Wall clock time and date at job start Tue Mar 31 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21585 * 119.99553 * 0.02562 * 9 8 5 11 11 C 1.47653 * 120.00363 * 180.02562 * 9 8 5 12 12 C 1.40162 * 119.85460 * 359.72630 * 11 9 8 13 13 C 1.36223 * 120.07564 * 179.69904 * 12 11 9 14 14 C 1.39582 * 120.43419 * 0.57660 * 13 12 11 15 15 S 1.76142 * 131.52879 * 179.72504 * 14 13 12 16 16 C 1.70631 * 90.85516 * 179.97438 * 15 14 13 17 17 N 1.27850 * 111.58908 * 359.97438 * 16 15 14 18 18 C 1.34748 * 117.83901 * 0.02562 * 17 16 15 19 19 C 1.38719 * 119.85686 * 180.02562 * 11 9 8 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 30 30 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 35 35 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 36 36 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 37 37 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 38 38 H 1.07995 * 119.96178 * 359.97438 * 12 11 9 39 39 H 1.07998 * 119.77864 * 180.28551 * 13 12 11 40 40 H 1.07999 * 124.20534 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.97537 * 359.97438 * 19 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 43 43 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9375 0.4322 0.5721 11 6 5.5475 2.6272 1.2673 12 6 4.6479 3.5267 1.8557 13 6 5.0020 4.8305 2.0301 14 6 6.2550 5.2845 1.6150 15 16 7.0029 6.8775 1.6881 16 6 8.4182 6.2751 0.9494 17 7 8.3184 5.0274 0.6892 18 6 7.1694 4.4056 1.0194 19 6 6.7968 3.0606 0.8481 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 2.3867 1.6851 -4.9180 27 1 4.2219 0.2312 -5.5507 28 1 1.9472 -0.3544 -6.1537 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 5.1715 -1.3617 2.5381 35 1 3.6546 -1.0593 3.4193 36 1 3.8002 -2.4819 2.3595 37 1 3.3284 1.4129 1.9028 38 1 3.6747 3.1847 2.1753 39 1 4.3068 5.5184 2.4882 40 1 9.2902 6.8733 0.7298 41 1 7.4843 2.3642 0.3913 42 1 2.2490 -1.6318 -1.1526 43 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135825747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:06 Heat of formation + Delta-G solvation = 3.983525 kcal Electronic energy + Delta-G solvation = -25930.525421 eV Core-core repulsion = 22294.308775 eV Total energy + Delta-G solvation = -3636.216646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75670 -40.67116 -38.43780 -37.65157 -36.10342 -34.04970 -32.69547 -32.05475 -30.74413 -30.32157 -27.57779 -26.28682 -25.68847 -25.12873 -23.26707 -22.35870 -21.43582 -21.18848 -19.84441 -19.25997 -18.29501 -17.61101 -17.36268 -16.81964 -16.52952 -16.17253 -15.72841 -15.68962 -15.57848 -15.20825 -15.02247 -14.82933 -14.48702 -14.28343 -14.16498 -13.60494 -13.36160 -13.20426 -13.09140 -12.95322 -12.93157 -12.79616 -12.65505 -12.24064 -12.16026 -12.15572 -11.81221 -11.55030 -11.40084 -11.23714 -11.06974 -10.91554 -10.73222 -10.09806 -9.85959 -9.19245 -8.93706 -7.92459 -5.16926 -0.70374 -0.39829 0.19827 0.61681 1.19098 1.40307 1.43050 1.50524 1.80612 2.09776 2.55420 2.68074 2.99681 3.42696 3.45320 3.64974 3.83915 3.92936 4.03667 4.06954 4.10809 4.16409 4.42265 4.45841 4.56700 4.64097 4.71166 4.81913 4.85291 4.94212 4.95596 4.98106 5.06354 5.09895 5.13831 5.25616 5.36879 5.42659 5.45749 5.52185 5.63887 5.67877 6.31500 6.49167 6.57731 7.26152 7.37205 8.18722 8.37054 9.31705 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.003408 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.965032 B = 8214.723144 C = 9427.794217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.045 0.955 4 C -0.117 4.117 5 C 0.145 3.855 6 H 0.046 0.954 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.552 3.448 10 O -0.585 6.585 11 C -0.123 4.123 12 C -0.066 4.066 13 C -0.064 4.064 14 C -0.184 4.184 15 S 0.169 5.831 16 C 0.068 3.932 17 N -0.506 5.506 18 C 0.049 3.951 19 C -0.029 4.029 20 N -0.732 5.732 21 C -0.222 4.222 22 H 0.071 0.929 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.957 3.043 26 H -0.266 1.266 27 H -0.304 1.304 28 H -0.291 1.291 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.242 0.758 41 H 0.118 0.882 42 H 0.370 0.630 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 19.531 20.491 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.064 0.936 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.340 3.660 10 O -0.466 6.466 11 C -0.129 4.129 12 C -0.088 4.088 13 C -0.086 4.086 14 C -0.304 4.304 15 S 0.424 5.576 16 C -0.236 4.236 17 N -0.220 5.220 18 C -0.070 4.070 19 C -0.051 4.051 20 N -0.373 5.373 21 C -0.354 4.354 22 H 0.089 0.911 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.788 3.212 26 H -0.191 1.191 27 H -0.232 1.232 28 H -0.218 1.218 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.252 0.748 38 H 0.192 0.808 39 H 0.196 0.804 40 H 0.258 0.742 41 H 0.136 0.864 42 H 0.201 0.799 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.796 19.888 20.111 28.422 hybrid contribution 0.431 -1.233 -1.804 2.227 sum 3.227 18.655 18.307 26.336 Atomic orbital electron populations 1.22304 0.97575 1.00866 1.00831 1.20563 0.92734 0.95359 0.85941 0.93684 1.22094 0.92301 1.02454 0.98718 1.20899 0.95952 0.80614 0.98487 0.93573 1.22089 1.00293 1.00332 0.98264 1.45688 1.15535 1.11790 1.61341 1.18458 0.82448 0.87637 0.77496 1.90796 1.52964 1.57554 1.45236 1.19710 0.95521 0.93573 1.04132 1.21303 0.99502 0.92275 0.95718 1.20445 0.93172 0.96197 0.98803 1.24524 1.01166 0.98623 1.06037 1.83715 1.08860 1.05498 1.59530 1.28845 1.04178 0.92834 0.97762 1.66226 1.23401 1.10695 1.21638 1.19124 0.90008 0.95177 1.02688 1.20675 0.95769 0.92786 0.95883 1.42630 1.78179 1.10120 1.06324 1.19546 1.33534 0.93821 0.88519 0.91130 1.25399 1.03685 0.96831 1.01134 1.69799 1.53177 1.10114 1.28979 0.85296 0.76394 0.78497 0.81060 1.19051 1.23207 1.21794 0.95256 0.94024 0.90158 0.86950 0.90464 0.94629 0.89505 0.91098 0.74765 0.80766 0.80354 0.74197 0.86401 0.79881 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 9.49 71.98 0.68 -4.18 16 2 C 0.16 5.72 2.84 44.99 0.13 5.84 16 3 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16 4 C -0.12 -3.15 4.29 30.60 0.13 -3.02 16 5 C 0.14 4.56 2.52 44.99 0.11 4.67 16 6 H 0.05 2.07 7.05 -2.38 -0.02 2.05 16 7 C -0.15 -3.93 9.48 71.98 0.68 -3.25 16 8 N -0.69 -19.18 4.40 -445.58 -1.96 -21.14 16 9 C 0.55 19.35 7.73 86.73 0.67 20.02 16 10 O -0.58 -27.19 15.96 -3.98 -0.06 -27.25 16 11 C -0.12 -3.52 5.86 -20.21 -0.12 -3.64 16 12 C -0.07 -1.20 9.47 22.27 0.21 -0.99 16 13 C -0.06 -1.00 9.99 22.12 0.22 -0.78 16 14 C -0.18 -3.72 6.56 23.05 0.15 -3.57 16 15 S 0.17 2.20 23.17 -56.49 -1.31 0.89 16 16 C 0.07 1.08 12.09 130.82 1.58 2.66 16 17 N -0.51 -13.16 10.57 -194.90 -2.06 -15.22 16 18 C 0.05 1.36 6.99 39.73 0.28 1.64 16 19 C -0.03 -0.94 9.65 22.96 0.22 -0.72 16 20 N -0.73 -36.27 4.49 -322.93 -1.45 -37.72 16 21 C -0.22 -12.53 9.93 84.04 0.83 -11.70 16 22 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 24 N -0.97 -62.07 13.06 21.65 0.28 -61.78 16 25 Si 0.96 48.91 29.55 68.60 2.03 50.94 16 26 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 28 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 7.65 6.60 -92.71 -0.61 7.04 16 38 H 0.18 1.80 6.37 -2.91 -0.02 1.78 16 39 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.24 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.12 4.36 7.60 -2.91 -0.02 4.34 16 42 H 0.37 20.10 7.80 -92.71 -0.72 19.38 16 43 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -85.17 375.29 1.44 -83.73 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.29 Total: 28.83 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.26 Total: -1.27 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -5.19 Total: -135.87 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.06 Total: -27.25 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.89 kcal Total: -85.17 1.44 -83.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.713 kcal (2) G-P(sol) polarization free energy of solvation -85.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds