Wall clock time and date at job start Tue Mar 31 2020 18:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47055 * 240.00758 * 2 1 3 5 5 C 1.52998 * 109.47188 * 175.00104 * 4 2 1 6 6 H 1.08997 * 109.46800 * 304.99458 * 5 4 2 7 7 C 1.53005 * 109.46706 * 184.99621 * 5 4 2 8 8 N 1.46497 * 109.47301 * 64.99649 * 5 4 2 9 9 C 1.36936 * 119.99881 * 205.00117 * 8 5 4 10 10 H 1.07997 * 120.00369 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00129 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99752 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00327 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46797 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47305 * 119.99325 * 13 11 9 16 16 H 1.48501 * 109.47171 * 240.00019 * 13 11 9 17 17 N 1.46493 * 109.47617 * 120.00613 * 2 1 3 18 18 C 1.34777 * 119.99729 * 275.00031 * 17 2 1 19 19 O 1.21575 * 120.00271 * 359.97438 * 18 17 2 20 20 C 1.47661 * 120.00028 * 179.97438 * 18 17 2 21 21 C 1.40163 * 119.85488 * 359.97438 * 20 18 17 22 22 C 1.36220 * 120.07615 * 180.02562 * 21 20 18 23 23 C 1.39573 * 120.43786 * 359.95002 * 22 21 20 24 24 S 1.76152 * 131.53668 * 180.02562 * 23 22 21 25 25 C 1.70624 * 90.85732 * 179.97438 * 24 23 22 26 26 N 1.27845 * 111.58776 * 359.73622 * 25 24 23 27 27 C 1.34744 * 117.84315 * 0.49056 * 26 25 24 28 28 C 1.38719 * 119.85465 * 180.02562 * 20 18 17 29 29 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46735 * 299.99643 * 1 2 3 31 31 H 1.09004 * 109.47177 * 59.99674 * 1 2 3 32 32 H 1.09004 * 109.46700 * 295.00047 * 4 2 1 33 33 H 1.08999 * 109.47419 * 54.99416 * 4 2 1 34 34 H 1.09007 * 109.46874 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47358 * 299.99496 * 7 5 4 36 36 H 1.08993 * 109.47192 * 60.00077 * 7 5 4 37 37 H 0.97005 * 120.00150 * 25.00011 * 8 5 4 38 38 H 0.96999 * 119.99942 * 180.02562 * 12 11 9 39 39 H 0.97004 * 120.00696 * 94.99159 * 17 2 1 40 40 H 1.08002 * 119.95957 * 359.97438 * 21 20 18 41 41 H 1.08002 * 119.77800 * 179.97438 * 22 21 20 42 42 H 1.08005 * 124.20205 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.97848 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0643 -1.2249 -2.6243 8 7 4.1536 -1.3342 -0.1827 9 6 5.3943 -0.9856 0.2804 10 1 5.9389 -0.1794 -0.1886 11 6 5.9526 -1.6690 1.3519 12 7 5.2891 -2.6519 1.9231 13 14 7.6453 -1.1940 1.9831 14 1 8.1764 -0.0669 1.1751 15 1 7.5449 -0.7797 3.4056 16 1 8.5604 -2.3580 1.8698 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3570 19 8 1.8584 1.1613 2.4116 20 6 2.6389 -0.7147 3.5627 21 6 2.9704 -2.0749 3.4965 22 6 3.4241 -2.7218 4.6062 23 6 3.5636 -2.0388 5.8153 24 16 4.1128 -2.5724 7.4017 25 6 3.8783 -1.0067 8.0379 26 7 3.4457 -0.1972 7.1479 27 6 3.2397 -0.6785 5.9063 28 6 2.7698 -0.0199 4.7562 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.7515 -1.7714 -1.2058 33 1 1.6053 -0.2616 -2.1371 34 1 5.1507 -1.1476 -2.6705 35 1 3.7721 -2.2739 -2.6703 36 1 3.6262 -0.6885 -3.4659 37 1 3.6647 -2.0585 0.2384 38 1 5.6790 -3.1292 2.6721 39 1 2.2490 -1.6319 1.1525 40 1 2.8653 -2.6109 2.5648 41 1 3.6777 -3.7701 4.5498 42 1 4.0748 -0.7326 9.0640 43 1 2.5125 1.0280 4.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135825750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:11 Heat of formation + Delta-G solvation = 35.536258 kcal Electronic energy + Delta-G solvation = -27182.188117 eV Core-core repulsion = 23547.339700 eV Total energy + Delta-G solvation = -3634.848417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.23389 -39.17080 -36.98609 -36.12726 -34.23504 -32.38965 -31.14898 -30.49603 -29.35031 -28.49820 -26.37701 -24.86946 -23.75813 -23.65608 -21.77785 -20.86740 -20.28623 -19.53353 -18.36044 -17.26759 -16.81655 -16.18254 -15.81933 -15.32710 -14.84395 -14.64462 -14.24784 -14.15505 -13.84939 -13.65695 -13.50870 -13.36284 -12.98849 -12.76045 -12.68725 -12.18886 -11.96086 -11.80903 -11.70110 -11.54472 -11.40684 -11.03683 -10.88777 -10.78962 -10.71403 -10.40624 -10.27341 -9.95453 -9.82162 -9.75057 -9.50610 -9.36256 -9.04180 -8.47334 -8.33032 -7.78940 -6.99984 -5.90447 -3.11380 0.73356 1.18178 1.46443 1.90895 2.65608 3.37908 3.38879 3.46134 3.48400 3.66959 4.26213 4.31833 4.53686 4.92721 5.03794 5.21418 5.37116 5.40822 5.46519 5.49636 5.55375 5.62724 5.65479 5.81984 5.89025 5.93174 5.97682 6.09680 6.18259 6.20217 6.33607 6.37173 6.40912 6.51687 6.55086 6.67482 6.75793 6.80854 6.97999 7.01823 7.13203 7.64276 7.77007 8.12916 8.30617 8.82965 9.42849 9.94590 10.30607 11.32007 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.004993 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.048487 B = 5607.050349 C = 7193.185176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.219 4.219 10 H 0.068 0.932 11 C -0.009 4.009 12 N -0.926 5.926 13 Si 0.897 3.103 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.293 1.293 17 N -0.691 5.691 18 C 0.574 3.426 19 O -0.558 6.558 20 C -0.118 4.118 21 C 0.001 3.999 22 C -0.079 4.079 23 C -0.149 4.149 24 S 0.071 5.929 25 C 0.049 3.951 26 N -0.454 5.454 27 C 0.046 3.954 28 C -0.004 4.004 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.403 0.597 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.198 0.802 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -2.229 3.501 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.103 0.897 4 C -0.172 4.172 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.350 4.350 10 H 0.086 0.914 11 C -0.204 4.204 12 N -0.575 5.575 13 Si 0.729 3.271 14 H -0.208 1.208 15 H -0.220 1.220 16 H -0.221 1.221 17 N -0.344 5.344 18 C 0.361 3.639 19 O -0.439 6.439 20 C -0.124 4.124 21 C -0.023 4.023 22 C -0.102 4.102 23 C -0.268 4.268 24 S 0.323 5.677 25 C -0.257 4.257 26 N -0.166 5.166 27 C -0.073 4.073 28 C -0.026 4.026 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.211 0.789 38 H 0.064 0.936 39 H 0.242 0.758 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.215 0.785 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.803 -1.632 4.167 8.996 hybrid contribution 1.105 0.001 -0.109 1.110 sum -6.699 -1.632 4.058 8.000 Atomic orbital electron populations 1.22212 0.96159 1.01690 1.02049 1.20832 0.92573 0.97797 0.84327 0.89748 1.22218 0.97752 1.00633 0.96643 1.20305 0.89732 0.95956 0.88162 0.93312 1.22410 1.01537 1.00340 0.98030 1.42468 1.18679 1.39867 1.34808 1.19262 0.92995 1.12663 1.10105 0.91419 1.24475 0.98329 0.98774 0.98833 1.69496 1.37521 1.24482 1.25952 0.86244 0.84709 0.77457 0.78652 1.20849 1.22009 1.22052 1.45864 1.65583 1.14350 1.08562 1.17863 0.76801 0.86063 0.83154 1.90701 1.51954 1.15639 1.85563 1.19713 1.04361 0.94808 0.93552 1.21015 0.90901 0.92620 0.97735 1.19864 1.00663 1.00256 0.89421 1.23972 1.06352 0.97717 0.98778 1.83813 1.67248 1.14695 1.01897 1.27856 1.01936 0.92706 1.03205 1.66115 1.13871 1.36259 1.00331 1.18928 1.06200 0.90374 0.91753 1.20604 0.93774 0.99830 0.88353 0.92762 0.92308 0.92070 0.91707 0.90686 0.92874 0.93587 0.94544 0.78897 0.93584 0.75766 0.83358 0.85102 0.78493 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 2 C 0.15 2.30 2.57 -67.93 -0.17 2.12 16 3 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.17 2.95 2.89 -67.93 -0.20 2.76 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 8 N -0.72 -15.10 3.84 -53.43 -0.21 -15.31 16 9 C -0.22 -5.45 9.93 -15.06 -0.15 -5.60 16 10 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.93 -22.72 10.72 55.49 0.59 -22.13 16 13 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 N -0.69 -11.90 3.75 -54.81 -0.21 -12.10 16 18 C 0.57 11.35 7.73 -12.41 -0.10 11.25 16 19 O -0.56 -12.34 15.96 5.30 0.08 -12.25 16 20 C -0.12 -2.28 5.86 -105.15 -0.62 -2.90 16 21 C 0.00 0.01 7.76 -39.58 -0.31 -0.30 16 22 C -0.08 -1.36 9.99 -39.81 -0.40 -1.76 16 23 C -0.15 -2.59 6.57 -38.38 -0.25 -2.84 16 24 S 0.07 0.97 23.17 -107.50 -2.49 -1.52 16 25 C 0.05 0.66 12.09 51.10 0.62 1.28 16 26 N -0.45 -7.82 10.57 -13.03 -0.14 -7.96 16 27 C 0.05 0.85 6.99 -84.98 -0.59 0.26 16 28 C 0.00 -0.07 9.65 -38.51 -0.37 -0.44 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.38 7.96 5.70 -40.82 -0.23 7.72 16 38 H 0.25 6.30 8.31 -40.82 -0.34 5.96 16 39 H 0.40 6.81 4.51 -40.82 -0.18 6.63 16 40 H 0.15 2.64 5.82 -52.49 -0.31 2.34 16 41 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.14 2.71 7.60 -52.49 -0.40 2.31 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -28.67 366.50 -9.61 -38.28 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.71 Total: 13.22 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.05 Total: -2.52 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.05 Total: -57.50 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.67 -9.61 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.819 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds