Wall clock time and date at job start Tue Mar 31 2020 18:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21585 * 119.99553 * 0.02562 * 9 8 5 11 11 C 1.47653 * 120.00363 * 180.02562 * 9 8 5 12 12 C 1.40162 * 119.85460 * 359.72630 * 11 9 8 13 13 C 1.36223 * 120.07564 * 179.69904 * 12 11 9 14 14 C 1.39582 * 120.43419 * 0.57660 * 13 12 11 15 15 S 1.76142 * 131.52879 * 179.72504 * 14 13 12 16 16 C 1.70631 * 90.85516 * 179.97438 * 15 14 13 17 17 N 1.27850 * 111.58908 * 359.97438 * 16 15 14 18 18 C 1.34748 * 117.83901 * 0.02562 * 17 16 15 19 19 C 1.38719 * 119.85686 * 180.02562 * 11 9 8 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 30 30 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 35 35 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 36 36 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 37 37 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 38 38 H 1.07995 * 119.96178 * 359.97438 * 12 11 9 39 39 H 1.07998 * 119.77864 * 180.28551 * 13 12 11 40 40 H 1.07999 * 124.20534 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.97537 * 359.97438 * 19 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 43 43 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9375 0.4322 0.5721 11 6 5.5475 2.6272 1.2673 12 6 4.6479 3.5267 1.8557 13 6 5.0020 4.8305 2.0301 14 6 6.2550 5.2845 1.6150 15 16 7.0029 6.8775 1.6881 16 6 8.4182 6.2751 0.9494 17 7 8.3184 5.0274 0.6892 18 6 7.1694 4.4056 1.0194 19 6 6.7968 3.0606 0.8481 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 2.3867 1.6851 -4.9180 27 1 4.2219 0.2312 -5.5507 28 1 1.9472 -0.3544 -6.1537 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 5.1715 -1.3617 2.5381 35 1 3.6546 -1.0593 3.4193 36 1 3.8002 -2.4819 2.3595 37 1 3.3284 1.4129 1.9028 38 1 3.6747 3.1847 2.1753 39 1 4.3068 5.5184 2.4882 40 1 9.2902 6.8733 0.7298 41 1 7.4843 2.3642 0.3913 42 1 2.2490 -1.6318 -1.1526 43 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135825747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:07 Heat of formation + Delta-G solvation = 28.735048 kcal Electronic energy + Delta-G solvation = -25929.452115 eV Core-core repulsion = 22294.308775 eV Total energy + Delta-G solvation = -3635.143339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.79903 -39.50169 -37.17437 -36.52973 -34.49362 -32.23816 -31.53514 -30.99580 -29.67753 -28.57168 -26.32846 -25.45498 -24.19402 -23.55323 -22.37595 -21.14058 -20.21119 -19.72584 -18.97099 -17.46734 -17.03606 -16.55665 -16.44752 -15.58484 -15.16296 -14.79730 -14.63352 -14.37123 -14.18318 -13.94416 -13.83572 -13.61548 -13.26554 -13.03779 -12.70291 -12.32257 -12.18840 -12.06632 -11.94029 -11.72608 -11.60033 -11.30209 -11.03343 -10.81417 -10.60264 -10.42997 -10.36409 -10.18710 -9.97481 -9.86903 -9.71706 -9.59337 -9.07383 -8.85466 -8.74526 -8.40258 -6.89153 -5.70147 -2.97967 0.10164 0.58078 0.91900 1.37520 1.98946 2.90812 3.23120 3.47885 3.53124 3.55600 3.73423 3.78517 4.28293 4.64828 4.66681 4.68071 4.84992 4.96319 5.09621 5.19979 5.41033 5.48337 5.60747 5.64371 5.69690 5.79358 5.81175 5.89454 5.94878 5.99624 6.01892 6.13527 6.27418 6.30355 6.36862 6.44851 6.57424 6.70739 6.80213 6.92418 7.08168 7.26492 7.73329 7.75922 8.45926 8.48381 9.59856 10.16859 10.50910 11.52668 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.003408 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.965032 B = 8214.723144 C = 9427.794217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.559 3.441 10 O -0.523 6.523 11 C -0.112 4.112 12 C -0.068 4.068 13 C -0.078 4.078 14 C -0.164 4.164 15 S 0.096 5.904 16 C 0.064 3.936 17 N -0.456 5.456 18 C 0.069 3.931 19 C 0.003 3.997 20 N -0.720 5.720 21 C -0.234 4.234 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.901 3.099 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.393 0.607 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.205 0.795 41 H 0.152 0.848 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 15.758 17.570 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.360 5.360 9 C 0.345 3.655 10 O -0.400 6.400 11 C -0.119 4.119 12 C -0.091 4.091 13 C -0.101 4.101 14 C -0.283 4.283 15 S 0.349 5.651 16 C -0.241 4.241 17 N -0.167 5.167 18 C -0.051 4.051 19 C -0.019 4.019 20 N -0.362 5.362 21 C -0.365 4.365 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.732 3.268 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.228 0.772 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.222 0.778 41 H 0.169 0.831 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.089 16.035 17.125 24.005 hybrid contribution -0.294 -0.252 -1.009 1.081 sum 4.794 15.783 16.115 23.061 Atomic orbital electron populations 1.22460 0.99541 1.00824 0.99745 1.20225 0.91570 0.95521 0.86574 0.93682 1.22179 0.93612 1.02363 0.98831 1.21084 0.95201 0.79681 1.00075 0.87422 1.22186 1.01593 1.00236 0.97931 1.45856 1.15994 1.11886 1.62242 1.17907 0.82440 0.86695 0.78488 1.90832 1.51087 1.55686 1.42356 1.19862 0.94878 0.94664 1.02465 1.21006 0.99039 0.92456 0.96551 1.19954 0.93445 0.96083 1.00620 1.24061 1.00740 0.96914 1.06568 1.83980 1.10962 1.08789 1.61345 1.28109 1.02528 0.93645 0.99856 1.66201 1.22693 1.08768 1.19057 1.19093 0.88804 0.95359 1.01799 1.20805 0.95260 0.91964 0.93823 1.42398 1.77971 1.10564 1.05257 1.19190 1.36258 0.93706 0.87390 0.91483 1.24682 1.02137 0.95936 0.97944 1.69653 1.50882 1.08637 1.28727 0.86208 0.77375 0.78794 0.84376 1.20721 1.21884 1.21963 0.92907 0.93514 0.94742 0.92032 0.90478 0.92453 0.93105 0.91616 0.77219 0.84219 0.84537 0.77828 0.83082 0.78329 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.26 2.52 -67.93 -0.17 2.09 16 6 H 0.11 2.26 7.05 -51.93 -0.37 1.89 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 8 N -0.71 -10.07 4.40 -54.81 -0.24 -10.31 16 9 C 0.56 9.30 7.73 -12.42 -0.10 9.21 16 10 O -0.52 -11.03 15.96 5.29 0.08 -10.95 16 11 C -0.11 -1.56 5.86 -105.15 -0.62 -2.17 16 12 C -0.07 -0.71 9.47 -39.58 -0.37 -1.08 16 13 C -0.08 -0.75 9.99 -39.81 -0.40 -1.15 16 14 C -0.16 -1.83 6.56 -38.37 -0.25 -2.08 16 15 S 0.10 0.79 23.17 -107.50 -2.49 -1.70 16 16 C 0.06 0.57 12.09 51.10 0.62 1.19 16 17 N -0.46 -5.86 10.57 -13.02 -0.14 -6.00 16 18 C 0.07 0.93 6.99 -84.98 -0.59 0.34 16 19 C 0.00 0.04 9.65 -38.51 -0.37 -0.33 16 20 N -0.72 -17.53 4.49 -53.42 -0.24 -17.77 16 21 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 25 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 4.24 6.60 -40.82 -0.27 3.97 16 38 H 0.14 1.03 6.37 -52.49 -0.33 0.70 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.21 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.15 2.36 7.60 -52.49 -0.40 1.97 16 42 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -35.13 375.29 -9.62 -44.75 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.85 Total: 10.45 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.10 Total: -4.41 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.11 Total: -61.92 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.13 -9.62 -44.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.489 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds