5.26308 5.36328 5.39839 5.44937 5.62434 5.64789 5.67614 5.77400 6.41686 6.54844 6.68130 7.34254 7.51098 8.19921 8.49268 9.37275 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.004993 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.208311 B = 5605.978549 C = 7192.573016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.119 4.119 5 C 0.144 3.856 6 H 0.057 0.943 7 C -0.152 4.152 8 N -0.681 5.681 9 C 0.566 3.434 10 O -0.592 6.592 11 C -0.129 4.129 12 C -0.006 4.006 13 C -0.077 4.077 14 C -0.177 4.177 15 S 0.137 5.863 16 C 0.066 3.934 17 N -0.494 5.494 18 C 0.036 3.964 19 C -0.028 4.028 20 N -0.717 5.717 21 C -0.224 4.224 22 H 0.050 0.950 23 C -0.039 4.039 24 N -0.921 5.921 25 Si 0.927 3.073 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.311 1.311 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.406 0.594 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.246 0.754 41 H 0.127 0.873 42 H 0.376 0.624 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -7.870 -4.792 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.045 0.955 4 C -0.158 4.158 5 C 0.040 3.960 6 H 0.075 0.925 7 C -0.211 4.211 8 N -0.332 5.332 9 C 0.354 3.646 10 O -0.475 6.475 11 C -0.135 4.135 12 C -0.029 4.029 13 C -0.099 4.099 14 C -0.296 4.296 15 S 0.390 5.610 16 C -0.239 4.239 17 N -0.207 5.207 18 C -0.082 4.082 19 C -0.050 4.050 20 N -0.360 5.360 21 C -0.357 4.357 22 H 0.068 0.932 23 C -0.234 4.234 24 N -0.571 5.571 25 Si 0.761 3.239 26 H -0.214 1.214 27 H -0.221 1.221 28 H -0.239 1.239 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.245 0.755 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.262 0.738 41 H 0.145 0.855 42 H 0.211 0.789 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.276 -7.455 -4.472 10.169 hybrid contribution -0.283 1.004 1.017 1.457 sum 4.993 -6.451 -3.454 8.858 Atomic orbital electron populations 1.22259 0.97600 1.01111 1.00310 1.20495 0.92759 0.94888 0.86603 0.95512 1.22138 0.92484 1.02370 0.98766 1.21016 0.93582 0.95972 0.85447 0.92517 1.22115 1.00604 1.02058 0.96282 1.45903 1.16537 1.37121 1.33652 1.18093 0.81973 0.82347 0.82210 1.90666 1.63346 1.32488 1.61037 1.19781 0.95192 0.99516 0.98980 1.20982 0.97306 0.91276 0.93368 1.20085 0.91711 1.01604 0.96540 1.24345 1.01568 1.01596 1.02133 1.83603 1.10178 1.36829 1.30363 1.28779 1.04853 0.94037 0.96241 1.66186 1.16839 1.27333 1.10369 1.19080 0.91057 0.98271 0.99767 1.20602 0.93980 0.97388 0.93014 1.42464 1.78091 1.09961 1.05533 1.19220 1.34593 0.93264 0.88620 0.93185 1.24753 1.03481 0.96795 0.98333 1.69523 1.51496 1.07856 1.28201 0.85778 0.75898 0.78401 0.83785 1.21383 1.22080 1.23931 0.95375 0.91392 0.93095 0.87214 0.90126 0.91009 0.89437 0.94359 0.75459 0.83337 0.83338 0.73824 0.85525 0.78898 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.49 71.98 0.68 -4.02 16 2 C 0.16 5.52 2.89 44.99 0.13 5.65 16 3 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 4 C -0.12 -3.06 4.43 30.60 0.14 -2.93 16 5 C 0.14 4.33 2.57 44.99 0.12 4.45 16 6 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 7 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 8 N -0.68 -23.75 3.75 -445.57 -1.67 -25.42 16 9 C 0.57 23.39 7.73 86.73 0.67 24.06 16 10 O -0.59 -27.67 15.96 -3.95 -0.06 -27.74 16 11 C -0.13 -5.18 5.86 -20.21 -0.12 -5.30 16 12 C -0.01 -0.23 7.75 22.27 0.17 -0.06 16 13 C -0.08 -2.61 9.99 22.12 0.22 -2.38 16 14 C -0.18 -5.99 6.56 23.05 0.15 -5.84 16 15 S 0.14 3.33 23.17 -56.49 -1.31 2.02 16 16 C 0.07 1.58 12.09 130.82 1.58 3.16 16 17 N -0.49 -16.58 10.57 -194.90 -2.06 -18.64 16 18 C 0.04 1.37 6.99 39.73 0.28 1.65 16 19 C -0.03 -1.14 9.65 22.96 0.22 -0.92 16 20 N -0.72 -30.30 3.84 -322.94 -1.24 -31.54 16 21 C -0.22 -11.35 9.93 84.03 0.83 -10.52 16 22 H 0.05 2.67 7.83 -2.91 -0.02 2.64 16 23 C -0.04 -1.98 5.50 84.86 0.47 -1.51 16 24 N -0.92 -45.16 10.70 21.65 0.23 -44.93 16 25 Si 0.93 45.24 29.55 68.60 2.03 47.27 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.41 13.69 4.51 -92.71 -0.42 13.27 16 38 H 0.15 5.33 5.82 -2.91 -0.02 5.32 16 39 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.25 3.25 8.06 -2.91 -0.02 3.22 16 41 H 0.13 5.32 7.60 -2.91 -0.02 5.30 16 42 H 0.38 15.76 5.70 -92.71 -0.53 15.23 16 43 H 0.25 12.30 8.31 -92.71 -0.77 11.53 16 Total: -1.00 -64.74 366.45 2.24 -62.49 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.10 Total: 33.98 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.23 Total: 2.52 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -4.74 Total: -120.54 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -64.74 2.24 -62.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.566 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds