Wall clock time and date at job start Tue Mar 31 2020 18:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47399 * 2 1 4 4 C 1.53004 * 109.47357 * 240.00006 * 2 1 3 5 5 C 1.52998 * 109.47475 * 175.00124 * 4 2 1 6 6 H 1.09008 * 109.46859 * 305.00179 * 5 4 2 7 7 C 1.52996 * 109.47309 * 185.00095 * 5 4 2 8 8 N 1.46505 * 109.47085 * 64.99994 * 5 4 2 9 9 C 1.34777 * 119.99724 * 205.00369 * 8 5 4 10 10 O 1.21653 * 120.00226 * 359.97438 * 9 8 5 11 11 C 1.46988 * 119.99671 * 179.72572 * 9 8 5 12 12 C 1.33671 * 124.64007 * 180.27362 * 11 9 8 13 13 C 1.40307 * 115.50932 * 179.97438 * 12 11 9 14 14 C 1.41641 * 129.14892 * 179.97438 * 13 12 11 15 15 C 1.36525 * 118.85932 * 179.97438 * 14 13 12 16 16 C 1.38771 * 119.72315 * 0.02562 * 15 14 13 17 17 N 1.31288 * 121.07773 * 0.02562 * 16 15 14 18 18 C 1.33445 * 121.97910 * 359.97398 * 17 16 15 19 19 S 1.75468 * 124.63912 * 359.96767 * 11 9 8 20 20 N 1.46503 * 109.47223 * 120.00123 * 2 1 3 21 21 C 1.36930 * 119.99994 * 275.00324 * 20 2 1 22 22 H 1.08005 * 120.00170 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00265 * 179.97438 * 21 20 2 24 24 N 1.31615 * 119.99913 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00078 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46816 * 120.00498 * 25 23 21 28 28 H 1.48499 * 109.46996 * 239.99655 * 25 23 21 29 29 H 1.09004 * 109.47182 * 299.99664 * 1 2 3 30 30 H 1.09004 * 109.47355 * 59.99929 * 1 2 3 31 31 H 1.09007 * 109.47195 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46933 * 55.00087 * 4 2 1 33 33 H 1.09001 * 109.46769 * 295.00333 * 4 2 1 34 34 H 1.08998 * 109.47099 * 179.97438 * 7 5 4 35 35 H 1.08994 * 109.47099 * 299.99973 * 7 5 4 36 36 H 1.09003 * 109.47061 * 59.99966 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99937 * 8 5 4 38 38 H 1.08007 * 122.24442 * 359.97438 * 12 11 9 39 39 H 1.08006 * 120.56549 * 0.02562 * 14 13 12 40 40 H 1.07996 * 120.14005 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.46187 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99979 * 94.99970 * 20 2 1 43 43 H 0.97000 * 120.00524 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2678 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3343 -0.1824 9 6 5.3747 -0.9911 0.2733 10 8 5.9881 -0.0831 -0.2550 11 6 5.9630 -1.7105 1.4122 12 6 7.1612 -1.4449 1.9417 13 6 7.5343 -2.2515 3.0274 14 6 8.7240 -2.2227 3.7956 15 6 8.8696 -3.1152 4.8185 16 6 7.8584 -4.0274 5.0849 17 7 6.7588 -4.0488 4.3679 18 6 6.5583 -3.2024 3.3559 19 16 5.1850 -3.0303 2.2676 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0076 2.3757 22 1 1.8925 1.0404 2.4242 23 6 2.6112 -0.6621 3.5093 24 7 2.9234 -1.9393 3.4504 25 14 2.7902 0.2700 5.1182 26 1 2.3774 1.6827 4.9206 27 1 1.9291 -0.3579 6.1524 28 1 4.2071 0.2261 5.5607 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 5.1507 -1.1477 -2.6701 35 1 3.7723 -2.2741 -2.6700 36 1 3.6264 -0.6886 -3.4657 37 1 3.6647 -2.0585 0.2386 38 1 7.7994 -0.6618 1.5595 39 1 9.5021 -1.5065 3.5764 40 1 9.7684 -3.1118 5.4172 41 1 7.9782 -4.7318 5.8948 42 1 2.2490 -1.6318 1.1526 43 1 3.2467 -2.3966 4.2424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135852842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:51 Heat of formation + Delta-G solvation = 14.467342 kcal Electronic energy + Delta-G solvation = -27046.426182 eV Core-core repulsion = 23410.664149 eV Total energy + Delta-G solvation = -3635.762034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25020 -40.74069 -38.44069 -36.57263 -35.80980 -34.10147 -33.18832 -32.36430 -30.58778 -30.07685 -27.61890 -25.94591 -25.62589 -24.99330 -23.16169 -21.80714 -21.68659 -20.99266 -19.44866 -19.16406 -18.08230 -17.59135 -16.79467 -16.71729 -16.33936 -16.07687 -15.83617 -15.58562 -15.48725 -15.27089 -14.99751 -14.37152 -14.24348 -13.97665 -13.78634 -13.61839 -13.34743 -13.30961 -13.04543 -12.95030 -12.82532 -12.63950 -12.57136 -12.30490 -12.17394 -11.83758 -11.75093 -11.58563 -11.44142 -11.22289 -11.06072 -10.88902 -10.34046 -10.01781 -9.55203 -9.07296 -8.49900 -7.81949 -5.04047 -0.66265 0.21831 0.46941 1.00279 1.08099 1.38576 1.44465 1.47514 2.12116 2.37703 2.55262 2.82771 3.46441 3.58222 3.73420 3.81404 3.89680 4.00189 4.08275 4.14205 4.17233 4.35650 4.49388 4.55297 4.62986 4.66669 4.82460 4.85770 4.87165 4.89115 4.96005 5.07055 5.12793 5.14611 5.18837 5.32796 5.35823 5.40366 5.56714 5.61118 5.68331 5.75062 6.30293 6.54186 6.88739 7.21309 7.40198 8.10882 8.37366 9.27127 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.005487 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.400157 B = 5101.735959 C = 6635.689012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.033 0.967 4 C -0.122 4.122 5 C 0.143 3.857 6 H 0.063 0.937 7 C -0.153 4.153 8 N -0.687 5.687 9 C 0.594 3.406 10 O -0.580 6.580 11 C -0.258 4.258 12 C -0.077 4.077 13 C -0.157 4.157 14 C -0.036 4.036 15 C -0.176 4.176 16 C 0.127 3.873 17 N -0.490 5.490 18 C -0.012 4.012 19 S 0.311 5.689 20 N -0.720 5.720 21 C -0.211 4.211 22 H 0.059 0.941 23 C -0.052 4.052 24 N -0.906 5.906 25 Si 0.933 3.067 26 H -0.279 1.279 27 H -0.295 1.295 28 H -0.311 1.311 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.401 0.599 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.196 0.804 42 H 0.374 0.626 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -4.165 -5.782 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.051 0.949 4 C -0.160 4.160 5 C 0.040 3.960 6 H 0.081 0.919 7 C -0.211 4.211 8 N -0.337 5.337 9 C 0.381 3.619 10 O -0.463 6.463 11 C -0.380 4.380 12 C -0.113 4.113 13 C -0.169 4.169 14 C -0.064 4.064 15 C -0.198 4.198 16 C -0.048 4.048 17 N -0.201 5.201 18 C -0.255 4.255 19 S 0.584 5.416 20 N -0.362 5.362 21 C -0.343 4.343 22 H 0.077 0.923 23 C -0.247 4.247 24 N -0.556 5.556 25 Si 0.766 3.234 26 H -0.205 1.205 27 H -0.222 1.222 28 H -0.239 1.239 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.238 0.762 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.200 0.800 41 H 0.213 0.787 42 H 0.208 0.792 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.904 -4.678 -6.224 9.202 hybrid contribution 1.764 1.483 1.692 2.859 sum 6.668 -3.196 -4.533 8.673 Atomic orbital electron populations 1.22251 0.97337 1.01092 1.00562 1.20551 0.92944 0.95061 0.86332 0.94888 1.22169 0.92512 1.02255 0.99036 1.21080 0.93605 0.96137 0.85216 0.91896 1.22126 1.00784 1.01966 0.96257 1.45959 1.16491 1.37221 1.34063 1.17057 0.81704 0.81914 0.81258 1.90682 1.63110 1.31854 1.60694 1.23994 1.00840 1.08560 1.04602 1.19919 0.95878 1.00148 0.95308 1.19137 0.98209 0.99494 1.00096 1.21618 0.94267 0.97751 0.92732 1.22052 1.02243 0.96421 0.99109 1.23567 0.87649 0.97142 0.96462 1.67251 1.24627 1.23228 1.04998 1.24608 0.99199 0.99136 1.02583 1.85118 1.08222 1.26246 1.22018 1.42611 1.77661 1.10049 1.05864 1.19372 1.33209 0.93496 0.88272 0.92271 1.24873 1.04039 0.96774 0.98967 1.69348 1.49844 1.08310 1.28077 0.85666 0.75936 0.78562 0.83194 1.20453 1.22221 1.23943 0.95131 0.91103 0.93311 0.86729 0.90533 0.94122 0.91305 0.89034 0.76185 0.83376 0.81841 0.79975 0.78686 0.79150 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.49 71.98 0.68 -4.04 16 2 C 0.16 5.53 2.89 44.99 0.13 5.66 16 3 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 4 C -0.12 -3.22 4.43 30.59 0.14 -3.08 16 5 C 0.14 4.42 2.57 44.99 0.12 4.53 16 6 H 0.06 2.24 7.58 -2.38 -0.02 2.23 16 7 C -0.15 -3.74 9.48 71.98 0.68 -3.06 16 8 N -0.69 -25.35 3.79 -446.21 -1.69 -27.05 16 9 C 0.59 25.25 7.76 86.54 0.67 25.92 16 10 O -0.58 -26.92 16.38 -4.20 -0.07 -26.99 16 11 C -0.26 -10.83 6.31 23.53 0.15 -10.68 16 12 C -0.08 -3.02 9.79 21.74 0.21 -2.81 16 13 C -0.16 -5.71 5.88 -21.47 -0.13 -5.83 16 14 C -0.04 -0.96 10.16 22.71 0.23 -0.73 16 15 C -0.18 -3.86 10.01 22.00 0.22 -3.64 16 16 C 0.13 3.32 11.18 84.90 0.95 4.27 16 17 N -0.49 -17.95 10.39 -190.76 -1.98 -19.93 16 18 C -0.01 -0.48 7.66 84.92 0.65 0.17 16 19 S 0.31 12.81 19.23 -56.49 -1.09 11.73 16 20 N -0.72 -31.36 3.84 -322.95 -1.24 -32.61 16 21 C -0.21 -10.78 9.93 84.03 0.83 -9.95 16 22 H 0.06 3.11 7.83 -2.91 -0.02 3.09 16 23 C -0.05 -2.74 5.50 84.86 0.47 -2.27 16 24 N -0.91 -47.42 10.06 21.65 0.22 -47.21 16 25 Si 0.93 45.97 29.55 68.60 2.03 48.00 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16 29 H 0.03 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.40 14.94 5.55 -92.71 -0.51 14.43 16 38 H 0.15 5.39 7.96 -2.91 -0.02 5.37 16 39 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.20 3.38 8.06 -2.91 -0.02 3.35 16 42 H 0.37 16.67 5.70 -92.71 -0.53 16.14 16 43 H 0.25 13.46 8.21 -92.71 -0.76 12.70 16 Total: -1.00 -67.23 367.85 2.19 -65.05 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.01 Total: 34.55 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 6.01 Total: -5.54 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -4.70 Total: -126.79 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.07 Total: -26.99 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 12.81 SS G_CDS: -1.09 Total: 11.73 kcal Total: -67.23 2.19 -65.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.515 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds