Wall clock time and date at job start Tue Mar 31 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47055 * 240.00758 * 2 1 3 5 5 C 1.52998 * 109.47188 * 175.00104 * 4 2 1 6 6 H 1.08997 * 109.46800 * 304.99458 * 5 4 2 7 7 C 1.53005 * 109.46706 * 184.99621 * 5 4 2 8 8 N 1.46497 * 109.47301 * 64.99649 * 5 4 2 9 9 C 1.36936 * 119.99881 * 205.00117 * 8 5 4 10 10 H 1.07997 * 120.00369 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00129 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99752 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00327 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46797 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47305 * 119.99325 * 13 11 9 16 16 H 1.48501 * 109.47171 * 240.00019 * 13 11 9 17 17 N 1.46493 * 109.47617 * 120.00613 * 2 1 3 18 18 C 1.34777 * 119.99729 * 275.00031 * 17 2 1 19 19 O 1.21575 * 120.00271 * 359.97438 * 18 17 2 20 20 C 1.47661 * 120.00028 * 179.97438 * 18 17 2 21 21 C 1.40163 * 119.85488 * 359.97438 * 20 18 17 22 22 C 1.36220 * 120.07615 * 180.02562 * 21 20 18 23 23 C 1.39573 * 120.43786 * 359.95002 * 22 21 20 24 24 S 1.76152 * 131.53668 * 180.02562 * 23 22 21 25 25 C 1.70624 * 90.85732 * 179.97438 * 24 23 22 26 26 N 1.27845 * 111.58776 * 359.73622 * 25 24 23 27 27 C 1.34744 * 117.84315 * 0.49056 * 26 25 24 28 28 C 1.38719 * 119.85465 * 180.02562 * 20 18 17 29 29 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46735 * 299.99643 * 1 2 3 31 31 H 1.09004 * 109.47177 * 59.99674 * 1 2 3 32 32 H 1.09004 * 109.46700 * 295.00047 * 4 2 1 33 33 H 1.08999 * 109.47419 * 54.99416 * 4 2 1 34 34 H 1.09007 * 109.46874 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47358 * 299.99496 * 7 5 4 36 36 H 1.08993 * 109.47192 * 60.00077 * 7 5 4 37 37 H 0.97005 * 120.00150 * 25.00011 * 8 5 4 38 38 H 0.96999 * 119.99942 * 180.02562 * 12 11 9 39 39 H 0.97004 * 120.00696 * 94.99159 * 17 2 1 40 40 H 1.08002 * 119.95957 * 359.97438 * 21 20 18 41 41 H 1.08002 * 119.77800 * 179.97438 * 22 21 20 42 42 H 1.08005 * 124.20205 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.97848 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0643 -1.2249 -2.6243 8 7 4.1536 -1.3342 -0.1827 9 6 5.3943 -0.9856 0.2804 10 1 5.9389 -0.1794 -0.1886 11 6 5.9526 -1.6690 1.3519 12 7 5.2891 -2.6519 1.9231 13 14 7.6453 -1.1940 1.9831 14 1 8.1764 -0.0669 1.1751 15 1 7.5449 -0.7797 3.4056 16 1 8.5604 -2.3580 1.8698 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3570 19 8 1.8584 1.1613 2.4116 20 6 2.6389 -0.7147 3.5627 21 6 2.9704 -2.0749 3.4965 22 6 3.4241 -2.7218 4.6062 23 6 3.5636 -2.0388 5.8153 24 16 4.1128 -2.5724 7.4017 25 6 3.8783 -1.0067 8.0379 26 7 3.4457 -0.1972 7.1479 27 6 3.2397 -0.6785 5.9063 28 6 2.7698 -0.0199 4.7562 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.7515 -1.7714 -1.2058 33 1 1.6053 -0.2616 -2.1371 34 1 5.1507 -1.1476 -2.6705 35 1 3.7721 -2.2739 -2.6703 36 1 3.6262 -0.6885 -3.4659 37 1 3.6647 -2.0585 0.2384 38 1 5.6790 -3.1292 2.6721 39 1 2.2490 -1.6319 1.1525 40 1 2.8653 -2.6109 2.5648 41 1 3.6777 -3.7701 4.5498 42 1 4.0748 -0.7326 9.0640 43 1 2.5125 1.0280 4.8017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135825750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:10 Heat of formation + Delta-G solvation = 19.042919 kcal Electronic energy + Delta-G solvation = -27182.903322 eV Core-core repulsion = 23547.339700 eV Total energy + Delta-G solvation = -3635.563622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60554 -40.56915 -38.40332 -37.52470 -35.78732 -34.04555 -32.58787 -31.88550 -30.76881 -30.00601 -27.57607 -26.15048 -25.52585 -25.02264 -23.14688 -22.16883 -21.69215 -20.97200 -19.65504 -19.08318 -18.14540 -17.56299 -17.18522 -16.76878 -16.45088 -16.05462 -15.64772 -15.60384 -15.48961 -15.15578 -14.88640 -14.67718 -14.33990 -14.18703 -14.01729 -13.56427 -13.30933 -13.23877 -12.92320 -12.88724 -12.79679 -12.71255 -12.60319 -12.26380 -12.13392 -12.04825 -11.69255 -11.58198 -11.38781 -11.12121 -10.92195 -10.85905 -10.69439 -9.91859 -9.68547 -9.05845 -8.74981 -7.83338 -5.00844 -0.52643 -0.24348 0.27085 0.70606 1.35851 1.40663 1.47768 1.48943 1.92332 2.30191 2.60004 2.87684 3.08973 3.52032 3.58776 3.76525 3.91880 4.06179 4.15893 4.19986 4.22206 4.27351 4.40738 4.57635 4.59892 4.70816 4.76185 4.86564 4.90555 4.94405 5.07302 5.10367 5.16317 5.18791 5.26196 5.36222 5.39812 5.44926 5.62363 5.64749 5.67536 5.77393 6.41663 6.54843 6.68093 7.34234 7.51072 8.19910 8.49229 9.37247 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.004993 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.048487 B = 5607.050349 C = 7193.185176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.057 0.943 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.027 0.973 7 C -0.153 4.153 8 N -0.717 5.717 9 C -0.224 4.224 10 H 0.050 0.950 11 C -0.039 4.039 12 N -0.921 5.921 13 Si 0.927 3.073 14 H -0.288 1.288 15 H -0.311 1.311 16 H -0.293 1.293 17 N -0.681 5.681 18 C 0.566 3.434 19 O -0.592 6.592 20 C -0.129 4.129 21 C -0.007 4.007 22 C -0.077 4.077 23 C -0.177 4.177 24 S 0.137 5.863 25 C 0.066 3.934 26 N -0.494 5.494 27 C 0.037 3.963 28 C -0.028 4.028 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.027 0.973 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.406 0.594 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.246 0.754 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 -3.860 3.820 10.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.045 0.955 7 C -0.213 4.213 8 N -0.360 5.360 9 C -0.357 4.357 10 H 0.068 0.932 11 C -0.234 4.234 12 N -0.571 5.571 13 Si 0.761 3.239 14 H -0.214 1.214 15 H -0.239 1.239 16 H -0.221 1.221 17 N -0.332 5.332 18 C 0.354 3.646 19 O -0.475 6.475 20 C -0.135 4.135 21 C -0.030 4.030 22 C -0.099 4.099 23 C -0.296 4.296 24 S 0.390 5.610 25 C -0.239 4.239 26 N -0.207 5.207 27 C -0.082 4.082 28 C -0.050 4.050 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.060 0.940 39 H 0.245 0.755 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.262 0.738 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.556 -3.294 4.455 10.193 hybrid contribution 1.362 0.506 -0.046 1.454 sum -7.194 -2.787 4.408 8.886 Atomic orbital electron populations 1.22116 0.93676 1.02913 1.02355 1.21014 0.94468 0.96363 0.84174 0.92517 1.22139 0.94775 1.01738 0.97107 1.20495 0.92170 0.94383 0.87696 0.95511 1.22261 0.99999 1.00915 0.98107 1.42463 1.17610 1.40122 1.35851 1.19219 0.94379 1.12029 1.10067 0.93184 1.24755 0.99346 0.99653 0.99607 1.69525 1.37305 1.24411 1.25844 0.85779 0.84059 0.76927 0.77106 1.21379 1.23936 1.22077 1.45900 1.64529 1.14321 1.08458 1.18095 0.76666 0.85802 0.84061 1.90666 1.53714 1.16989 1.86165 1.19785 1.04849 0.95467 0.93360 1.20982 0.91660 0.92023 0.98287 1.20086 0.99620 1.00989 0.89244 1.24346 1.06632 0.97689 1.00971 1.83605 1.65432 1.13574 0.98351 1.28778 0.98294 0.92435 1.04398 1.66186 1.16636 1.37582 1.00337 1.19082 1.05795 0.91071 0.92218 1.20603 0.95476 0.99538 0.89366 0.91011 0.94353 0.89435 0.90127 0.87214 0.95375 0.93092 0.91398 0.78897 0.93986 0.75458 0.83341 0.83331 0.73826 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 2 C 0.14 4.33 2.57 44.99 0.12 4.45 16 3 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 4 C -0.12 -3.06 4.43 30.60 0.14 -2.93 16 5 C 0.16 5.52 2.89 44.99 0.13 5.65 16 6 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 7 C -0.15 -4.70 9.49 71.98 0.68 -4.02 16 8 N -0.72 -30.31 3.84 -322.95 -1.24 -31.55 16 9 C -0.22 -11.35 9.93 84.03 0.83 -10.52 16 10 H 0.05 2.67 7.83 -2.91 -0.02 2.64 16 11 C -0.04 -1.98 5.50 84.86 0.47 -1.52 16 12 N -0.92 -45.19 10.72 21.65 0.23 -44.96 16 13 Si 0.93 45.25 29.55 68.60 2.03 47.28 16 14 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 16 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 17 N -0.68 -23.74 3.75 -445.59 -1.67 -25.41 16 18 C 0.57 23.39 7.73 86.73 0.67 24.06 16 19 O -0.59 -27.67 15.96 -3.95 -0.06 -27.73 16 20 C -0.13 -5.18 5.86 -20.21 -0.12 -5.30 16 21 C -0.01 -0.24 7.76 22.27 0.17 -0.07 16 22 C -0.08 -2.60 9.99 22.12 0.22 -2.38 16 23 C -0.18 -5.99 6.57 23.05 0.15 -5.84 16 24 S 0.14 3.33 23.17 -56.49 -1.31 2.02 16 25 C 0.07 1.58 12.09 130.82 1.58 3.16 16 26 N -0.49 -16.59 10.57 -194.90 -2.06 -18.65 16 27 C 0.04 1.37 6.99 39.74 0.28 1.65 16 28 C -0.03 -1.14 9.65 22.97 0.22 -0.91 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.38 15.77 5.70 -92.70 -0.53 15.24 16 38 H 0.25 12.31 8.31 -92.71 -0.77 11.54 16 39 H 0.41 13.69 4.51 -92.71 -0.42 13.27 16 40 H 0.15 5.33 5.82 -2.91 -0.02 5.31 16 41 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.25 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.13 5.32 7.60 -2.91 -0.02 5.30 16 Total: -1.00 -64.77 366.50 2.24 -62.53 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.10 Total: 33.96 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.23 Total: 2.52 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.74 Total: -120.58 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -64.77 2.24 -62.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135825750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.570 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds