Wall clock time and date at job start Tue Mar 31 2020 18:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47399 * 2 1 4 4 C 1.53004 * 109.47357 * 240.00006 * 2 1 3 5 5 C 1.52998 * 109.47475 * 175.00124 * 4 2 1 6 6 H 1.09008 * 109.46859 * 305.00179 * 5 4 2 7 7 C 1.52996 * 109.47309 * 185.00095 * 5 4 2 8 8 N 1.46505 * 109.47085 * 64.99994 * 5 4 2 9 9 C 1.34777 * 119.99724 * 205.00369 * 8 5 4 10 10 O 1.21653 * 120.00226 * 359.97438 * 9 8 5 11 11 C 1.46988 * 119.99671 * 179.72572 * 9 8 5 12 12 C 1.33671 * 124.64007 * 180.27362 * 11 9 8 13 13 C 1.40307 * 115.50932 * 179.97438 * 12 11 9 14 14 C 1.41641 * 129.14892 * 179.97438 * 13 12 11 15 15 C 1.36525 * 118.85932 * 179.97438 * 14 13 12 16 16 C 1.38771 * 119.72315 * 0.02562 * 15 14 13 17 17 N 1.31288 * 121.07773 * 0.02562 * 16 15 14 18 18 C 1.33445 * 121.97910 * 359.97398 * 17 16 15 19 19 S 1.75468 * 124.63912 * 359.96767 * 11 9 8 20 20 N 1.46503 * 109.47223 * 120.00123 * 2 1 3 21 21 C 1.36930 * 119.99994 * 275.00324 * 20 2 1 22 22 H 1.08005 * 120.00170 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00265 * 179.97438 * 21 20 2 24 24 N 1.31615 * 119.99913 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00078 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46816 * 120.00498 * 25 23 21 28 28 H 1.48499 * 109.46996 * 239.99655 * 25 23 21 29 29 H 1.09004 * 109.47182 * 299.99664 * 1 2 3 30 30 H 1.09004 * 109.47355 * 59.99929 * 1 2 3 31 31 H 1.09007 * 109.47195 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46933 * 55.00087 * 4 2 1 33 33 H 1.09001 * 109.46769 * 295.00333 * 4 2 1 34 34 H 1.08998 * 109.47099 * 179.97438 * 7 5 4 35 35 H 1.08994 * 109.47099 * 299.99973 * 7 5 4 36 36 H 1.09003 * 109.47061 * 59.99966 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99937 * 8 5 4 38 38 H 1.08007 * 122.24442 * 359.97438 * 12 11 9 39 39 H 1.08006 * 120.56549 * 0.02562 * 14 13 12 40 40 H 1.07996 * 120.14005 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.46187 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99979 * 94.99970 * 20 2 1 43 43 H 0.97000 * 120.00524 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3343 -0.1824 9 6 5.3747 -0.9911 0.2733 10 8 5.9881 -0.0831 -0.2550 11 6 5.9630 -1.7105 1.4122 12 6 7.1612 -1.4449 1.9417 13 6 7.5343 -2.2515 3.0274 14 6 8.7240 -2.2227 3.7956 15 6 8.8696 -3.1152 4.8185 16 6 7.8584 -4.0274 5.0849 17 7 6.7588 -4.0488 4.3679 18 6 6.5583 -3.2024 3.3559 19 16 5.1850 -3.0303 2.2676 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0076 2.3757 22 1 1.8925 1.0404 2.4242 23 6 2.6112 -0.6621 3.5093 24 7 2.9234 -1.9393 3.4504 25 14 2.7902 0.2700 5.1182 26 1 2.3774 1.6827 4.9206 27 1 1.9291 -0.3579 6.1524 28 1 4.2071 0.2261 5.5607 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 5.1507 -1.1477 -2.6701 35 1 3.7723 -2.2741 -2.6700 36 1 3.6264 -0.6886 -3.4657 37 1 3.6647 -2.0585 0.2386 38 1 7.7994 -0.6618 1.5595 39 1 9.5021 -1.5065 3.5764 40 1 9.7684 -3.1118 5.4172 41 1 7.9782 -4.7318 5.8948 42 1 2.2490 -1.6318 1.1526 43 1 3.2467 -2.3966 4.2424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:52 Heat of formation + Delta-G solvation = 31.397258 kcal Electronic energy + Delta-G solvation = -27045.692046 eV Core-core repulsion = 23410.664149 eV Total energy + Delta-G solvation = -3635.027897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.84585 -39.27484 -36.99312 -35.10980 -34.27509 -32.48042 -31.90499 -30.92499 -29.10089 -28.63135 -26.43433 -24.53076 -23.90452 -23.64338 -21.81227 -20.40900 -20.32076 -19.51579 -18.01823 -17.42130 -16.72442 -16.16474 -15.39945 -15.21715 -14.84968 -14.57099 -14.44432 -13.97088 -13.90779 -13.84568 -13.45784 -13.03101 -12.85852 -12.76427 -12.35690 -12.24186 -12.07255 -11.91912 -11.76395 -11.70041 -11.25652 -11.01148 -10.96054 -10.86882 -10.47477 -10.36604 -10.28096 -10.04525 -9.97883 -9.80398 -9.44924 -9.17848 -8.99962 -8.52821 -8.10960 -7.49926 -6.86444 -5.99264 -3.16740 0.71763 1.50452 1.95164 2.44962 2.58115 3.34199 3.40070 3.43995 3.61717 3.85730 4.16323 4.43178 4.87448 4.98034 5.02468 5.21149 5.29654 5.34761 5.38615 5.41279 5.50317 5.59113 5.68109 5.78589 5.88453 5.91531 5.97222 6.04184 6.12949 6.17172 6.27238 6.28426 6.35270 6.43469 6.49392 6.57231 6.71493 6.74468 6.92720 6.96577 7.04782 7.46678 8.04882 8.14124 8.20864 8.77000 9.24846 9.76681 10.11438 11.14067 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.005487 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.400157 B = 5101.735959 C = 6635.689012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.052 0.948 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.086 0.914 7 C -0.163 4.163 8 N -0.696 5.696 9 C 0.600 3.400 10 O -0.552 6.552 11 C -0.241 4.241 12 C -0.082 4.082 13 C -0.136 4.136 14 C -0.034 4.034 15 C -0.192 4.192 16 C 0.117 3.883 17 N -0.451 5.451 18 C 0.001 3.999 19 S 0.336 5.664 20 N -0.714 5.714 21 C -0.194 4.194 22 H 0.074 0.926 23 C -0.025 4.025 24 N -0.895 5.895 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.378 0.622 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -3.270 -5.509 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.070 0.930 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.104 0.896 7 C -0.222 4.222 8 N -0.348 5.348 9 C 0.387 3.613 10 O -0.433 6.433 11 C -0.364 4.364 12 C -0.116 4.116 13 C -0.149 4.149 14 C -0.062 4.062 15 C -0.215 4.215 16 C -0.059 4.059 17 N -0.160 5.160 18 C -0.244 4.244 19 S 0.610 5.390 20 N -0.356 5.356 21 C -0.325 4.325 22 H 0.092 0.908 23 C -0.221 4.221 24 N -0.543 5.543 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.238 0.762 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.213 0.787 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.079 -3.772 -5.928 7.672 hybrid contribution 1.931 1.345 1.492 2.786 sum 5.010 -2.428 -4.437 7.119 Atomic orbital electron populations 1.22390 0.98802 1.00921 1.00162 1.20369 0.91948 0.95887 0.86183 0.93031 1.22232 0.93937 1.01749 0.99438 1.20853 0.92474 0.97378 0.84785 0.89614 1.22213 1.01963 1.00909 0.97075 1.45877 1.17403 1.37635 1.33864 1.16882 0.81028 0.82136 0.81277 1.90716 1.62201 1.30613 1.59751 1.23845 1.00140 1.08419 1.04033 1.19623 0.96238 1.00338 0.95444 1.18821 0.96701 0.99762 0.99609 1.21096 0.95007 0.96849 0.93264 1.21468 1.01255 0.98700 1.00125 1.22636 0.89002 0.97119 0.97130 1.67201 1.22351 1.22307 1.04152 1.24543 0.99010 0.98450 1.02405 1.85218 1.07039 1.25822 1.20909 1.42640 1.76893 1.10371 1.05667 1.19506 1.32144 0.93994 0.86905 0.90812 1.24569 1.03195 0.96224 0.98065 1.69205 1.47741 1.08511 1.28889 0.86124 0.77578 0.78847 0.83932 1.20625 1.21693 1.21773 0.92766 0.94315 0.93451 0.90420 0.91597 0.92229 0.92689 0.91950 0.76187 0.84239 0.85268 0.85154 0.82812 0.78666 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.49 37.15 0.35 -2.23 16 2 C 0.17 2.87 2.89 -67.93 -0.20 2.67 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.90 4.43 -26.73 -0.12 -2.02 16 5 C 0.15 2.34 2.57 -67.93 -0.17 2.16 16 6 H 0.09 1.51 7.58 -51.92 -0.39 1.11 16 7 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 8 N -0.70 -12.55 3.79 -55.02 -0.21 -12.76 16 9 C 0.60 12.35 7.76 -12.72 -0.10 12.25 16 10 O -0.55 -12.44 16.38 5.23 0.09 -12.35 16 11 C -0.24 -4.91 6.31 -37.64 -0.24 -5.15 16 12 C -0.08 -1.59 9.79 -40.40 -0.40 -1.99 16 13 C -0.14 -2.54 5.88 -107.10 -0.63 -3.17 16 14 C -0.03 -0.52 10.16 -38.90 -0.40 -0.91 16 15 C -0.19 -2.60 10.01 -40.00 -0.40 -3.00 16 16 C 0.12 1.77 11.18 -17.59 -0.20 1.57 16 17 N -0.45 -8.56 10.39 -11.65 -0.12 -8.68 16 18 C 0.00 0.01 7.66 -16.13 -0.12 -0.11 16 19 S 0.34 6.70 19.23 -107.50 -2.07 4.64 16 20 N -0.71 -15.10 3.84 -53.43 -0.21 -15.30 16 21 C -0.19 -4.76 9.93 -15.06 -0.15 -4.91 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.03 -0.64 5.50 -17.43 -0.10 -0.73 16 24 N -0.90 -22.48 10.06 55.49 0.56 -21.92 16 25 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 7.26 5.55 -40.82 -0.23 7.03 16 38 H 0.14 2.55 7.96 -52.48 -0.42 2.13 16 39 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.38 8.18 5.70 -40.82 -0.23 7.94 16 43 H 0.26 6.78 8.21 -40.82 -0.34 6.45 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -28.76 367.85 -9.83 -38.59 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.88 Total: 12.99 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.51 Total: -7.34 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.02 Total: -58.67 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -2.07 Total: 4.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.76 -9.83 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.986 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds